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Multiscale investigation of a symbiotic microalgal-integrated fixed film activated sludge (MAIFAS) process for nutrient removal and photo-oxygenation.

Church J, Ryu H, Sadmani AHMA, Randall AA, Santo Domingo J, Lee WH.

Bioresour Technol. 2018 Nov;268:128-138. doi: 10.1016/j.biortech.2018.07.123. Epub 2018 Jul 26.


Microbial degradation of Cold Lake Blend and Western Canadian select dilbits by freshwater enrichments.

Deshpande RS, Sundaravadivelu D, Techtmann S, Conmy RN, Santo Domingo JW, Campo P.

J Hazard Mater. 2018 Jun 15;352:111-120. doi: 10.1016/j.jhazmat.2018.03.030. Epub 2018 Mar 21.


Bacterial community changes in copper and PEX drinking water pipeline biofilms under extra disinfection and magnetic water treatment.

Inkinen J, Jayaprakash B, Ahonen M, Pitkänen T, Mäkinen R, Pursiainen A, Santo Domingo JW, Salonen H, Elk M, Keinänen-Toivola MM.

J Appl Microbiol. 2018 Feb;124(2):611-624. doi: 10.1111/jam.13662.


Microbial activity influences electrical conductivity of biofilm anode.

Dhar BR, Sim J, Ryu H, Ren H, Santo Domingo JW, Chae J, Lee HS.

Water Res. 2017 Dec 15;127:230-238. doi: 10.1016/j.watres.2017.10.028. Epub 2017 Oct 13.


Potential for gulls to transport bacteria from human waste sites to beaches.

Alm EW, Daniels-Witt QR, Learman DR, Ryu H, Jordan DW, Gehring TM, Santo Domingo J.

Sci Total Environ. 2018 Feb 15;615:123-130. doi: 10.1016/j.scitotenv.2017.09.232. Epub 2017 Sep 28.


Genome-Enabled Insights into the Ecophysiology of the Comammox Bacterium "Candidatus Nitrospira nitrosa".

Camejo PY, Santo Domingo J, McMahon KD, Noguera DR.

mSystems. 2017 Sep 12;2(5). pii: e00059-17. doi: 10.1128/mSystems.00059-17. eCollection 2017 Sep-Oct.


Antibiotics induce mitonuclear protein imbalance but fail to inhibit respiration and nutrient activation in pancreatic β-cells.

Santo-Domingo J, Chareyron I, Broenimann C, Lassueur S, Wiederkehr A.

Exp Cell Res. 2017 Aug 15;357(2):170-180. doi: 10.1016/j.yexcr.2017.05.013. Epub 2017 May 17.


Pilot plant demonstration of stable and efficient high rate biological nutrient removal with low dissolved oxygen conditions.

Keene NA, Reusser SR, Scarborough MJ, Grooms AL, Seib M, Santo Domingo J, Noguera DR.

Water Res. 2017 Sep 15;121:72-85. doi: 10.1016/j.watres.2017.05.029. Epub 2017 May 13.


Corrigendum: Advances in pancreatic islet monolayer culture on glass surfaces enable super-resolution microscopy and insights into beta cell ciliogenesis and proliferation.

Phelps EA, Cianciaruso C, Santo-Domingo J, Pasquier M, Galliverti G, Piemonti L, Berishvili E, Burri O, Wiederkehr A, Hubbell JA, Baekkeskov S.

Sci Rep. 2017 May 9;7:46801. doi: 10.1038/srep46801. No abstract available.


A novel ATP-synthase-independent mechanism coupling mitochondrial activation to exocytosis in insulin-secreting cells.

De Marchi U, Hermant A, Thevenet J, Ratinaud Y, Santo-Domingo J, Barron D, Wiederkehr A.

J Cell Sci. 2017 Jun 1;130(11):1929-1939. doi: 10.1242/jcs.200741. Epub 2017 Apr 12.


Advances in pancreatic islet monolayer culture on glass surfaces enable super-resolution microscopy and insights into beta cell ciliogenesis and proliferation.

Phelps EA, Cianciaruso C, Santo-Domingo J, Pasquier M, Galliverti G, Piemonti L, Berishvili E, Burri O, Wiederkehr A, Hubbell JA, Baekkeskov S.

Sci Rep. 2017 Apr 12;7:45961. doi: 10.1038/srep45961. Erratum in: Sci Rep. 2017 May 09;7:46801.


Corexit 9500 Enhances Oil Biodegradation and Changes Active Bacterial Community Structure of Oil-Enriched Microcosms.

Techtmann SM, Zhuang M, Campo P, Holder E, Elk M, Hazen TC, Conmy R, Santo Domingo JW.

Appl Environ Microbiol. 2017 May 1;83(10). pii: e03462-16. doi: 10.1128/AEM.03462-16. Print 2017 May 15.


L-OPA1 regulates mitoflash biogenesis independently from membrane fusion.

Rosselin M, Santo-Domingo J, Bermont F, Giacomello M, Demaurex N.

EMBO Rep. 2017 Mar;18(3):451-463. doi: 10.15252/embr.201642931. Epub 2017 Feb 7.


Coordinated activation of mitochondrial respiration and exocytosis mediated by PKC signaling in pancreatic β cells.

Santo-Domingo J, Chareyron I, Dayon L, Núñez Galindo A, Cominetti O, Pilar Giner Giménez M, De Marchi U, Canto C, Kussmann M, Wiederkehr A.

FASEB J. 2017 Mar;31(3):1028-1045. doi: 10.1096/fj.201600837R. Epub 2016 Dec 7.


The Roles of Biofilm Conductivity and Donor Substrate Kinetics in a Mixed-Culture Biofilm Anode.

Lee HS, Dhar BR, An J, Rittmann BE, Ryu H, Santo Domingo JW, Ren H, Chae J.

Environ Sci Technol. 2016 Dec 6;50(23):12799-12807. Epub 2016 Nov 15.


Candidatus Accumulibacter phosphatis clades enriched under cyclic anaerobic and microaerobic conditions simultaneously use different electron acceptors.

Camejo PY, Owen BR, Martirano J, Ma J, Kapoor V, Santo Domingo J, McMahon KD, Noguera DR.

Water Res. 2016 Oct 1;102:125-137. doi: 10.1016/j.watres.2016.06.033. Epub 2016 Jun 16. Erratum in: Water Res. 2017 Dec 15;127:258.


Inhibitory effect of cyanide on wastewater nitrification determined using SOUR and RNA-based gene-specific assays.

Kapoor V, Elk M, Li X, Santo Domingo JW.

Lett Appl Microbiol. 2016 Aug;63(2):155-61. doi: 10.1111/lam.12603.


Changes in bacterial composition of biofilm in a metropolitan drinking water distribution system.

Revetta RP, Gomez-Alvarez V, Gerke TL, Santo Domingo JW, Ashbolt NJ.

J Appl Microbiol. 2016 Jul;121(1):294-305. doi: 10.1111/jam.13150.


Diversity of ribosomal 16S DNA- and RNA-based bacterial community in an office building drinking water system.

Inkinen J, Jayaprakash B, Santo Domingo JW, Keinänen-Toivola MM, Ryu H, Pitkänen T.

J Appl Microbiol. 2016 Jun;120(6):1723-38. doi: 10.1111/jam.13144. Epub 2016 Apr 25.


Biofilms on Hospital Shower Hoses: Characterization and Implications for Nosocomial Infections.

Soto-Giron MJ, Rodriguez-R LM, Luo C, Elk M, Ryu H, Hoelle J, Santo Domingo JW, Konstantinidis KT.

Appl Environ Microbiol. 2016 Apr 18;82(9):2872-2883. doi: 10.1128/AEM.03529-15. Print 2016 May.


Effects of Cr(III) and Cr(VI) on nitrification inhibition as determined by SOUR, function-specific gene expression and 16S rRNA sequence analysis of wastewater nitrifying enrichments.

Kapoor V, Elk M, Li X, Impellitteri CA, Santo Domingo JW.

Chemosphere. 2016 Mar;147:361-7. doi: 10.1016/j.chemosphere.2015.12.119. Epub 2016 Jan 15.


Modulation of the matrix redox signaling by mitochondrial Ca(2.).

Santo-Domingo J, Wiederkehr A, De Marchi U.

World J Biol Chem. 2015 Nov 26;6(4):310-23. doi: 10.4331/wjbc.v6.i4.310. Review.


Use of functional gene expression and respirometry to study wastewater nitrification activity after exposure to low doses of copper.

Kapoor V, Li X, Chandran K, Impellitteri CA, Santo Domingo JW.

Environ Sci Pollut Res Int. 2016 Apr;23(7):6443-50. doi: 10.1007/s11356-015-5843-2. Epub 2015 Dec 2.


Metabolic and genomic analysis elucidates strain-level variation in Microbacterium spp. isolated from chromate contaminated sediment.

Henson MW, Santo Domingo JW, Kourtev PS, Jensen RV, Dunn JA, Learman DR.

PeerJ. 2015 Nov 10;3:e1395. doi: 10.7717/peerj.1395. eCollection 2015.


Impact of Heavy Metals on Transcriptional and Physiological Activity of Nitrifying Bacteria.

Kapoor V, Li X, Elk M, Chandran K, Impellitteri CA, Santo Domingo JW.

Environ Sci Technol. 2015 Nov 17;49(22):13454-62. doi: 10.1021/acs.est.5b02748. Epub 2015 Nov 5.


New perspectives on microbial community distortion after whole-genome amplification.

Probst AJ, Weinmaier T, DeSantis TZ, Santo Domingo JW, Ashbolt N.

PLoS One. 2015 May 26;10(5):e0124158. doi: 10.1371/journal.pone.0124158. eCollection 2015.


Bacterial composition in a metropolitan drinking water distribution system utilizing different source waters.

Gomez-Alvarez V, Humrighouse BW, Revetta RP, Santo Domingo JW.

J Water Health. 2015 Mar;13(1):140-51. doi: 10.2166/wh.2014.057.


Distribution of human-specific bacteroidales and fecal indicator bacteria in an urban watershed impacted by sewage pollution, determined using RNA- and DNA-based quantitative PCR assays.

Kapoor V, Pitkänen T, Ryu H, Elk M, Wendell D, Santo Domingo JW.

Appl Environ Microbiol. 2015 Jan;81(1):91-9. doi: 10.1128/AEM.02446-14. Epub 2014 Oct 17.


Novel microbiological and spatial statistical methods to improve strength of epidemiological evidence in a community-wide waterborne outbreak.

Jalava K, Rintala H, Ollgren J, Maunula L, Gomez-Alvarez V, Revez J, Palander M, Antikainen J, Kauppinen A, Räsänen P, Siponen S, Nyholm O, Kyyhkynen A, Hakkarainen S, Merentie J, Pärnänen M, Loginov R, Ryu H, Kuusi M, Siitonen A, Miettinen I, Santo Domingo JW, Hänninen ML, Pitkänen T.

PLoS One. 2014 Aug 22;9(8):e104713. doi: 10.1371/journal.pone.0104713. eCollection 2014.


Microbial community response to chlorine conversion in a chloraminated drinking water distribution system.

Wang H, Proctor CR, Edwards MA, Pryor M, Santo Domingo JW, Ryu H, Camper AK, Olson A, Pruden A.

Environ Sci Technol. 2014 Sep 16;48(18):10624-33. doi: 10.1021/es502646d. Epub 2014 Aug 22.


Impact of drinking water conditions and copper materials on downstream biofilm microbial communities and Legionella pneumophila colonization.

Lu J, Buse HY, Gomez-Alvarez V, Struewing I, Santo Domingo J, Ashbolt NJ.

J Appl Microbiol. 2014 Sep;117(3):905-18. doi: 10.1111/jam.12578. Epub 2014 Jul 7.


NCLX protein, but not LETM1, mediates mitochondrial Ca2+ extrusion, thereby limiting Ca2+-induced NAD(P)H production and modulating matrix redox state.

De Marchi U, Santo-Domingo J, Castelbou C, Sekler I, Wiederkehr A, Demaurex N.

J Biol Chem. 2014 Jul 18;289(29):20377-85. doi: 10.1074/jbc.M113.540898. Epub 2014 Jun 4.


Genome sequencing reveals the environmental origin of enterococci and potential biomarkers for water quality monitoring.

Weigand MR, Ashbolt NJ, Konstantinidis KT, Santo Domingo JW.

Environ Sci Technol. 2014 Apr 1;48(7):3707-14. doi: 10.1021/es4054835. Epub 2014 Mar 12.


Intestinal microbiota and species diversity of Campylobacter and Helicobacter spp. in migrating shorebirds in Delaware Bay.

Ryu H, Grond K, Verheijen B, Elk M, Buehler DM, Santo Domingo JW.

Appl Environ Microbiol. 2014 Mar;80(6):1838-47. doi: 10.1128/AEM.03793-13. Epub 2014 Jan 10.


Syntrophic interactions between H2-scavenging and anode-respiring bacteria can improve current density in microbial electrochemical cells.

Gao Y, Ryu H, Santo Domingo JW, Lee HS.

Bioresour Technol. 2014 Feb;153:245-53. doi: 10.1016/j.biortech.2013.11.077. Epub 2013 Dec 3.


Detection of fecal bacteria and source tracking identifiers in environmental waters using rRNA-based RT-qPCR and rDNA-based qPCR assays.

Pitkänen T, Ryu H, Elk M, Hokajärvi AM, Siponen S, Vepsäläinen A, Räsänen P, Santo Domingo JW.

Environ Sci Technol. 2013;47(23):13611-20. doi: 10.1021/es403489b. Epub 2013 Nov 14.


The impact of silver nanoparticles on the composting of municipal solid waste.

Gitipour A, El Badawy A, Arambewela M, Miller B, Scheckel K, Elk M, Ryu H, Gomez-Alvarez V, Santo Domingo J, Thiel S, Tolaymat T.

Environ Sci Technol. 2013 Dec 17;47(24):14385-93. doi: 10.1021/es402510a. Epub 2013 Nov 26.


Correlative assessment of fecal indicators using human mitochondrial DNA as a direct marker.

Kapoor V, Smith C, Santo Domingo JW, Lu T, Wendell D.

Environ Sci Technol. 2013 Sep 17;47(18):10485-93. doi: 10.1021/es4020458. Epub 2013 Aug 26.


Multi-laboratory evaluations of the performance of Catellicoccus marimammalium PCR assays developed to target gull fecal sources.

Sinigalliano CD, Ervin JS, Van De Werfhorst LC, Badgley BD, Ballesté E, Bartkowiak J, Boehm AB, Byappanahalli M, Goodwin KD, Gourmelon M, Griffith J, Holden PA, Jay J, Layton B, Lee C, Lee J, Meijer WG, Noble R, Raith M, Ryu H, Sadowsky MJ, Schriewer A, Wang D, Wanless D, Whitman R, Wuertz S, Santo Domingo JW.

Water Res. 2013 Nov 15;47(18):6883-96. doi: 10.1016/j.watres.2013.02.059. Epub 2013 Jul 5.


Evaluation of the repeatability and reproducibility of a suite of qPCR-based microbial source tracking methods.

Ebentier DL, Hanley KT, Cao Y, Badgley BD, Boehm AB, Ervin JS, Goodwin KD, Gourmelon M, Griffith JF, Holden PA, Kelty CA, Lozach S, McGee C, Peed LA, Raith M, Ryu H, Sadowsky MJ, Scott EA, Santo Domingo J, Schriewer A, Sinigalliano CD, Shanks OC, Van De Werfhorst LC, Wang D, Wuertz S, Jay JA.

Water Res. 2013 Nov 15;47(18):6839-48. doi: 10.1016/j.watres.2013.01.060. Epub 2013 Jul 5.


Functional microbial diversity explains groundwater chemistry in a pristine aquifer.

Flynn TM, Sanford RA, Ryu H, Bethke CM, Levine AD, Ashbolt NJ, Santo Domingo JW.

BMC Microbiol. 2013 Jun 24;13:146. doi: 10.1186/1471-2180-13-146.


Establishment and early succession of bacterial communities in monochloramine-treated drinking water biofilms.

Revetta RP, Gomez-Alvarez V, Gerke TL, Curioso C, Santo Domingo JW, Ashbolt NJ.

FEMS Microbiol Ecol. 2013 Dec;86(3):404-14. doi: 10.1111/1574-6941.12170. Epub 2013 Jul 17.


OPA1 promotes pH flashes that spread between contiguous mitochondria without matrix protein exchange.

Santo-Domingo J, Giacomello M, Poburko D, Scorrano L, Demaurex N.

EMBO J. 2013 Jul 3;32(13):1927-40. doi: 10.1038/emboj.2013.124. Epub 2013 May 28.


Determining hot spots of fecal contamination in a tropical watershed by combining land-use information and meteorological data with source-specific assays.

Jent JR, Ryu H, Toledo-Hernández C, Santo Domingo JW, Yeghiazarian L.

Environ Sci Technol. 2013 Jun 4;47(11):5794-802. doi: 10.1021/es304066z. Epub 2013 May 23.


Molecular detection of Campylobacter spp. and fecal indicator bacteria during the northern migration of sandhill cranes (Grus canadensis) at the central Platte River.

Lu J, Ryu H, Vogel J, Santo Domingo J, Ashbolt NJ.

Appl Environ Microbiol. 2013 Jun;79(12):3762-9. doi: 10.1128/AEM.03990-12. Epub 2013 Apr 12.


Draft Genome Sequence of Catellicoccus marimammalium, a Novel Species Commonly Found in Gull Feces.

Weigand MR, Ryu H, Bozcek L, Konstantinidis KT, Santo Domingo JW.

Genome Announc. 2013 Jan;1(1). pii: e00019-12. doi: 10.1128/genomeA.00019-12. Epub 2013 Feb 7.


Tracking the primary sources of fecal pollution in a tropical watershed in a one-year study.

Toledo-Hernandez C, Ryu H, Gonzalez-Nieves J, Huertas E, Toranzos GA, Santo Domingo JW.

Appl Environ Microbiol. 2013 Mar;79(5):1689-96. doi: 10.1128/AEM.03070-12. Epub 2013 Jan 4.


Molecular diversity of Bacteroidales in fecal and environmental samples and swine-associated subpopulations.

Lamendella R, Li KC, Oerther D, Santo Domingo JW.

Appl Environ Microbiol. 2013 Feb;79(3):816-24. doi: 10.1128/AEM.02535-12. Epub 2012 Nov 16.


Development of quantitative PCR assays targeting the 16S rRNA genes of Enterococcus spp. and their application to the identification of enterococcus species in environmental samples.

Ryu H, Henson M, Elk M, Toledo-Hernandez C, Griffith J, Blackwood D, Noble R, Gourmelon M, Glassmeyer S, Santo Domingo JW.

Appl Environ Microbiol. 2013 Jan;79(1):196-204. doi: 10.1128/AEM.02802-12. Epub 2012 Oct 19.


Dramatic improvements in beach water quality following gull removal.

Converse RR, Kinzelman JL, Sams EA, Hudgens E, Dufour AP, Ryu H, Santo-Domingo JW, Kelty CA, Shanks OC, Siefring SD, Haugland RA, Wade TJ.

Environ Sci Technol. 2012 Sep 18;46(18):10206-13. doi: 10.1021/es302306b. Epub 2012 Sep 5.


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