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Items: 20


Impact of measurement noise, experimental design, and estimation methods on Modular Response Analysis based network reconstruction.

Thomaseth C, Fey D, Santra T, Rukhlenko OS, Radde NE, Kholodenko BN.

Sci Rep. 2018 Nov 1;8(1):16217. doi: 10.1038/s41598-018-34353-3.


Current Trends of Microfluidic Single-Cell Technologies.

Shinde P, Mohan L, Kumar A, Dey K, Maddi A, Patananan AN, Tseng FG, Chang HY, Nagai M, Santra TS.

Int J Mol Sci. 2018 Oct 12;19(10). pii: E3143. doi: 10.3390/ijms19103143. Review.


Identification of potential new treatment response markers and therapeutic targets using a Gaussian process-based method in lapatinib insensitive breast cancer models.

Santra T, Roche S, Conlon N, O'Donovan N, Crown J, O'Connor R, Kolch W.

PLoS One. 2017 May 8;12(5):e0177058. doi: 10.1371/journal.pone.0177058. eCollection 2017.


Vascular Endothelial Growth Factor (VEGF) Promotes Assembly of the p130Cas Interactome to Drive Endothelial Chemotactic Signaling and Angiogenesis.

Evans IM, Kennedy SA, Paliashvili K, Santra T, Yamaji M, Lovering RC, Britton G, Frankel P, Kolch W, Zachary IC.

Mol Cell Proteomics. 2017 Feb;16(2):168-180. doi: 10.1074/mcp.M116.064428. Epub 2016 Dec 22.


Integrating network reconstruction with mechanistic modeling to predict cancer therapies.

Halasz M, Kholodenko BN, Kolch W, Santra T.

Sci Signal. 2016 Nov 22;9(455):ra114.


Deep vein thrombosis in a patient of adenomatous polyposis coli treated successfully with aspirin: A case report.

Agrawal N, Santra T, Kar A, Guha P, Bar M, Adhikary A, Datta S.

Caspian J Intern Med. 2016 Spring;7(2):142-5.


Concurrent meningitis and vivax malaria.

Santra T, Datta S, Agrawal N, Bar M, Kar A, Adhikary A, Ranjan K.

J Family Med Prim Care. 2015 Oct-Dec;4(4):594-5. doi: 10.4103/2249-4863.174301.


Multifocal Tubercular Osteomyelitis with Tubercular Breast Abscess: An Atypical Presentation of Tuberculosis.

Bar M, Santra T, Guha P, Agrawal N, Adhikary A, Das A, Mahapatra C.

Case Rep Infect Dis. 2015;2015:629141. doi: 10.1155/2015/629141. Epub 2015 May 4.


Silence on the relevant literature and errors in implementation.

Bastiaens P, Birtwistle MR, Blüthgen N, Bruggeman FJ, Cho KH, Cosentino C, de la Fuente A, Hoek JB, Kiyatkin A, Klamt S, Kolch W, Legewie S, Mendes P, Naka T, Santra T, Sontag E, Westerhoff HV, Kholodenko BN.

Nat Biotechnol. 2015 Apr;33(4):336-9. doi: 10.1038/nbt.3185. No abstract available.


Impact of pulse duration on localized single-cell nano-electroporation.

Santra TS, Chang HY, Wang PC, Tseng FG.

Analyst. 2014 Dec 7;139(23):6249-58. doi: 10.1039/c4an01050g. Epub 2014 Oct 16.


Primary cilium-associated genes mediate bone marrow stromal cell response to hypoxia.

Brown JA, Santra T, Owens P, Morrison AM, Barry F.

Stem Cell Res. 2014 Sep;13(2):284-99. doi: 10.1016/j.scr.2014.06.006. Epub 2014 Jul 8.


A bayesian framework that integrates heterogeneous data for inferring gene regulatory networks.

Santra T.

Front Bioeng Biotechnol. 2014 May 20;2:13. doi: 10.3389/fbioe.2014.00013. eCollection 2014. Review.


Navigating the multilayered organization of eukaryotic signaling: a new trend in data integration.

Santra T, Kolch W, Kholodenko BN.

PLoS Comput Biol. 2014 Feb 13;10(2):e1003385. doi: 10.1371/journal.pcbi.1003385. eCollection 2014 Feb. Review.


Integrating Bayesian variable selection with Modular Response Analysis to infer biochemical network topology.

Santra T, Kolch W, Kholodenko BN.

BMC Syst Biol. 2013 Jul 6;7:57. doi: 10.1186/1752-0509-7-57.


Sweet's syndrome: a very rare association with pulmonary tuberculosis.

Karmakar PS, Sherpa PL, Ray AN, Saha BK, Santra T, Saha S, Chakrabarti I.

J Infect Dev Ctries. 2013 May 13;7(5):417-20. doi: 10.3855/jidc.2606.


Delivery of molecules into cells using localized single cell electroporation on ITO micro-electrode based transparent chip.

Chen SC, Santra TS, Chang CJ, Chen TJ, Wang PC, Tseng FG.

Biomed Microdevices. 2012 Oct;14(5):811-7. doi: 10.1007/s10544-012-9660-9.


An integrated Bayesian framework for identifying phosphorylation networks in stimulated cells.

Santra T, Kholodenko B, Kolch W.

Adv Exp Med Biol. 2012;736:59-80. doi: 10.1007/978-1-4419-7210-1_3.


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