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Items: 37

1.

Transcriptome Response of Female Culicoides sonorensis Biting Midges (Diptera: Ceratopogonidae) to Early Infection with Epizootic Hemorrhagic Disease Virus (EHDV-2).

Nayduch D, Shankar V, Mills MK, Robl T, Drolet BS, Ruder MG, Scully ED, Saski CA.

Viruses. 2019 May 24;11(5). pii: E473. doi: 10.3390/v11050473.

2.

The identification of differentially expressed genes between extremes of placental efficiency in maternal line gilts on day 95 of gestation.

Krombeen SK, Shankar V, Noorai RE, Saski CA, Sharp JL, Wilson ME, Wilmoth TA.

BMC Genomics. 2019 Mar 29;20(1):254. doi: 10.1186/s12864-019-5626-0.

3.

Genetic characterization of worldwide Prunus domestica (plum) germplasm using sequence-based genotyping.

Zhebentyayeva T, Shankar V, Scorza R, Callahan A, Ravelonandro M, Castro S, DeJong T, Saski CA, Dardick C.

Hortic Res. 2019 Jan 1;6:12. doi: 10.1038/s41438-018-0090-6. eCollection 2019.

4.

An EST-SSR based genetic linkage map and identification of QTLs for anthracnose disease resistance in water yam (Dioscorea alata L.).

Bhattacharjee R, Nwadili CO, Saski CA, Paterne A, Scheffler BE, Augusto J, Lopez-Montes A, Onyeka JT, Kumar PL, Bandyopadhyay R.

PLoS One. 2018 Oct 10;13(10):e0197717. doi: 10.1371/journal.pone.0197717. eCollection 2018.

5.

RNA-Seq transcriptome analysis of Amaranthus palmeri with differential tolerance to glufosinate herbicide.

Salas-Perez RA, Saski CA, Noorai RE, Srivastava SK, Lawton-Rauh AL, Nichols RL, Roma-Burgos N.

PLoS One. 2018 Apr 19;13(4):e0195488. doi: 10.1371/journal.pone.0195488. eCollection 2018.

6.

Draft Genome Sequence of the 1,4-Dioxane-Degrading Bacterium Pseudonocardia dioxanivorans BERK-1.

Ramos-Garcia AA, Shankar V, Saski CA, Hsiang T, Freedman DL.

Genome Announc. 2018 Apr 5;6(14). pii: e00207-18. doi: 10.1128/genomeA.00207-18.

7.

Extrachromosomal circular DNA-based amplification and transmission of herbicide resistance in crop weed Amaranthus palmeri.

Koo DH, Molin WT, Saski CA, Jiang J, Putta K, Jugulam M, Friebe B, Gill BS.

Proc Natl Acad Sci U S A. 2018 Mar 27;115(13):3332-3337. doi: 10.1073/pnas.1719354115. Epub 2018 Mar 12.

8.

Genomic Sequencing of Japanese Plum (Prunus salicina Lindl.) Mutants Provides a New Model for Rosaceae Fruit Ripening Studies.

Fernandez I Marti A, Saski CA, Manganaris GA, Gasic K, Crisosto CH.

Front Plant Sci. 2018 Feb 19;9:21. doi: 10.3389/fpls.2018.00021. eCollection 2018.

9.

Sub genome anchored physical frameworks of the allotetraploid Upland cotton (Gossypium hirsutum L.) genome, and an approach toward reference-grade assemblies of polyploids.

Saski CA, Scheffler BE, Hulse-Kemp AM, Liu B, Song Q, Ando A, Stelly DM, Scheffler JA, Grimwood J, Jones DC, Peterson DG, Schmutz J, Chen ZJ.

Sci Rep. 2017 Nov 10;7(1):15274. doi: 10.1038/s41598-017-14885-w.

10.

RNA sequencing indicates that atrazine induces multiple detoxification genes in Daphnia magna and this is a potential source of its mixture interactions with other chemicals.

Schmidt AM, Sengupta N, Saski CA, Noorai RE, Baldwin WS.

Chemosphere. 2017 Dec;189:699-708. doi: 10.1016/j.chemosphere.2017.09.107. Epub 2017 Sep 25.

11.

Low glucose concentrations within typical industrial operating conditions have minimal effect on the transcriptome of recombinant CHO cells.

Gowtham YK, Saski CA, Harcum SW.

Biotechnol Prog. 2017 May;33(3):771-785. doi: 10.1002/btpr.2462. Epub 2017 Apr 17.

PMID:
28371311
12.

Novel pathogenic variants in FOXP3 in fetuses with echogenic bowel and skin desquamation identified by ultrasound.

Louie RJ, Tan QK, Gilner JB, Rogers RC, Younge N, Wechsler SB, McDonald MT, Gordon B, Saski CA, Jones JR, Chapman SJ, Stevenson RE, Sleasman JW, Friez MJ.

Am J Med Genet A. 2017 May;173(5):1219-1225. doi: 10.1002/ajmg.a.38144. Epub 2017 Mar 20.

13.

The unique genomic landscape surrounding the EPSPS gene in glyphosate resistant Amaranthus palmeri: a repetitive path to resistance.

Molin WT, Wright AA, Lawton-Rauh A, Saski CA.

BMC Genomics. 2017 Jan 17;18(1):91. doi: 10.1186/s12864-016-3336-4.

14.

Complete gene sequence of spider attachment silk protein (PySp1) reveals novel linker regions and extreme repeat homogenization.

Chaw RC, Saski CA, Hayashi CY.

Insect Biochem Mol Biol. 2017 Feb;81:80-90. doi: 10.1016/j.ibmb.2017.01.002. Epub 2017 Jan 2.

15.

Impact of the blood meal on humoral immunity and microbiota in the gut of female Culicoides sonorensis.

Nayduch D, Erram D, Lee MB, Zurek L, Saski CA.

Vet Ital. 2015 Oct-Dec;51(4):385-92. doi: 10.12834/VetIt.495.2397.2.

16.

Developing expressed sequence tag libraries and the discovery of simple sequence repeat markers for two species of raspberry (Rubus L.).

Bushakra JM, Lewers KS, Staton ME, Zhebentyayeva T, Saski CA.

BMC Plant Biol. 2015 Oct 26;15:258. doi: 10.1186/s12870-015-0629-8.

17.

Entamoeba histolytica Dmc1 Catalyzes Homologous DNA Pairing and Strand Exchange That Is Stimulated by Calcium and Hop2-Mnd1.

Kelso AA, Say AF, Sharma D, Ledford LL, Turchick A, Saski CA, King AV, Attaway CC, Temesvari LA, Sehorn MG.

PLoS One. 2015 Sep 30;10(9):e0139399. doi: 10.1371/journal.pone.0139399. eCollection 2015.

18.

Genomic Resources for Water Yam (Dioscorea alata L.): Analyses of EST-Sequences, De Novo Sequencing and GBS Libraries.

Saski CA, Bhattacharjee R, Scheffler BE, Asiedu R.

PLoS One. 2015 Jul 29;10(7):e0134031. doi: 10.1371/journal.pone.0134031. eCollection 2015.

19.

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement.

Zhang T, Hu Y, Jiang W, Fang L, Guan X, Chen J, Zhang J, Saski CA, Scheffler BE, Stelly DM, Hulse-Kemp AM, Wan Q, Liu B, Liu C, Wang S, Pan M, Wang Y, Wang D, Ye W, Chang L, Zhang W, Song Q, Kirkbride RC, Chen X, Dennis E, Llewellyn DJ, Peterson DG, Thaxton P, Jones DC, Wang Q, Xu X, Zhang H, Wu H, Zhou L, Mei G, Chen S, Tian Y, Xiang D, Li X, Ding J, Zuo Q, Tao L, Liu Y, Li J, Lin Y, Hui Y, Cao Z, Cai C, Zhu X, Jiang Z, Zhou B, Guo W, Li R, Chen ZJ.

Nat Biotechnol. 2015 May;33(5):531-7. doi: 10.1038/nbt.3207. Epub 2015 Apr 20.

PMID:
25893781
20.

BAC-End Sequence-Based SNP Mining in Allotetraploid Cotton (Gossypium) Utilizing Resequencing Data, Phylogenetic Inferences, and Perspectives for Genetic Mapping.

Hulse-Kemp AM, Ashrafi H, Stoffel K, Zheng X, Saski CA, Scheffler BE, Fang DD, Chen ZJ, Van Deynze A, Stelly DM.

G3 (Bethesda). 2015 Apr 9;5(6):1095-105. doi: 10.1534/g3.115.017749.

21.

BAC sequencing using pooled methods.

Saski CA, Feltus FA, Parida L, Haiminen N.

Methods Mol Biol. 2015;1227:55-67. doi: 10.1007/978-1-4939-1652-8_3.

PMID:
25239741
22.
23.
24.

Studying the organization of genes encoding plant cell wall degrading enzymes in Chrysomela tremula provides insights into a leaf beetle genome.

Pauchet Y, Saski CA, Feltus FA, Luyten I, Quesneville H, Heckel DG.

Insect Mol Biol. 2014 Jun;23(3):286-300. doi: 10.1111/imb.12081. Epub 2014 Jan 23.

PMID:
24456018
25.

Choline supplementation and DNA methylation in the hippocampus and prefrontal cortex of rats exposed to alcohol during development.

Otero NK, Thomas JD, Saski CA, Xia X, Kelly SJ.

Alcohol Clin Exp Res. 2012 Oct;36(10):1701-9. doi: 10.1111/j.1530-0277.2012.01784.x. Epub 2012 Apr 17.

26.

Enhancing genome investigations in the mosquito Culex quinquefasciatus via BAC library construction and characterization.

Hickner PV, Debruyn B, Lovin DD, Mori A, Saski CA, Severson DW.

BMC Res Notes. 2011 Sep 13;4:358. doi: 10.1186/1756-0500-4-358.

27.

A genetically anchored physical framework for Theobroma cacao cv. Matina 1-6.

Saski CA, Feltus FA, Staton ME, Blackmon BP, Ficklin SP, Kuhn DN, Schnell RJ, Shapiro H, Motamayor JC.

BMC Genomics. 2011 Aug 16;12:413. doi: 10.1186/1471-2164-12-413.

28.

Sequencing of a QTL-rich region of the Theobroma cacao genome using pooled BACs and the identification of trait specific candidate genes.

Feltus FA, Saski CA, Mockaitis K, Haiminen N, Parida L, Smith Z, Ford J, Staton ME, Ficklin SP, Blackmon BP, Cheng CH, Schnell RJ, Kuhn DN, Motamayor JC.

BMC Genomics. 2011 Jul 27;12:379. doi: 10.1186/1471-2164-12-379.

29.

New genomic resources for switchgrass: a BAC library and comparative analysis of homoeologous genomic regions harboring bioenergy traits.

Saski CA, Li Z, Feltus FA, Luo H.

BMC Genomics. 2011 Jul 18;12:369. doi: 10.1186/1471-2164-12-369.

30.

Mapping Fusarium wilt race 1 resistance genes in cotton by inheritance, QTL and sequencing composition.

Ulloa M, Wang C, Hutmacher RB, Wright SD, Davis RM, Saski CA, Roberts PA.

Mol Genet Genomics. 2011 Jul;286(1):21-36. doi: 10.1007/s00438-011-0616-1. Epub 2011 May 1.

PMID:
21533837
31.

Adventures in the enormous: a 1.8 million clone BAC library for the 21.7 Gb genome of loblolly pine.

Magbanua ZV, Ozkan S, Bartlett BD, Chouvarine P, Saski CA, Liston A, Cronn RC, Nelson CD, Peterson DG.

PLoS One. 2011 Jan 21;6(1):e16214. doi: 10.1371/journal.pone.0016214.

32.

Genomic tools development for Aquilegia: construction of a BAC-based physical map.

Fang GC, Blackmon BP, Henry DC, Staton ME, Saski CA, Hodges SA, Tomkins JP, Luo H.

BMC Genomics. 2010 Nov 8;11:621. doi: 10.1186/1471-2164-11-621.

33.

Divergence genetics analysis reveals historical population genetic processes leading to contrasting phylogeographic patterns in co-distributed species.

McGovern TM, Keever CC, Saski CA, Hart MW, Marko PB.

Mol Ecol. 2010 Nov;19(22):5043-60. doi: 10.1111/j.1365-294X.2010.04854.x. Epub 2010 Oct 12.

PMID:
21040048
34.

Widespread divergence between incipient Anopheles gambiae species revealed by whole genome sequences.

Lawniczak MK, Emrich SJ, Holloway AK, Regier AP, Olson M, White B, Redmond S, Fulton L, Appelbaum E, Godfrey J, Farmer C, Chinwalla A, Yang SP, Minx P, Nelson J, Kyung K, Walenz BP, Garcia-Hernandez E, Aguiar M, Viswanathan LD, Rogers YH, Strausberg RL, Saski CA, Lawson D, Collins FH, Kafatos FC, Christophides GK, Clifton SW, Kirkness EF, Besansky NJ.

Science. 2010 Oct 22;330(6003):512-4. doi: 10.1126/science.1195755.

35.

Permanent Genetic Resources added to Molecular Ecology Resources Database 1 October 2009-30 November 2009.

Molecular Ecology Resources Primer Development Consortium, An J, Bechet A, Berggren A, Brown SK, Bruford MW, Cai Q, Cassel-Lundhagen A, Cezilly F, Chen SL, Cheng W, Choi SK, Ding XY, Fan Y, Feldheim KA, Feng ZY, Friesen VL, Gaillard M, Galaraza JA, Gallo L, Ganeshaiah KN, Geraci J, Gibbons JG, Grant WS, Grauvogel Z, Gustafsson S, Guyon JR, Han L, Heath DD, Hemmilä S, Hogan JD, Hou BW, Jakse J, Javornik B, Kaňuch P, Kim KK, Kim KS, Kim SG, Kim SI, Kim WJ, Kim YK, Klich MA, Kreiser BR, Kwan YS, Lam AW, Lasater K, Lascoux M, Lee H, Lee YS, Li DL, Li SJ, Li WY, Liao X, Liber Z, Lin L, Liu S, Luo XH, Ma YH, Ma Y, Marchelli P, Min MS, Moccia MD, Mohana KP, Moore M, Morris-Pocock JA, Park HC, Pfunder M, Ivan R, Ravikanth G, Roderick GK, Rokas A, Sacks BN, Saski CA, Satovic Z, Schoville SD, Sebastiani F, Sha ZX, Shin EH, Soliani C, Sreejayan N, Sun Z, Tao Y, Taylor SA, Templin WD, Shaanker RU, Vasudeva R, Vendramin GG, Walter RP, Wang GZ, Wang KJ, Wang YQ, Wattier RA, Wei F, Widmer A, Woltmann S, Won YJ, Wu J, Xie ML, Xu G, Xu XJ, Ye HH, Zhan X, Zhang F, Zhong J.

Mol Ecol Resour. 2010 Mar;10(2):404-8. doi: 10.1111/j.1755-0998.2009.02827.x. Epub 2010 Jan 20.

PMID:
21565039
36.

A blackberry (Rubus L.) expressed sequence tag library for the development of simple sequence repeat markers.

Lewers KS, Saski CA, Cuthbertson BJ, Henry DC, Staton ME, Main DS, Dhanaraj AL, Rowland LJ, Tomkins JP.

BMC Plant Biol. 2008 Jun 20;8:69. doi: 10.1186/1471-2229-8-69.

37.

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