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Items: 1 to 50 of 111


Machine learning approach to literature mining for the genetics of complex diseases.

Schuster J, Superdock M, Agudelo A, Stey P, Padbury J, Sarkar IN, Uzun A.

Database (Oxford). 2019 Jan 1;2019. pii: baz124. doi: 10.1093/database/baz124.


A Novel Machine Learning Model Developed to Assist in Patient Selection for Outpatient Total Shoulder Arthroplasty.

Biron DR, Sinha I, Kleiner JE, Aluthge DP, Goodman AD, Sarkar IN, Cohen E, Daniels AH.

J Am Acad Orthop Surg. 2019 Oct 24. doi: 10.5435/JAAOS-D-19-00395. [Epub ahead of print]


Web-Based Visualization of MeSH-Based PubMed/MEDLINE Statistics.

Restrepo MI, McGrath MC, Sarkar IN, Chen ES.

Stud Health Technol Inform. 2019 Aug 21;264:1490-1491. doi: 10.3233/SHTI190499.


Racial Representation Disparity of Population-Level Genomic Sequencing Efforts.

Kim IE Jr, Sarkar IN.

Stud Health Technol Inform. 2019 Aug 21;264:974-978. doi: 10.3233/SHTI190369.


Identifying Phytochemicals from Biomedical Literature Utilizing Semantic Knowledge Sources.

Sarkar IN, Law W, Balick MJ.

Stud Health Technol Inform. 2019 Aug 21;264:278-282. doi: 10.3233/SHTI190227.


Using Unsupervised Clustering to Identify Pregnancy Co-Morbidities.

Chang J, Sarkar IN.

AMIA Jt Summits Transl Sci Proc. 2019 May 6;2019:305-314. eCollection 2019.


Using Self Organizing Maps to Compare Sepsis Patients from the Neonatal and Adult Intensive Care Unit.

Goddard B, Chang J, Sarkar IN.

AMIA Jt Summits Transl Sci Proc. 2019 May 6;2019:127-135. eCollection 2019.


Solr-Plant: efficient extraction of plant names from text.

Sharma V, Restrepo MI, Sarkar IN.

BMC Bioinformatics. 2019 May 22;20(1):263. doi: 10.1186/s12859-019-2874-6.


Quality Informatics: The Convergence of Healthcare Data, Analytics, and Clinical Excellence.

Coppersmith NA, Sarkar IN, Chen ES.

Appl Clin Inform. 2019 Mar;10(2):272-277. doi: 10.1055/s-0039-1685221. Epub 2019 Apr 24. No abstract available.


Using Demographic Factors and Comorbidities to Develop a Predictive Model for ICU Mortality in Patients with Acute Exacerbation COPD.

Jain SS, Sarkar IN, Stey PC, Anand RS, Biron DR, Chen ES.

AMIA Annu Symp Proc. 2018 Dec 5;2018:1319-1328. eCollection 2018.


Health Information Exchange in Emergency Medical Services.

Martin TJ, Ranney ML, Dorroh J, Asselin N, Sarkar IN.

Appl Clin Inform. 2018 Oct;9(4):884-891. doi: 10.1055/s-0038-1676041. Epub 2018 Dec 12. Review.


Real-Time Emergency Department Electronic Notifications Regarding High-Risk Patients: A Systematic Review.

Kimmel HJ, Brice YN, Trikalinos TA, Sarkar IN, Ranney ML.

Telemed J E Health. 2019 Jul;25(7):604-618. doi: 10.1089/tmj.2018.0117. Epub 2018 Aug 21.


Trend Analysis of Aggregate Outcomes in Complex Health Survey Data.

Durand WM, Stey PC, Chen ES, Sarkar IN.

AMIA Jt Summits Transl Sci Proc. 2018 May 18;2017:349-358. eCollection 2018.


Predicting Mortality in Diabetic ICU Patients Using Machine Learning and Severity Indices.

Anand RS, Stey P, Jain S, Biron DR, Bhatt H, Monteiro K, Feller E, Ranney ML, Sarkar IN, Chen ES.

AMIA Jt Summits Transl Sci Proc. 2018 May 18;2017:310-319. eCollection 2018.


Exploring the Potential of Direct-To-Consumer Genomic Test Data for Predicting Adverse Drug Events.

Zhang PM, Sarkar IN.

AMIA Jt Summits Transl Sci Proc. 2018 May 18;2017:247-256. eCollection 2018.


Identifying Supplement Use Within Clinical Notes: An Applicationof Natural Language Processing.

Sharma V, Sarkar IN.

AMIA Jt Summits Transl Sci Proc. 2018 May 18;2017:196-205. eCollection 2018.


Harnessing Biomedical Natural Language Processing Tools to Identify Medicinal Plant Knowledge from Historical Texts.

Sharma V, Law W, Balick MJ, Sarkar IN.

AMIA Annu Symp Proc. 2018 Apr 16;2017:1537-1546. eCollection 2017.


An Automated System for Categorizing Transthoracic Echocardiography Indications According to the Echocardiography Appropriate Use Criteria.

Eisman AS, Weiner RB, Chen ES, Stey PC, Wadhera RK, Kithcart AP, Sarkar IN.

AMIA Annu Symp Proc. 2018 Apr 16;2017:670-678. eCollection 2017.


Back on Track.

Koch S, Gefeller O, Sarkar IN, Haux R.

Methods Inf Med. 2017 Aug 11;56(4):274-275. doi: 10.3414/me17-14-0003. Epub 2017 Jul 19. No abstract available.


Crossing the health IT chasm: considerations and policy recommendations to overcome current challenges and enable value-based care.

Adler-Milstein J, Embi PJ, Middleton B, Sarkar IN, Smith J.

J Am Med Inform Assoc. 2017 Sep 1;24(5):1036-1043. doi: 10.1093/jamia/ocx017.


Research Strategies for Biomedical and Health Informatics. Some Thought-provoking and Critical Proposals to Encourage Scientific Debate on the Nature of Good Research in Medical Informatics.

Haux R, Kulikowski CA, Bakken S, de Lusignan S, Kimura M, Koch S, Mantas J, Maojo V, Marschollek M, Martin-Sanchez F, Moen A, Park HA, Sarkar IN, Leong TY, McCray AT.

Methods Inf Med. 2017 Jan 25;56(Open):e1-e10. doi: 10.3414/ME16-01-0125.


Methods Open - A New Journal Track Starting in 2017.

Koch S, Haux R, Gefeller O, Sarkar IN, Bergemann D.

Methods Inf Med. 2016 Dec 7;55(6):478-480. Epub 2016 Nov 21.


Identifying Plant-Human Disease Associations in Biomedical Literature: A Case Study.

Sharma V, Law W, Balick MJ, Sarkar IN.

AMIA Jt Summits Transl Sci Proc. 2016 Jul 19;2016:84-93. eCollection 2016.


Identifying Family History and Substance Use Associations for Adult Epilepsy from the Electronic Health Record.

Wang Y, Chen ES, Leppik I, Pakhomov S, Sarkar IN, Melton GB.

AMIA Jt Summits Transl Sci Proc. 2016 Jul 20;2016:250-9. eCollection 2016.


Discussion of "The New Role of Biomedical Informatics in the Age of Digital Medicine".

Al-Shorbaji N, Bellazzi R, Gonzalez Bernaldo de Quiros F, Koch S, Kulikowski CA, Lovell NH, Maojo V, Park HA, Sanz F, Sarkar IN, Tanaka H.

Methods Inf Med. 2016 Oct 17;55(5):403-421. Epub 2016 Aug 15.


Identifying Complementary and Alternative Medicine Usage Information from Internet Resources. A Systematic Review.

Sharma V, Holmes JH, Sarkar IN.

Methods Inf Med. 2016 Aug 5;55(4):322-32. doi: 10.3414/ME15-01-0154. Epub 2016 Jun 28. Review.


How to Prepare a Nursing Informatics Conference Submission.

Saranto K, Borycki EM, Sarkar IN.

Stud Health Technol Inform. 2016;225:703-4.


Developing new pathways into the biomedical informatics field: the AMIA High School Scholars Program.

Unertl KM, Finnell JT, Sarkar IN.

J Am Med Inform Assoc. 2016 Jul;23(4):819-23. doi: 10.1093/jamia/ocw036. Epub 2016 Apr 13.


Harnessing next-generation informatics for personalizing medicine: a report from AMIA's 2014 Health Policy Invitational Meeting.

Wiley LK, Tarczy-Hornoch P, Denny JC, Freimuth RR, Overby CL, Shah N, Martin RD, Sarkar IN.

J Am Med Inform Assoc. 2016 Mar;23(2):413-9. doi: 10.1093/jamia/ocv111. Epub 2016 Feb 5.


A Cross-Species Analysis of Animal Models for the Investigation of Preterm Birth Mechanisms.

Nielsen BW, Bonney EA, Pearce BD, Donahue LR, Sarkar IN; Preterm Birth International Collaborative (PREBIC).

Reprod Sci. 2016 Apr;23(4):482-91. doi: 10.1177/1933719115604729. Epub 2015 Sep 16. Review.


Towards the Standardized Documentation of E-Cigarette Use in the Electronic Health Record for Population Health Surveillance and Research.

Winden TJ, Chen ES, Wang Y, Sarkar IN, Carter EW, Melton GB.

AMIA Jt Summits Transl Sci Proc. 2015 Mar 25;2015:199-203. eCollection 2015.


Prevention of treatment-related fluid overload reduces estimated effective cost of prothrombin complex concentrate in patients requiring rapid vitamin K antagonist reversal.

Jones CA, Ducis K, Petrozzino J, Clark E, Fung MK, Peters C, Sarkar IN, Krol E, Pochal B, Boutrus A, Weimersheimer P, Freeman K.

Expert Rev Pharmacoecon Outcomes Res. 2016;16(1):135-9. doi: 10.1586/14737167.2015.1071194. Epub 2015 Jul 25.


*informatics: Identifying and Tracking Informatics Sub-Discipline Terms in the Literature.

Chen ES, Sarkar IN.

Methods Inf Med. 2015;54(6):530-9. doi: 10.3414/ME14-01-0088. Epub 2015 May 22.


Geospatial and Temporal Analysis of Thyroid Cancer Incidence in a Rural Population.

Hanley JP, Jackson E, Morrissey LA, Rizzo DM, Sprague BL, Sarkar IN, Carr FE.

Thyroid. 2015 Jul;25(7):812-22. doi: 10.1089/thy.2015.0039. Epub 2015 Jun 2. Erratum in: Thyroid. 2015 Dec;25(12):1385.


Adapting simultaneous analysis phylogenomic techniques to study complex disease gene relationships.

Romano JD, Tharp WG, Sarkar IN.

J Biomed Inform. 2015 Apr;54:10-38. doi: 10.1016/j.jbi.2015.01.002. Epub 2015 Jan 13.


Managing interoperability and complexity in health systems.

Bouamrane MM, Tao C, Sarkar IN.

Methods Inf Med. 2015;54(1):1-4. doi: 10.3414/ME15-10-0001.


Automated Extraction of Substance Use Information from Clinical Texts.

Wang Y, Chen ES, Pakhomov S, Arsoniadis E, Carter EW, Lindemann E, Sarkar IN, Melton GB.

AMIA Annu Symp Proc. 2015 Nov 5;2015:2121-30. eCollection 2015.


Mining and Visualizing Family History Associations in the Electronic Health Record: A Case Study for Pediatric Asthma.

Chen ES, Melton GB, Wasserman RC, Rosenau PT, Howard DB, Sarkar IN.

AMIA Annu Symp Proc. 2015 Nov 5;2015:396-405. eCollection 2015.


Representation of Drug Use in Biomedical Standards, Clinical Text, and Research Measures.

Carter EW, Sarkar IN, Melton GB, Chen ES.

AMIA Annu Symp Proc. 2015 Nov 5;2015:376-85. eCollection 2015.


Multi-source development of an integrated model for family health history.

Chen ES, Carter EW, Winden TJ, Sarkar IN, Wang Y, Melton GB.

J Am Med Inform Assoc. 2015 Apr;22(e1):e67-80. doi: 10.1136/amiajnl-2014-003092. Epub 2014 Oct 21.


Mining the electronic health record for disease knowledge.

Chen ES, Sarkar IN.

Methods Mol Biol. 2014;1159:269-86. doi: 10.1007/978-1-4939-0709-0_15. Review.


PubMedMiner: Mining and Visualizing MeSH-based Associations in PubMed.

Zhang Y, Sarkar IN, Chen ES.

AMIA Annu Symp Proc. 2014 Nov 14;2014:1990-9. eCollection 2014.


Using Arden Syntax to identify registry-eligible very low birth weight neonates from the Electronic Health Record.

Sarkar IN, Chen ES, Rosenau PT, Storer MB, Anderson B, Horbar JD.

AMIA Annu Symp Proc. 2014 Nov 14;2014:1028-36. eCollection 2014.


Examining the use, contents, and quality of free-text tobacco use documentation in the Electronic Health Record.

Chen ES, Carter EW, Sarkar IN, Winden TJ, Melton GB.

AMIA Annu Symp Proc. 2014 Nov 14;2014:366-74. eCollection 2014.


Phylogeography of influenza A H5N1 clade in Egypt.

Scotch M, Mei C, Makonnen YJ, Pinto J, Ali A, Vegso S, Kane M, Sarkar IN, Rabinowitz P.

BMC Genomics. 2013 Dec 10;14:871. doi: 10.1186/1471-2164-14-871.


Structural network analysis of biological networks for assessment of potential disease model organisms.

Nabhan AR, Sarkar IN.

J Biomed Inform. 2014 Feb;47:178-91. doi: 10.1016/j.jbi.2013.10.011. Epub 2013 Nov 5.


Bringing genome tests into clinical practice.

Sarkar IN.

Yearb Med Inform. 2013;8:172-4.


Drug repurposing: mining protozoan proteomes for targets of known bioactive compounds.

Sateriale A, Bessoff K, Sarkar IN, Huston CD.

J Am Med Inform Assoc. 2014 Mar-Apr;21(2):238-44. doi: 10.1136/amiajnl-2013-001700. Epub 2013 Jun 11.


Leveraging concept-based approaches to identify potential phyto-therapies.

Sharma V, Sarkar IN.

J Biomed Inform. 2013 Aug;46(4):602-14. doi: 10.1016/j.jbi.2013.04.008. Epub 2013 May 9.

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