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Items: 35

1.

Leaderless Transcripts and Small Proteins Are Common Features of the Mycobacterial Translational Landscape.

Shell SS, Wang J, Lapierre P, Mir M, Chase MR, Pyle MM, Gawande R, Ahmad R, Sarracino DA, Ioerger TR, Fortune SM, Derbyshire KM, Wade JT, Gray TA.

PLoS Genet. 2015 Nov 4;11(11):e1005641. doi: 10.1371/journal.pgen.1005641. eCollection 2015 Nov.

2.

Proteomic signatures of serum albumin-bound proteins from stroke patients with and without endovascular closure of PFO are significantly different and suggest a novel mechanism for cholesterol efflux.

Lopez MF, Krastins B, Sarracino DA, Byram G, Vogelsang MS, Prakash A, Peterman S, Ahmad S, Vadali G, Deng W, Inglessis I, Wickham T, Feeney K, Dec GW, Palacios I, Buonanno FS, Lo EH, Ning M.

Clin Proteomics. 2015 Jan 13;12(1):2. doi: 10.1186/1559-0275-12-2. eCollection 2015.

3.

The Escherichia coli O157:H7 cattle immunoproteome includes outer membrane protein A (OmpA), a modulator of adherence to bovine rectoanal junction squamous epithelial (RSE) cells.

Kudva IT, Krastins B, Torres AG, Griffin RW, Sheng H, Sarracino DA, Hovde CJ, Calderwood SB, John M.

Proteomics. 2015 Jun;15(11):1829-42. doi: 10.1002/pmic.201400432. Epub 2015 Mar 9.

4.

The ESX system in Bacillus subtilis mediates protein secretion.

Huppert LA, Ramsdell TL, Chase MR, Sarracino DA, Fortune SM, Burton BM.

PLoS One. 2014 May 5;9(5):e96267. doi: 10.1371/journal.pone.0096267. eCollection 2014.

5.

Rapid development of sensitive, high-throughput, quantitative and highly selective mass spectrometric targeted immunoassays for clinically important proteins in human plasma and serum.

Krastins B, Prakash A, Sarracino DA, Nedelkov D, Niederkofler EE, Kiernan UA, Nelson R, Vogelsang MS, Vadali G, Garces A, Sutton JN, Peterman S, Byram G, Darbouret B, Pérusse JR, Seidah NG, Coulombe B, Gobom J, Portelius E, Pannee J, Blennow K, Kulasingam V, Couchman L, Moniz C, Lopez MF.

Clin Biochem. 2013 Apr;46(6):399-410. doi: 10.1016/j.clinbiochem.2012.12.019. Epub 2013 Jan 8.

6.

Heart-brain signaling in patent foramen ovale-related stroke: differential plasma proteomic expression patterns revealed with a 2-pass liquid chromatography-tandem mass spectrometry discovery workflow.

Lopez MF, Sarracino DA, Vogelsang M, Sutton JN, Athanas M, Krastins B, Garces A, Prakash A, Peterman S, Demirjian Z, Inglessis-Azuaje I, Feeney K, Elia M, McMullin D, Dec GW, Palacios I, Lo EH, Buonanno F, Ning M.

J Investig Med. 2012 Dec;60(8):1122-30. doi: 10.2310/JIM.0b013e318276de0e.

7.

Proteins other than the locus of enterocyte effacement-encoded proteins contribute to Escherichia coli O157:H7 adherence to bovine rectoanal junction stratified squamous epithelial cells.

Kudva IT, Griffin RW, Krastins B, Sarracino DA, Calderwood SB, John M.

BMC Microbiol. 2012 Jun 12;12:103. doi: 10.1186/1471-2180-12-103.

8.

Discrimination of ischemic and hemorrhagic strokes using a multiplexed, mass spectrometry-based assay for serum apolipoproteins coupled to multi-marker ROC algorithm.

Lopez MF, Sarracino DA, Prakash A, Athanas M, Krastins B, Rezai T, Sutton JN, Peterman S, Gvozdyak O, Chou S, Lo E, Buonanno F, Ning M.

Proteomics Clin Appl. 2012 Apr;6(3-4):190-200. doi: 10.1002/prca.201100041.

9.

Proteomic Protease Substrate Profiling of tPA Treatment in Acute Ischemic Stroke Patients: A Step Toward Individualizing Thrombolytic Therapy at the Bedside.

Ning M, Sarracino DA, Buonanno FS, Krastins B, Chou S, McMullin D, Wang X, Lopez M, Lo EH.

Transl Stroke Res. 2010 Dec 1;1(4):268-75. doi: 10.1007/s12975-010-0047-z.

10.

Interferon-γ and proliferation responses to Salmonella enterica Serotype Typhi proteins in patients with S. Typhi Bacteremia in Dhaka, Bangladesh.

Sheikh A, Khanam F, Sayeed MA, Rahman T, Pacek M, Hu Y, Rollins A, Bhuiyan MS, Rollins S, Kalsy A, Arifuzzaman M, Leung DT, Sarracino DA, Krastins B, Charles RC, Larocque RC, Cravioto A, Calderwood SB, Brooks WA, Harris JB, Labaer J, Qadri F, Ryan ET.

PLoS Negl Trop Dis. 2011 Jun;5(6):e1193. doi: 10.1371/journal.pntd.0001193. Epub 2011 Jun 7.

11.

Proteomic temporal profile of human brain endothelium after oxidative stress.

Ning M, Sarracino DA, Kho AT, Guo S, Lee SR, Krastins B, Buonanno FS, Vizcaíno JA, Orchard S, McMullin D, Wang X, Lo EH.

Stroke. 2011 Jan;42(1):37-43. doi: 10.1161/STROKEAHA.110.585703. Epub 2010 Dec 16.

12.

EspA acts as a critical mediator of ESX1-dependent virulence in Mycobacterium tuberculosis by affecting bacterial cell wall integrity.

Garces A, Atmakuri K, Chase MR, Woodworth JS, Krastins B, Rothchild AC, Ramsdell TL, Lopez MF, Behar SM, Sarracino DA, Fortune SM.

PLoS Pathog. 2010 Jun 24;6(6):e1000957. doi: 10.1371/journal.ppat.1000957.

13.

Characterization of anti-Salmonella enterica serotype Typhi antibody responses in bacteremic Bangladeshi patients by an immunoaffinity proteomics-based technology.

Charles RC, Sheikh A, Krastins B, Harris JB, Bhuiyan MS, LaRocque RC, Logvinenko T, Sarracino DA, Kudva IT, Eisenstein J, Podolsky MJ, Kalsy A, Brooks WA, Ludwig A, John M, Calderwood SB, Qadri F, Ryan ET.

Clin Vaccine Immunol. 2010 Aug;17(8):1188-95. doi: 10.1128/CVI.00104-10. Epub 2010 Jun 23.

14.

Mass spectrometric discovery and selective reaction monitoring (SRM) of putative protein biomarker candidates in first trimester Trisomy 21 maternal serum.

Lopez MF, Kuppusamy R, Sarracino DA, Prakash A, Athanas M, Krastins B, Rezai T, Sutton JN, Peterman S, Nicolaides K.

J Proteome Res. 2011 Jan 7;10(1):133-42. doi: 10.1021/pr100153j. Epub 2010 Jun 4.

PMID:
20499897
15.

Interferon-stimulated gene 15 (ISG15) conjugates proteins in dermatomyositis muscle with perifascicular atrophy.

Salajegheh M, Kong SW, Pinkus JL, Walsh RJ, Liao A, Nazareno R, Amato AA, Krastins B, Morehouse C, Higgs BW, Jallal B, Yao Y, Sarracino DA, Parker KC, Greenberg SA.

Ann Neurol. 2010 Jan;67(1):53-63. doi: 10.1002/ana.21805.

16.

Selected reaction monitoring-mass spectrometric immunoassay responsive to parathyroid hormone and related variants.

Lopez MF, Rezai T, Sarracino DA, Prakash A, Krastins B, Athanas M, Singh RJ, Barnidge DR, Oran P, Borges C, Nelson RW.

Clin Chem. 2010 Feb;56(2):281-90. doi: 10.1373/clinchem.2009.137323. Epub 2009 Dec 18.

17.

Comparative proteomic analysis of the PhoP regulon in Salmonella enterica serovar Typhi versus Typhimurium.

Charles RC, Harris JB, Chase MR, Lebrun LM, Sheikh A, LaRocque RC, Logvinenko T, Rollins SM, Tarique A, Hohmann EL, Rosenberg I, Krastins B, Sarracino DA, Qadri F, Calderwood SB, Ryan ET.

PLoS One. 2009 Sep 10;4(9):e6994. doi: 10.1371/journal.pone.0006994.

18.

Characterization of human skeletal muscle biopsy samples using shotgun proteomics.

Parker KC, Walsh RJ, Salajegheh M, Amato AA, Krastins B, Sarracino DA, Greenberg SA.

J Proteome Res. 2009 Jul;8(7):3265-77. doi: 10.1021/pr800873q.

PMID:
19382779
19.

Fast-twitch sarcomeric and glycolytic enzyme protein loss in inclusion body myositis.

Parker KC, Kong SW, Walsh RJ; Bch, Salajegheh M, Moghadaszadeh B, Amato AA, Nazareno R, Lin YY, Krastins B, Sarracino DA, Beggs AH, Pinkus JL, Greenberg SA.

Muscle Nerve. 2009 Jun;39(6):739-53. doi: 10.1002/mus.21230.

20.

Comprehensive proteome analysis of an Apc mouse model uncovers proteins associated with intestinal tumorigenesis.

Hung KE, Faca V, Song K, Sarracino DA, Richard LG, Krastins B, Forrester S, Porter A, Kunin A, Mahmood U, Haab BB, Hanash SM, Kucherlapati R.

Cancer Prev Res (Phila). 2009 Mar;2(3):224-33. doi: 10.1158/1940-6207.CAPR-08-0153. Epub 2009 Feb 24.

21.

Direct quantification of CSF alpha-synuclein by ELISA and first cross-sectional study in patients with neurodegeneration.

Mollenhauer B, Cullen V, Kahn I, Krastins B, Outeiro TF, Pepivani I, Ng J, Schulz-Schaeffer W, Kretzschmar HA, McLean PJ, Trenkwalder C, Sarracino DA, Vonsattel JP, Locascio JJ, El-Agnaf OM, Schlossmacher MG.

Exp Neurol. 2008 Oct;213(2):315-25. doi: 10.1016/j.expneurol.2008.06.004. Epub 2008 Jun 14.

PMID:
18625222
22.

High abundance synovial fluid proteome: distinct profiles in health and osteoarthritis.

Gobezie R, Kho A, Krastins B, Sarracino DA, Thornhill TS, Chase M, Millett PJ, Lee DM.

Arthritis Res Ther. 2007;9(2):R36.

23.

Proteomics-based expression library screening (PELS): a novel method for rapidly defining microbial immunoproteomes.

Kudva IT, Krastins B, Sheng H, Griffin RW, Sarracino DA, Tarr PI, Hovde CJ, Calderwood SB, John M.

Mol Cell Proteomics. 2006 Aug;5(8):1514-9. Epub 2006 May 31.

24.

Cochlin immunostaining of inner ear pathologic deposits and proteomic analysis in DFNA9 deafness and vestibular dysfunction.

Robertson NG, Cremers CW, Huygen PL, Ikezono T, Krastins B, Kremer H, Kuo SF, Liberman MC, Merchant SN, Miller CE, Nadol JB Jr, Sarracino DA, Verhagen WI, Morton CC.

Hum Mol Genet. 2006 Apr 1;15(7):1071-85. Epub 2006 Feb 15.

PMID:
16481359
25.

MapQuant: open-source software for large-scale protein quantification.

Leptos KC, Sarracino DA, Jaffe JD, Krastins B, Church GM.

Proteomics. 2006 Mar;6(6):1770-82.

PMID:
16470651
26.

Efficient method for the proteomic analysis of fixed and embedded tissues.

Palmer-Toy DE, Krastins B, Sarracino DA, Nadol JB Jr, Merchant SN.

J Proteome Res. 2005 Nov-Dec;4(6):2404-11.

PMID:
16335994
27.

Purification of ATP-binding cassette transporter A1 and associated binding proteins reveals the importance of beta1-syntrophin in cholesterol efflux.

Okuhira K, Fitzgerald ML, Sarracino DA, Manning JJ, Bell SA, Goss JL, Freeman MW.

J Biol Chem. 2005 Nov 25;280(47):39653-64. Epub 2005 Sep 28.

28.

Mutually dependent secretion of proteins required for mycobacterial virulence.

Fortune SM, Jaeger A, Sarracino DA, Chase MR, Sassetti CM, Sherman DR, Bloom BR, Rubin EJ.

Proc Natl Acad Sci U S A. 2005 Jul 26;102(30):10676-81. Epub 2005 Jul 19.

29.

A genotyping strategy based on incorporation and cleavage of chemically modified nucleotides.

Wolfe JL, Kawate T, Sarracino DA, Zillmann M, Olson J, Stanton VP Jr, Verdine GL.

Proc Natl Acad Sci U S A. 2002 Aug 20;99(17):11073-8. Epub 2002 Aug 8.

30.

Synthesis and nuclease stability of trilysyl dendrimer-oligodeoxyribonucleotide hybrids.

Sarracino DA, Richert C.

Bioorg Med Chem Lett. 2001 Jul 9;11(13):1733-6.

PMID:
11425548
31.

Phyloproteomics: species identification of Enterobacteriaceae using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.

Conway GC, Smole SC, Sarracino DA, Arbeit RD, Leopold PE.

J Mol Microbiol Biotechnol. 2001 Jan;3(1):103-12.

PMID:
11200222
32.

Rapid genotyping by MALDI-monitored nuclease selection from probe libraries.

Stoerker J, Mayo JD, Tetzlaff CN, Sarracino DA, Schwope I, Richert C.

Nat Biotechnol. 2000 Nov;18(11):1213-6.

PMID:
11062445
33.

Direct acquisition of matrix-assisted laser Desorption/Ionization time-of-flight mass spectra from laser capture microdissected tissues

Palmer-Toy DE, Sarracino DA, Sgroi D, LeVangie R, Leopold PE.

Clin Chem. 2000 Sep;46(9):1513-6. No abstract available.

34.

Selection of modified oligonucleotides with increased target affinity via MALDI-monitored nuclease survival assays.

Altman RK, Schwope I, Sarracino DA, Tetzlaff CN, Bleczinski CF, Richert C.

J Comb Chem. 1999 Nov-Dec;1(6):493-508.

PMID:
10748727
35.

5'-Peptidyl substituents allow a tuning of the affinity of oligodeoxyribonucleotides for RNA.

Sarracino DA, Steinberg JA, Vergo MT, Woodworth GF, Tetzlaff CN, Richert C.

Bioorg Med Chem Lett. 1998 Sep 22;8(18):2511-6.

PMID:
9873571

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