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Items: 10

1.

SABER amplifies FISH: enhanced multiplexed imaging of RNA and DNA in cells and tissues.

Kishi JY, Lapan SW, Beliveau BJ, West ER, Zhu A, Sasaki HM, Saka SK, Wang Y, Cepko CL, Yin P.

Nat Methods. 2019 Jun;16(6):533-544. doi: 10.1038/s41592-019-0404-0. Epub 2019 May 20.

PMID:
31110282
2.

Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling.

Nir G, Farabella I, Pérez Estrada C, Ebeling CG, Beliveau BJ, Sasaki HM, Lee SD, Nguyen SC, McCole RB, Chattoraj S, Erceg J, AlHaj Abed J, Martins NMC, Nguyen HQ, Hannan MA, Russell S, Durand NC, Rao SSP, Kishi JY, Soler-Vila P, Di Pierro M, Onuchic JN, Callahan SP, Schreiner JM, Stuckey JA, Yin P, Aiden EL, Marti-Renom MA, Wu CT.

PLoS Genet. 2018 Dec 26;14(12):e1007872. doi: 10.1371/journal.pgen.1007872. eCollection 2018 Dec.

3.

OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes.

Beliveau BJ, Kishi JY, Nir G, Sasaki HM, Saka SK, Nguyen SC, Wu CT, Yin P.

Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):E2183-E2192. doi: 10.1073/pnas.1714530115. Epub 2018 Feb 20.

4.

Multiplexed 3D super-resolution imaging of whole cells using spinning disk confocal microscopy and DNA-PAINT.

Schueder F, Lara-Gutiérrez J, Beliveau BJ, Saka SK, Sasaki HM, Woehrstein JB, Strauss MT, Grabmayr H, Yin P, Jungmann R.

Nat Commun. 2017 Dec 12;8(1):2090. doi: 10.1038/s41467-017-02028-8.

5.

Single-Molecule Analysis for RISC Assembly and Target Cleavage.

Sasaki HM, Tadakuma H, Tomari Y.

Methods Mol Biol. 2018;1680:145-164. doi: 10.1007/978-1-4939-7339-2_10.

PMID:
29030847
6.

Single-Molecule Analysis of the Target Cleavage Reaction by the Drosophila RNAi Enzyme Complex.

Yao C, Sasaki HM, Ueda T, Tomari Y, Tadakuma H.

Mol Cell. 2015 Jul 2;59(1):125-32. doi: 10.1016/j.molcel.2015.05.015.

7.

Defining fundamental steps in the assembly of the Drosophila RNAi enzyme complex.

Iwasaki S, Sasaki HM, Sakaguchi Y, Suzuki T, Tadakuma H, Tomari Y.

Nature. 2015 May 28;521(7553):533-6. doi: 10.1038/nature14254. Epub 2015 Mar 30.

PMID:
25822791
8.

The true core of RNA silencing revealed.

Sasaki HM, Tomari Y.

Nat Struct Mol Biol. 2012 Jul 5;19(7):657-60. doi: 10.1038/nsmb.2302. No abstract available.

PMID:
22767235
9.

Transplantation of a tyrosine editing domain into a tyrosyl-tRNA synthetase variant enhances its specificity for a tyrosine analog.

Oki K, Sakamoto K, Kobayashi T, Sasaki HM, Yokoyama S.

Proc Natl Acad Sci U S A. 2008 Sep 9;105(36):13298-303. doi: 10.1073/pnas.0803531105. Epub 2008 Sep 2.

10.

Structural and mutational studies of the amino acid-editing domain from archaeal/eukaryal phenylalanyl-tRNA synthetase.

Sasaki HM, Sekine S, Sengoku T, Fukunaga R, Hattori M, Utsunomiya Y, Kuroishi C, Kuramitsu S, Shirouzu M, Yokoyama S.

Proc Natl Acad Sci U S A. 2006 Oct 3;103(40):14744-9. Epub 2006 Sep 26.

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