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Items: 1 to 50 of 55

1.

Combined Androgen Blockade in Localized Prostate Cancer Treated With Definitive Radiation Therapy.

Vitzthum LK, Straka C, Sarkar RR, McKay R, Randall JM, Sandhu A, Murphy JD, Rose BS.

J Natl Compr Canc Netw. 2019 Dec;17(12):1497-1504. doi: 10.6004/jnccn.2019.7335.

PMID:
31805534
2.

Association of Treatment With 5α-Reductase Inhibitors and Prostate Cancer Mortality Among Older Adults.

Kumar A, Nalawade V, Riviere P, Sarkar RR, Parsons JK, Murphy JD, Rose BS.

JAMA Netw Open. 2019 Oct 2;2(10):e1913612. doi: 10.1001/jamanetworkopen.2019.13612. No abstract available.

3.

Tobacco smoking and death from prostate cancer in US veterans.

Riviere P, Kumar A, Luterstein E, Vitzthum LK, Nalawade V, Sarkar RR, Bryant AK, Einck JP, Mundt AJ, Murphy JD, Rose BS.

Prostate Cancer Prostatic Dis. 2019 Oct 17. doi: 10.1038/s41391-019-0178-6. [Epub ahead of print]

PMID:
31624316
4.

Molecular basis of drug resistance in smoothened receptor: An in silico study of protein resistivity and specificity.

Sinha N, Chowdhury S, Sarkar RR.

Proteins. 2019 Oct 7. doi: 10.1002/prot.25830. [Epub ahead of print]

PMID:
31589795
5.

Benefits of Targeted Use of 5α-Reductase Inhibitors in Patients With Prostate Cancer-Reply.

Sarkar RR, Rose BS.

JAMA Intern Med. 2019 Oct 1;179(10):1442. doi: 10.1001/jamainternmed.2019.3890. No abstract available.

PMID:
31589266
6.

5α-Reductase Inhibitor Use in Patients With Prostate Cancer-Reply.

Sarkar RR, Rose BS.

JAMA Intern Med. 2019 Oct 1;179(10):1440-1441. doi: 10.1001/jamainternmed.2019.3620. No abstract available.

PMID:
31589264
7.

Association between Radical Prostatectomy and Survival in Men with Clinically Node-positive Prostate Cancer.

Sarkar RR, Bryant AK, Parsons JK, Ryan ST, Karim Kader A, Kane CJ, McKay RR, Sandhu A, Murphy JD, Rose BS.

Eur Urol Oncol. 2019 Sep;2(5):584-588. doi: 10.1016/j.euo.2018.09.015. Epub 2018 Oct 19.

PMID:
31411995
8.

Exploring Notch Pathway to Elucidate Phenotypic Plasticity and Intra-tumor Heterogeneity in Gliomas.

Chowdhury S, Sarkar RR.

Sci Rep. 2019 Jul 1;9(1):9488. doi: 10.1038/s41598-019-45892-8.

9.

A Population-Based Study of Morbidity After Pancreatic Cancer Diagnosis.

Sarkar RR, Fero KE, Seible DM, Panjwani N, Matsuno RK, Murphy JD.

J Natl Compr Canc Netw. 2019 May 1;17(5):432-440. doi: 10.6004/jnccn.2018.7111.

PMID:
31085756
10.

Association of Treatment With 5α-Reductase Inhibitors With Time to Diagnosis and Mortality in Prostate Cancer.

Sarkar RR, Parsons JK, Bryant AK, Ryan ST, Kader AK, McKay RR, D'Amico AV, Nguyen PL, Hulley BJ, Einck JP, Mundt AJ, Kane CJ, Murphy JD, Rose BS.

JAMA Intern Med. 2019 Jun 1;179(6):812-819. doi: 10.1001/jamainternmed.2019.0280.

PMID:
31058923
11.

Effect of copper contamination on zooplankton epidemics.

Banerjee S, Sarkar RR, Chattopadhyay J.

J Theor Biol. 2019 May 21;469:61-74. doi: 10.1016/j.jtbi.2019.02.016. Epub 2019 Feb 25.

PMID:
30817925
12.

Androgen deprivation therapy and depression in men with prostate cancer treated with definitive radiation therapy.

Deka R, Rose BS, Bryant AK, Sarkar RR, Nalawade V, McKay R, Murphy JD, Simpson DR.

Cancer. 2019 Apr 1;125(7):1070-1080. doi: 10.1002/cncr.31982. Epub 2019 Feb 12.

PMID:
30748008
13.

Cost-Effectiveness of Chimeric Antigen Receptor T-Cell Therapy in Pediatric Relapsed/Refractory B-Cell Acute Lymphoblastic Leukemia.

Sarkar RR, Gloude NJ, Schiff D, Murphy JD.

J Natl Cancer Inst. 2018 Dec 14. doi: 10.1093/jnci/djy193. [Epub ahead of print]

PMID:
30551196
14.

The impact of traveling distance and hospital volume on post-surgical outcomes for patients with glioblastoma.

Lopez Ramos C, Brandel MG, Steinberg JA, Wali AR, Rennert RC, Santiago-Dieppa DR, Sarkar RR, Pannell JS, Murphy JD, Khalessi AA.

J Neurooncol. 2019 Jan;141(1):159-166. doi: 10.1007/s11060-018-03022-w. Epub 2018 Nov 20.

PMID:
30460629
15.

Perspectives on Leishmania Species and Stage-specific Adaptive Mechanisms.

Subramanian A, Sarkar RR.

Trends Parasitol. 2018 Dec;34(12):1068-1081. doi: 10.1016/j.pt.2018.09.004. Epub 2018 Oct 11. Review.

PMID:
30318316
16.

Exploring immuno-regulatory mechanisms in the tumor microenvironment: Model and design of protocols for cancer remission.

Ganguli P, Sarkar RR.

PLoS One. 2018 Sep 5;13(9):e0203030. doi: 10.1371/journal.pone.0203030. eCollection 2018.

17.

Machine learning prediction of interaction energies in rigid water clusters.

Bose S, Dhawan D, Nandi S, Sarkar RR, Ghosh D.

Phys Chem Chem Phys. 2018 Sep 12;20(35):22987-22996. doi: 10.1039/c8cp03138j.

PMID:
30156235
18.

Evolutionary Perspectives of Genotype-Phenotype Factors in Leishmania Metabolism.

Subramanian A, Sarkar RR.

J Mol Evol. 2018 Aug;86(7):443-456. doi: 10.1007/s00239-018-9857-5. Epub 2018 Jul 19.

PMID:
30022295
19.

Clinical Impact of Local Progression in Pancreatic Cancer.

Cardillo N, Seible DM, Fero KE, Bruggeman AR, Sarkar RR, Azuara A, Simpson DR, Murphy JD.

J Natl Compr Canc Netw. 2018 Jun;16(6):711-717. doi: 10.6004/jnccn.2018.7013.

PMID:
29891522
20.

Management of glioblastoma at safety-net hospitals.

Brandel MG, Rennert RC, Lopez Ramos C, Santiago-Dieppa DR, Steinberg JA, Sarkar RR, Wali AR, Pannell JS, Murphy JD, Khalessi AA.

J Neurooncol. 2018 Sep;139(2):389-397. doi: 10.1007/s11060-018-2875-8. Epub 2018 Apr 24.

PMID:
29691776
21.

BIOPYDB: A Dynamic Human Cell Specific Biochemical Pathway Database with Advanced Computational Analyses Platform.

Chowdhury S, Sinha N, Ganguli P, Bhowmick R, Singh V, Nandi S, Sarkar RR.

J Integr Bioinform. 2018 Mar 16;15(3). pii: /j/jib.2018.15.issue-3/jib-2017-0072/jib-2017-0072.xml. doi: 10.1515/jib-2017-0072.

22.

Integrative Approaches to Understand the Mastery in Manipulation of Host Cytokine Networks by Protozoan Parasites with Emphasis on Plasmodium and Leishmania Species.

Mahanta A, Ganguli P, Barah P, Sarkar RR, Sarmah N, Phukan S, Bora M, Baruah S.

Front Immunol. 2018 Feb 23;9:296. doi: 10.3389/fimmu.2018.00296. eCollection 2018. Review.

23.

Exploring the role of GS-GOGAT cycle in microcystin synthesis and regulation - a model based analysis.

Banerjee S, Subramanian A, Chattopadhyay J, Sarkar RR.

Mol Biosyst. 2017 Nov 21;13(12):2603-2614. doi: 10.1039/c7mb00342k.

PMID:
29034927
24.

Revealing the mystery of metabolic adaptations using a genome scale model of Leishmania infantum.

Subramanian A, Sarkar RR.

Sci Rep. 2017 Aug 31;7(1):10262. doi: 10.1038/s41598-017-10743-x.

25.

Deciphering structural stability and binding mechanisms of potential antagonists with smoothened protein.

Sinha N, Chowdhury S, Sarkar RR.

J Biomol Struct Dyn. 2018 Aug;36(11):2917-2937. doi: 10.1080/07391102.2017.1372310. Epub 2017 Sep 14.

PMID:
28849750
26.

An integrative machine learning strategy for improved prediction of essential genes in Escherichia coli metabolism using flux-coupled features.

Nandi S, Subramanian A, Sarkar RR.

Mol Biosyst. 2017 Jul 25;13(8):1584-1596. doi: 10.1039/c7mb00234c.

PMID:
28671706
27.

Optimal combinations of control strategies and cost-effective analysis for visceral leishmaniasis disease transmission.

Biswas S, Subramanian A, ELMojtaba IM, Chattopadhyay J, Sarkar RR.

PLoS One. 2017 Feb 21;12(2):e0172465. doi: 10.1371/journal.pone.0172465. eCollection 2017.

28.

Identification of Th1/Th2 regulatory switch to promote healing response during leishmaniasis: a computational approach.

Ganguli P, Chowdhury S, Chowdhury S, Sarkar RR.

EURASIP J Bioinform Syst Biol. 2015 Dec 1;2015(1):13. eCollection 2015 Dec.

29.

Exploring the differences in metabolic behavior of astrocyte and glioblastoma: a flux balance analysis approach.

Bhowmick R, Subramanian A, Sarkar RR.

Syst Synth Biol. 2015 Dec;9(4):159-177. doi: 10.1007/s11693-015-9183-9. Epub 2015 Oct 13.

30.
31.

Dissecting Leishmania infantum Energy Metabolism - A Systems Perspective.

Subramanian A, Jhawar J, Sarkar RR.

PLoS One. 2015 Sep 14;10(9):e0137976. doi: 10.1371/journal.pone.0137976. eCollection 2015.

32.

Osteoid producing primary lesion at morphologic and biologic interface.

Sarkar RR.

Clin Cases Miner Bone Metab. 2015 Jan-Apr;12(1):52-5. doi: 10.11138/ccmbm/2015.12.1.052.

33.

Comparison of codon usage bias across Leishmania and Trypanosomatids to understand mRNA secondary structure, relative protein abundance and pathway functions.

Subramanian A, Sarkar RR.

Genomics. 2015 Oct;106(4):232-41. doi: 10.1016/j.ygeno.2015.05.009. Epub 2015 Jun 2.

34.

Comparison of human cell signaling pathway databases--evolution, drawbacks and challenges.

Chowdhury S, Sarkar RR.

Database (Oxford). 2015 Jan 28;2015. pii: bau126. doi: 10.1093/database/bau126. Print 2015. Review.

35.

Oncologic profile of maxillary odontogenic myxoma: A rare case.

Sarkar RR.

Contemp Clin Dent. 2013 Jul;4(3):374-7. doi: 10.4103/0976-237X.118351.

36.

A realistic host-vector transmission model for describing malaria prevalence pattern.

Mandal S, Sinha S, Sarkar RR.

Bull Math Biol. 2013 Dec;75(12):2499-528.

PMID:
24122398
37.

Structural and logical analysis of a comprehensive hedgehog signaling pathway to identify alternative drug targets for glioma, colon and pancreatic cancer.

Chowdhury S, Pradhan RN, Sarkar RR.

PLoS One. 2013 Jul 23;8(7):e69132. doi: 10.1371/journal.pone.0069132. Print 2013.

38.

Visceral leishmaniasis in the Indian subcontinent: modelling epidemiology and control.

Stauch A, Sarkar RR, Picado A, Ostyn B, Sundar S, Rijal S, Boelaert M, Dujardin JC, Duerr HP.

PLoS Negl Trop Dis. 2011 Nov;5(11):e1405. doi: 10.1371/journal.pntd.0001405. Epub 2011 Nov 29.

39.

Theoretical investigation of malaria prevalence in two Indian cities using the response surface method.

Roy SB, Sarkar RR, Sinha S.

Malar J. 2011 Oct 14;10:301. doi: 10.1186/1475-2875-10-301.

40.

Mathematical models of malaria--a review.

Mandal S, Sarkar RR, Sinha S.

Malar J. 2011 Jul 21;10:202. doi: 10.1186/1475-2875-10-202. Review.

41.

Ingested metallic foreign body lodged in the appendix.

Sarkar RR, Bisht J, Sinha Roy SK.

J Indian Assoc Pediatr Surg. 2011 Jan;16(1):29-30. doi: 10.4103/0971-9261.74520.

42.

Design of regulation and dynamics in simple biochemical pathways.

Sarkar RR, Maithreye R, Sinha S.

J Math Biol. 2011 Aug;63(2):283-307. doi: 10.1007/s00285-010-0375-3. Epub 2010 Oct 19.

PMID:
20957370
43.

Multi-step polynomial regression method to model and forecast malaria incidence.

Chatterjee C, Sarkar RR.

PLoS One. 2009;4(3):e4726. doi: 10.1371/journal.pone.0004726. Epub 2009 Mar 6.

44.

Delay-induced transient increase and heterogeneity in gene expression in negatively auto-regulated gene circuits.

Maithreye R, Sarkar RR, Parnaik VK, Sinha S.

PLoS One. 2008 Aug 13;3(8):e2972. doi: 10.1371/journal.pone.0002972. Erratum in: PLoS ONE. 2008;3(10). doi: 10.1371/annotation/5d7be1dd-cef8-499b-bcf4-a79d69245fa7. PLoS ONE. 2008;3(10). doi: 10.1371/annotation/8243fdb8-7945-4edc-b7bd-18a56445ed57.

45.

Impacts of incubation delay on the dynamics of an eco-epidemiological system--a theoretical study.

Bairagi N, Sarkar RR, Chattopadhyay J.

Bull Math Biol. 2008 Oct;70(7):2017-38. doi: 10.1007/s11538-008-9337-y. Epub 2008 Jul 31.

PMID:
18668294
46.

Delay-induced model for tumor-immune interaction and control of malignant tumor growth.

Banerjee S, Sarkar RR.

Biosystems. 2008 Jan;91(1):268-88. Epub 2007 Oct 24.

PMID:
18083299
47.

A mathematical model on the effect of M. denticulata weed on different winter crops.

Banik P, Pramanik P, Sarkar RR, Bhattacharya S, Chattopadhayay J.

Biosystems. 2007 Nov-Dec;90(3):818-29. Epub 2007 May 10.

PMID:
17602829
49.

Cancer self remission and tumor stability-- a stochastic approach.

Sarkar RR, Banerjee S.

Math Biosci. 2005 Jul;196(1):65-81.

PMID:
15946708

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