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Items: 17


Rare Germline Pathogenic Mutations of DNA Repair Genes Are Most Strongly Associated with Grade Group 5 Prostate Cancer.

Wu Y, Yu H, Li S, Wiley K, Zheng SL, LaDuca H, Gielzak M, Na R, Sarver BAJ, Helfand BT, Walsh PC, Lotan TL, Cooney KA, Black MH, Xu J, Isaacs WB.

Eur Urol Oncol. 2020 Jan 13. pii: S2588-9311(19)30169-5. doi: 10.1016/j.euo.2019.12.003. [Epub ahead of print]


The choice of tree prior and molecular clock does not substantially affect phylogenetic inferences of diversification rates.

Sarver BAJ, Pennell MW, Brown JW, Keeble S, Hardwick KM, Sullivan J, Harmon LJ.

PeerJ. 2019 Mar 13;7:e6334. doi: 10.7717/peerj.6334. eCollection 2019.


A Bayesian framework for efficient and accurate variant prediction.

Qian D, Li S, Tian Y, Clifford JW, Sarver BAJ, Pesaran T, Gau CL, Elliott AM, Lu HM, Black MH.

PLoS One. 2018 Sep 13;13(9):e0203553. doi: 10.1371/journal.pone.0203553. eCollection 2018.


The Evolution of Polymorphic Hybrid Incompatibilities in House Mice.

Larson EL, Vanderpool D, Sarver BAJ, Callahan C, Keeble S, Provencio LL, Kessler MD, Stewart V, Nordquist E, Dean MD, Good JM.

Genetics. 2018 Jul;209(3):845-859. doi: 10.1534/genetics.118.300840. Epub 2018 Apr 24.


Whole exome sequencing of wild-derived inbred strains of mice improves power to link phenotype and genotype.

Chang PL, Kopania E, Keeble S, Sarver BAJ, Larson E, Orth A, Belkhir K, Boursot P, Bonhomme F, Good JM, Dean MD.

Mamm Genome. 2017 Oct;28(9-10):416-425. doi: 10.1007/s00335-017-9704-9. Epub 2017 Aug 17.


Phylogenomic Insights into Mouse Evolution Using a Pseudoreference Approach.

Sarver BA, Keeble S, Cosart T, Tucker PK, Dean MD, Good JM.

Genome Biol Evol. 2017 Mar 1;9(3):726-739. doi: 10.1093/gbe/evx034.


Comparative Phylogenomic Assessment of Mitochondrial Introgression among Several Species of Chipmunks (Tamias).

Sarver BA, Demboski JR, Good JM, Forshee N, Hunter SS, Sullivan J.

Genome Biol Evol. 2017 Jan 1;9(1):7-19. doi: 10.1093/gbe/evw254.


Contrasting Levels of Molecular Evolution on the Mouse X Chromosome.

Larson EL, Vanderpool D, Keeble S, Zhou M, Sarver BA, Smith AD, Dean MD, Good JM.

Genetics. 2016 Aug;203(4):1841-57. doi: 10.1534/genetics.116.186825. Epub 2016 Jun 17.


Endocrine rhythms in the brown bear (Ursus arctos): Evidence supporting selection for decreased pineal gland size.

Ware JV, Nelson OL, Robbins CT, Carter PA, Sarver BA, Jansen HT.

Physiol Rep. 2013 Aug;1(3):e00048. doi: 10.1002/phy2.48. Epub 2013 Aug 22.


Trees of unusual size: biased inference of early bursts from large molecular phylogenies.

Pennell MW, Sarver BA, Harmon LJ.

PLoS One. 2012;7(9):e43348. doi: 10.1371/journal.pone.0043348. Epub 2012 Sep 5.


Goldilocks Meets Santa Rosalia: An Ephemeral Speciation Model Explains Patterns of Diversification Across Time Scales.

Rosenblum EB, Sarver BA, Brown JW, Des Roches S, Hardwick KM, Hether TD, Eastman JM, Pennell MW, Harmon LJ.

Evol Biol. 2012 Jun;39(2):255-261. Epub 2012 Mar 14.


Novel Fusarium head blight pathogens from Nepal and Louisiana revealed by multilocus genealogical concordance.

Sarver BA, Ward TJ, Gale LR, Broz K, Kistler HC, Aoki T, Nicholson P, Carter J, O'Donnell K.

Fungal Genet Biol. 2011 Dec;48(12):1096-107. doi: 10.1016/j.fgb.2011.09.002. Epub 2011 Oct 7.


Internet-accessible DNA sequence database for identifying fusaria from human and animal infections.

O'Donnell K, Sutton DA, Rinaldi MG, Sarver BA, Balajee SA, Schroers HJ, Summerbell RC, Robert VA, Crous PW, Zhang N, Aoki T, Jung K, Park J, Lee YH, Kang S, Park B, Geiser DM.

J Clin Microbiol. 2010 Oct;48(10):3708-18. doi: 10.1128/JCM.00989-10. Epub 2010 Aug 4.


Ecological opportunity and the origin of adaptive radiations.

Yoder JB, Clancey E, Des Roches S, Eastman JM, Gentry L, Godsoe W, Hagey TJ, Jochimsen D, Oswald BP, Robertson J, Sarver BA, Schenk JJ, Spear SF, Harmon LJ.

J Evol Biol. 2010 Aug;23(8):1581-96. doi: 10.1111/j.1420-9101.2010.02029.x. Epub 2010 Jun 17. Review.


Soybean sudden death syndrome species diversity within north and South america revealed by multilocus genotyping.

O'Donnell K, Sink S, Scandiani MM, Luque A, Colletto A, Biasoli M, Lenzi L, Salas G, González V, Ploper LD, Formento N, Pioli RN, Aoki T, Yang XB, Sarver BA.

Phytopathology. 2010 Jan;100(1):58-71. doi: 10.1094/PHYTO-100-1-0058.


A two-locus DNA sequence database for typing plant and human pathogens within the Fusarium oxysporum species complex.

O'Donnell K, Gueidan C, Sink S, Johnston PR, Crous PW, Glenn A, Riley R, Zitomer NC, Colyer P, Waalwijk C, Lee Tv, Moretti A, Kang S, Kim HS, Geiser DM, Juba JH, Baayen RP, Cromey MG, Bithell S, Sutton DA, Skovgaard K, Ploetz R, Corby Kistler H, Elliott M, Davis M, Sarver BA.

Fungal Genet Biol. 2009 Dec;46(12):936-48. doi: 10.1016/j.fgb.2009.08.006. Epub 2009 Aug 26.


Phylogenetic diversity and microsphere array-based genotyping of human pathogenic Fusaria, including isolates from the multistate contact lens-associated U.S. keratitis outbreaks of 2005 and 2006.

O'Donnell K, Sarver BA, Brandt M, Chang DC, Noble-Wang J, Park BJ, Sutton DA, Benjamin L, Lindsley M, Padhye A, Geiser DM, Ward TJ.

J Clin Microbiol. 2007 Jul;45(7):2235-48. Epub 2007 May 16.

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