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Items: 41

1.

Whole-genome sequence analysis of a Pan African set of samples reveals archaic gene flow from an extinct basal population of modern humans into sub-Saharan populations.

Lorente-Galdos B, Lao O, Serra-Vidal G, Santpere G, Kuderna LFK, Arauna LR, Fadhlaoui-Zid K, Pimenoff VN, Soodyall H, Zalloua P, Marques-Bonet T, Comas D.

Genome Biol. 2019 Apr 26;20(1):77. doi: 10.1186/s13059-019-1684-5.

2.

Spatiotemporal transcriptomic divergence across human and macaque brain development.

Zhu Y, Sousa AMM, Gao T, Skarica M, Li M, Santpere G, Esteller-Cucala P, Juan D, Ferrández-Peral L, Gulden FO, Yang M, Miller DJ, Marques-Bonet T, Imamura Kawasawa Y, Zhao H, Sestan N.

Science. 2018 Dec 14;362(6420). pii: eaat8077. doi: 10.1126/science.aat8077. Epub 2018 Dec 13.

PMID:
30545855
3.

Integrative functional genomic analysis of human brain development and neuropsychiatric risks.

Li M, Santpere G, Imamura Kawasawa Y, Evgrafov OV, Gulden FO, Pochareddy S, Sunkin SM, Li Z, Shin Y, Zhu Y, Sousa AMM, Werling DM, Kitchen RR, Kang HJ, Pletikos M, Choi J, Muchnik S, Xu X, Wang D, Lorente-Galdos B, Liu S, Giusti-Rodríguez P, Won H, de Leeuw CA, Pardiñas AF; BrainSpan Consortium; PsychENCODE Consortium; PsychENCODE Developmental Subgroup, Hu M, Jin F, Li Y, Owen MJ, O'Donovan MC, Walters JTR, Posthuma D, Reimers MA, Levitt P, Weinberger DR, Hyde TM, Kleinman JE, Geschwind DH, Hawrylycz MJ, State MW, Sanders SJ, Sullivan PF, Gerstein MB, Lein ES, Knowles JA, Sestan N.

Science. 2018 Dec 14;362(6420). pii: eaat7615. doi: 10.1126/science.aat7615.

4.

Gene Expression Profile in Frontal Cortex in Sporadic Frontotemporal Lobar Degeneration-TDP.

Andrés-Benito P, Gelpi E, Povedano M, Santpere G, Ferrer I.

J Neuropathol Exp Neurol. 2018 Jul 1;77(7):608-627. doi: 10.1093/jnen/nly037.

PMID:
29788265
5.

Correction: Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.

Mandage R, Telford M, Rodríguez JA, Farré X, Laayouni H, Marigorta UM, Cundiff C, Heredia-Genestar JM, Navarro A, Santpere G.

PLoS One. 2018 Apr 30;13(4):e0196623. doi: 10.1371/journal.pone.0196623. eCollection 2018.

6.
7.

Whole genome diversity of inherited chromosomally integrated HHV-6 derived from healthy individuals of diverse geographic origin.

Telford M, Navarro A, Santpere G.

Sci Rep. 2018 Feb 22;8(1):3472. doi: 10.1038/s41598-018-21645-x. Erratum in: Sci Rep. 2018 Apr 17;8(1):6357.

8.

Transcriptome evolution from breast epithelial cells to basal-like tumors.

Santpere G, Alcaráz-Sanabria A, Corrales-Sánchez V, Pandiella A, Győrffy B, Ocaña A.

Oncotarget. 2017 Dec 8;9(1):453-463. doi: 10.18632/oncotarget.23065. eCollection 2018 Jan 2.

9.

Functional transcriptomic annotation and protein-protein interaction network analysis identify NEK2, BIRC5, and TOP2A as potential targets in obese patients with luminal A breast cancer.

Nuncia-Cantarero M, Martinez-Canales S, Andrés-Pretel F, Santpere G, Ocaña A, Galan-Moya EM.

Breast Cancer Res Treat. 2018 Apr;168(3):613-623. doi: 10.1007/s10549-017-4652-3. Epub 2018 Jan 12.

10.

Similar genomic proportions of copy number variation within gray wolves and modern dog breeds inferred from whole genome sequencing.

Serres-Armero A, Povolotskaya IS, Quilez J, Ramirez O, Santpere G, Kuderna LFK, Hernandez-Rodriguez J, Fernandez-Callejo M, Gomez-Sanchez D, Freedman AH, Fan Z, Novembre J, Navarro A, Boyko A, Wayne R, Vilà C, Lorente-Galdos B, Marques-Bonet T.

BMC Genomics. 2017 Dec 19;18(1):977. doi: 10.1186/s12864-017-4318-x.

11.

Evolution of the Human Nervous System Function, Structure, and Development.

Sousa AMM, Meyer KA, Santpere G, Gulden FO, Sestan N.

Cell. 2017 Jul 13;170(2):226-247. doi: 10.1016/j.cell.2017.06.036. Review.

12.

Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.

Mandage R, Telford M, Rodríguez JA, Farré X, Layouni H, Marigorta UM, Cundiff C, Heredia-Genestar JM, Navarro A, Santpere G.

PLoS One. 2017 Jun 27;12(6):e0179446. doi: 10.1371/journal.pone.0179446. eCollection 2017. Erratum in: PLoS One. 2018 Apr 30;13(4):e0196623.

13.

Erratum to: Interhemispheric gene expression differences in the cerebral cortex of humans and macaque monkeys.

Muntané G, Santpere G, Verendeev A, Seeley WW, Jacobs B, Hopkins WD, Navarro A, Sherwood CC.

Brain Struct Funct. 2017 Sep;222(7):3367-3368. doi: 10.1007/s00429-017-1433-z. No abstract available.

PMID:
28488187
14.

Transcriptional network analysis in frontal cortex in Lewy body diseases with focus on dementia with Lewy bodies.

Santpere G, Garcia-Esparcia P, Andres-Benito P, Lorente-Galdos B, Navarro A, Ferrer I.

Brain Pathol. 2018 May;28(3):315-333. doi: 10.1111/bpa.12511. Epub 2017 Apr 6.

15.

Interhemispheric gene expression differences in the cerebral cortex of humans and macaque monkeys.

Muntané G, Santpere G, Verendeev A, Seeley WW, Jacobs B, Hopkins WD, Navarro A, Sherwood CC.

Brain Struct Funct. 2017 Sep;222(7):3241-3254. doi: 10.1007/s00429-017-1401-7. Epub 2017 Mar 19. Erratum in: Brain Struct Funct. 2017 Sep;222(7):3367-3368.

16.

Natural Selection in the Great Apes.

Cagan A, Theunert C, Laayouni H, Santpere G, Pybus M, Casals F, Prüfer K, Navarro A, Marques-Bonet T, Bertranpetit J, Andrés AM.

Mol Biol Evol. 2016 Dec;33(12):3268-3283. Epub 2016 Oct 30.

17.

Differences in molecular evolutionary rates among microRNAs in the human and chimpanzee genomes.

Santpere G, Lopez-Valenzuela M, Petit-Marty N, Navarro A, Espinosa-Parrilla Y.

BMC Genomics. 2016 Jul 29;17:528. doi: 10.1186/s12864-016-2863-3.

18.

Analysis of Five Gene Sets in Chimpanzees Suggests Decoupling between the Action of Selection on Protein-Coding and on Noncoding Elements.

Santpere G, Carnero-Montoro E, Petit N, Serra F, Hvilsom C, Rambla J, Heredia-Genestar JM, Halligan DL, Dopazo H, Navarro A, Bosch E.

Genome Biol Evol. 2015 May 14;7(6):1490-505. doi: 10.1093/gbe/evv082.

19.

Genome data from a sixteenth century pig illuminate modern breed relationships.

Ramírez O, Burgos-Paz W, Casas E, Ballester M, Bianco E, Olalde I, Santpere G, Novella V, Gut M, Lalueza-Fox C, Saña M, Pérez-Enciso M.

Heredity (Edinb). 2015 Feb;114(2):175-84. doi: 10.1038/hdy.2014.81. Epub 2014 Sep 10.

20.

Genome-wide analysis of wild-type Epstein-Barr virus genomes derived from healthy individuals of the 1,000 Genomes Project.

Santpere G, Darre F, Blanco S, Alcami A, Villoslada P, Mar Albà M, Navarro A.

Genome Biol Evol. 2014 Apr;6(4):846-60. doi: 10.1093/gbe/evu054.

21.

Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European.

Olalde I, Allentoft ME, Sánchez-Quinto F, Santpere G, Chiang CW, DeGiorgio M, Prado-Martinez J, Rodríguez JA, Rasmussen S, Quilez J, Ramírez O, Marigorta UM, Fernández-Callejo M, Prada ME, Encinas JM, Nielsen R, Netea MG, Novembre J, Sturm RA, Sabeti P, Marquès-Bonet T, Navarro A, Willerslev E, Lalueza-Fox C.

Nature. 2014 Mar 13;507(7491):225-8. doi: 10.1038/nature12960. Epub 2014 Jan 26.

22.

Great ape genetic diversity and population history.

Prado-Martinez J, Sudmant PH, Kidd JM, Li H, Kelley JL, Lorente-Galdos B, Veeramah KR, Woerner AE, O'Connor TD, Santpere G, Cagan A, Theunert C, Casals F, Laayouni H, Munch K, Hobolth A, Halager AE, Malig M, Hernandez-Rodriguez J, Hernando-Herraez I, Prüfer K, Pybus M, Johnstone L, Lachmann M, Alkan C, Twigg D, Petit N, Baker C, Hormozdiari F, Fernandez-Callejo M, Dabad M, Wilson ML, Stevison L, Camprubí C, Carvalho T, Ruiz-Herrera A, Vives L, Mele M, Abello T, Kondova I, Bontrop RE, Pusey A, Lankester F, Kiyang JA, Bergl RA, Lonsdorf E, Myers S, Ventura M, Gagneux P, Comas D, Siegismund H, Blanc J, Agueda-Calpena L, Gut M, Fulton L, Tishkoff SA, Mullikin JC, Wilson RK, Gut IG, Gonder MK, Ryder OA, Hahn BH, Navarro A, Akey JM, Bertranpetit J, Reich D, Mailund T, Schierup MH, Hvilsom C, Andrés AM, Wall JD, Bustamante CD, Hammer MF, Eichler EE, Marques-Bonet T.

Nature. 2013 Jul 25;499(7459):471-5. doi: 10.1038/nature12228. Epub 2013 Jul 3.

23.
24.

Accelerated exon evolution within primate segmental duplications.

Lorente-Galdos B, Bleyhl J, Santpere G, Vives L, Ramírez O, Hernandez J, Anglada R, Cooper GM, Navarro A, Eichler EE, Marques-Bonet T.

Genome Biol. 2013 Jan 29;14(1):R9. doi: 10.1186/gb-2013-14-1-r9.

25.

Evidence for premature lipid raft aging in APP/PS1 double-transgenic mice, a model of familial Alzheimer disease.

Fabelo N, Martín V, Marín R, Santpere G, Aso E, Ferrer I, Díaz M.

J Neuropathol Exp Neurol. 2012 Oct;71(10):868-81.

PMID:
22975585
26.

Severe alterations in lipid composition of frontal cortex lipid rafts from Parkinson's disease and incidental Parkinson's disease.

Fabelo N, Martín V, Santpere G, Marín R, Torrent L, Ferrer I, Díaz M.

Mol Med. 2011 Sep-Oct;17(9-10):1107-18. doi: 10.2119/molmed.2011.00119. Epub 2011 Jun 22.

27.

Lipid alterations in lipid rafts from Alzheimer's disease human brain cortex.

Martín V, Fabelo N, Santpere G, Puig B, Marín R, Ferrer I, Díaz M.

J Alzheimers Dis. 2010;19(2):489-502. doi: 10.3233/JAD-2010-1242.

PMID:
20110596
28.

Altered distribution of RhoA in Alzheimer's disease and AbetaPP overexpressing mice.

Huesa G, Baltrons MA, Gómez-Ramos P, Morán A, García A, Hidalgo J, Francés S, Santpere G, Ferrer I, Galea E.

J Alzheimers Dis. 2010;19(1):37-56. doi: 10.3233/JAD-2010-1203.

PMID:
20061625
29.

VDAC and ERalpha interaction in caveolae from human cortex is altered in Alzheimer's disease.

Ramírez CM, González M, Díaz M, Alonso R, Ferrer I, Santpere G, Puig B, Meyer G, Marin R.

Mol Cell Neurosci. 2009 Nov;42(3):172-83. doi: 10.1016/j.mcn.2009.07.001. Epub 2009 Jul 10.

PMID:
19595769
30.
31.

Morphological alterations to neurons of the amygdala and impaired fear conditioning in a transgenic mouse model of Alzheimer's disease.

Knafo S, Venero C, Merino-Serrais P, Fernaud-Espinosa I, Gonzalez-Soriano J, Ferrer I, Santpere G, DeFelipe J.

J Pathol. 2009 Sep;219(1):41-51. doi: 10.1002/path.2565.

PMID:
19449368
32.

LRRK2 and neurodegeneration.

Santpere G, Ferrer I.

Acta Neuropathol. 2009 Mar;117(3):227-46. doi: 10.1007/s00401-008-0478-8. Epub 2009 Jan 14. Review.

PMID:
19142648
33.

Delineation of early changes in cases with progressive supranuclear palsy-like pathology. Astrocytes in striatum are primary targets of tau phosphorylation and GFAP oxidation.

Santpere G, Ferrer I.

Brain Pathol. 2009 Apr;19(2):177-87. doi: 10.1111/j.1750-3639.2008.00173.x. Epub 2008 May 6.

PMID:
18462470
34.

Coenzyme q induces tau aggregation, tau filaments, and Hirano bodies.

Santa-Mara I, Santpere G, MacDonald MJ, Gomez de Barreda E, Hernandez F, Moreno FJ, Ferrer I, Avila J.

J Neuropathol Exp Neurol. 2008 May;67(5):428-34. doi: 10.1097/NEN.0b013e31816fc9b6.

PMID:
18431254
35.

Argyrophilic grain disease.

Ferrer I, Santpere G, van Leeuwen FW.

Brain. 2008 Jun;131(Pt 6):1416-32. doi: 10.1093/brain/awm305. Epub 2008 Jan 29. Review.

PMID:
18234698
36.

C-terminal end and aminoacid Lys48 in HMG-CoA lyase are involved in substrate binding and enzyme activity.

Carrasco P, Menao S, López-Viñas E, Santpere G, Clotet J, Sierra AY, Gratacós E, Puisac B, Gómez-Puertas P, Hegardt FG, Pie J, Casals N.

Mol Genet Metab. 2007 Jun;91(2):120-7. Epub 2007 Apr 24.

PMID:
17459752
37.

Oxidative damage of 14-3-3 zeta and gamma isoforms in Alzheimer's disease and cerebral amyloid angiopathy.

Santpere G, Puig B, Ferrer I.

Neuroscience. 2007 Jun 8;146(4):1640-51. Epub 2007 Apr 19. Retraction in: Santpere G, Ferrer I. Neuroscience. 2009 Jun 30;161(2):663.

PMID:
17445990
38.

Brain protein preservation largely depends on the postmortem storage temperature: implications for study of proteins in human neurologic diseases and management of brain banks: a BrainNet Europe Study.

Ferrer I, Santpere G, Arzberger T, Bell J, Blanco R, Boluda S, Budka H, Carmona M, Giaccone G, Krebs B, Limido L, Parchi P, Puig B, Strammiello R, Ströbel T, Kretzschmar H.

J Neuropathol Exp Neurol. 2007 Jan;66(1):35-46.

PMID:
17204935
39.

Expression of transcription factors c-Fos, c-Jun, CREB-1 and ATF-2, and caspase-3 in relation with abnormal tau deposits in Pick's disease.

Nieto-Bodelón M, Santpere G, Torrejón-Escribano B, Puig B, Ferrer I.

Acta Neuropathol. 2006 Apr;111(4):341-50. Epub 2006 Feb 23.

PMID:
16496165
40.
41.

Abnormal Sp1 transcription factor expression in Alzheimer disease and tauopathies.

Santpere G, Nieto M, Puig B, Ferrer I.

Neurosci Lett. 2006 Apr 10-17;397(1-2):30-4. Epub 2005 Dec 27.

PMID:
16378688

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