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Genomic diversity of prevalent Staphylococcus epidermidis multidrug-resistant strains isolated from a Children's Hospital in México City in an eight-years survey.

Cabrera-Contreras R, Santamaría RI, Bustos P, Martínez-Flores I, Meléndez-Herrada E, Morelos-Ramírez R, Barbosa-Amezcua M, González-Covarrubias V, Silva-Herzog E, Soberón X, González V.

PeerJ. 2019 Nov 20;7:e8068. doi: 10.7717/peerj.8068. eCollection 2019.


Phylogenomic Rhizobium Species Are Structured by a Continuum of Diversity and Genomic Clusters.

González V, Santamaría RI, Bustos P, Pérez-Carrascal OM, Vinuesa P, Juárez S, Martínez-Flores I, Cevallos MÁ, Brom S, Martínez-Romero E, Romero D.

Front Microbiol. 2019 Apr 30;10:910. doi: 10.3389/fmicb.2019.00910. eCollection 2019.


The XRE-DUF397 Protein Pair, Scr1 and Scr2, Acts as a Strong Positive Regulator of Antibiotic Production in Streptomyces.

Santamaría RI, Sevillano L, Martín J, Genilloud O, González I, Díaz M.

Front Microbiol. 2018 Nov 16;9:2791. doi: 10.3389/fmicb.2018.02791. eCollection 2018.


Uncovering production of specialized metabolites by Streptomyces argillaceus: Activation of cryptic biosynthesis gene clusters using nutritional and genetic approaches.

Becerril A, Álvarez S, Braña AF, Rico S, Díaz M, Santamaría RI, Salas JA, Méndez C.

PLoS One. 2018 May 24;13(5):e0198145. doi: 10.1371/journal.pone.0198145. eCollection 2018.


Preparation of a robust immobilized biocatalyst of β-1,4-endoxylanase by surface coating with polymers for production of xylooligosaccharides from different xylan sources.

Romero-Fernández M, Moreno-Perez S, Martins de Oliveira S, Santamaría RI, Guisan JM, Rocha-Martin J.

N Biotechnol. 2018 Sep 25;44:50-58. doi: 10.1016/j.nbt.2018.04.007. Epub 2018 Apr 25.


The Orphan Response Regulator Aor1 Is a New Relevant Piece in the Complex Puzzle of Streptomyces coelicolor Antibiotic Regulatory Network.

Antoraz S, Rico S, Rodríguez H, Sevillano L, Alzate JF, Santamaría RI, Díaz M.

Front Microbiol. 2017 Dec 12;8:2444. doi: 10.3389/fmicb.2017.02444. eCollection 2017.


Draft Genome Sequence of Leuconostoc citreum CW28 Isolated from Pozol, a Pre-Hispanic Fermented Corn Beverage.

Olvera C, Santamaría RI, Bustos P, Vallejo C, Montor JJ, Wacher C, Lopez Munguia A.

Genome Announc. 2017 Nov 30;5(48). pii: e01283-17. doi: 10.1128/genomeA.01283-17.


Development of an antibiotic marker-free platform for heterologous protein production in Streptomyces.

Sevillano L, Díaz M, Santamaría RI.

Microb Cell Fact. 2017 Sep 26;16(1):164. doi: 10.1186/s12934-017-0781-y.


Complete Genome Sequences of Eight Rhizobium Symbionts Associated with Common Bean (Phaseolus vulgaris).

Santamaría RI, Bustos P, Pérez-Carrascal OM, Miranda-Sánchez F, Vinuesa P, Martínez-Flores I, Juárez S, Lozano L, Martínez-Romero E, Cevallos MÁ, Romero D, Dávila G, Ormeño-Orrillo E, González V.

Genome Announc. 2017 Jul 27;5(30). pii: e00645-17. doi: 10.1128/genomeA.00645-17.


Genomic and physiological characterization of a laboratory-isolated Acinetobacter schindleri ACE strain that quickly and efficiently catabolizes acetate.

Sigala JC, Suárez BP, Lara AR, Borgne SL, Bustos P, Santamaría RI, González V, Martinez A.

Microbiology. 2017 Jul;163(7):1052-1064. doi: 10.1099/mic.0.000488. Epub 2017 Jul 21.


Complete Genome Sequences of Three Rhizobium gallicum Symbionts Associated with Common Bean (Phaseolus vulgaris).

Bustos P, Santamaría RI, Pérez-Carrascal OM, Acosta JL, Lozano L, Juárez S, Martínez-Flores I, Martínez-Romero E, Cevallos MÁ, Romero D, Dávila G, Vinuesa P, Miranda F, Ormeño E, González V.

Genome Announc. 2017 Mar 16;5(11). pii: e00030-17. doi: 10.1128/genomeA.00030-17.


New approaches to achieve high level enzyme production in Streptomyces lividans.

Sevillano L, Vijgenboom E, van Wezel GP, Díaz M, Santamaría RI.

Microb Cell Fact. 2016 Feb 4;15:28. doi: 10.1186/s12934-016-0425-7.


Toward a new focus in antibiotic and drug discovery from the Streptomyces arsenal.

Antoraz S, Santamaría RI, Díaz M, Sanz D, Rodríguez H.

Front Microbiol. 2015 May 13;6:461. doi: 10.3389/fmicb.2015.00461. eCollection 2015. Review.


The two kinases, AbrC1 and AbrC2, of the atypical two-component system AbrC are needed to regulate antibiotic production and differentiation in Streptomyces coelicolor.

Rodríguez H, Rico S, Yepes A, Franco-Echevarría E, Antoraz S, Santamaría RI, Díaz M.

Front Microbiol. 2015 May 12;6:450. doi: 10.3389/fmicb.2015.00450. eCollection 2015.


Regulation of the AbrA1/A2 two-component system in Streptomyces coelicolor and the potential of its deletion strain as a heterologous host for antibiotic production.

Rico S, Yepes A, Rodríguez H, Santamaría J, Antoraz S, Krause EM, Díaz M, Santamaría RI.

PLoS One. 2014 Oct 10;9(10):e109844. doi: 10.1371/journal.pone.0109844. eCollection 2014.


Genomic basis of symbiovar mimosae in Rhizobium etli.

Rogel MA, Bustos P, Santamaría RI, González V, Romero D, Cevallos MÁ, Lozano L, Castro-Mondragón J, Martínez-Romero J, Ormeño-Orrillo E, Martínez-Romero E.

BMC Genomics. 2014 Jul 8;15:575. doi: 10.1186/1471-2164-15-575.


Deciphering the regulon of Streptomyces coelicolor AbrC3, a positive response regulator of antibiotic production.

Rico S, Santamaría RI, Yepes A, Rodríguez H, Laing E, Bucca G, Smith CP, Díaz M.

Appl Environ Microbiol. 2014 Apr;80(8):2417-28. doi: 10.1128/AEM.03378-13. Epub 2014 Feb 7.


Two-component systems in Streptomyces: key regulators of antibiotic complex pathways.

Rodríguez H, Rico S, Díaz M, Santamaría RI.

Microb Cell Fact. 2013 Dec 19;12:127. doi: 10.1186/1475-2859-12-127. Review.


Narrow-host-range bacteriophages that infect Rhizobium etli associate with distinct genomic types.

Santamaría RI, Bustos P, Sepúlveda-Robles O, Lozano L, Rodríguez C, Fernández JL, Juárez S, Kameyama L, Guarneros G, Dávila G, González V.

Appl Environ Microbiol. 2014 Jan;80(2):446-54. doi: 10.1128/AEM.02256-13. Epub 2013 Nov 1.


Stable expression plasmids for Streptomyces based on a toxin-antitoxin system.

Sevillano L, Díaz M, Santamaría RI.

Microb Cell Fact. 2013 Apr 25;12:39. doi: 10.1186/1475-2859-12-39.


High level of antibiotic production in a double polyphosphate kinase and phosphate-binding protein mutant of Streptomyces lividans.

Díaz M, Sevillano L, Rico S, Lombo F, Braña AF, Salas JA, Mendez C, Santamaría RI.

FEMS Microbiol Lett. 2013 May;342(2):123-9. doi: 10.1111/1574-6968.12098. Epub 2013 Feb 28.


Transfer of quinolone resistance gene qnrA1 to Escherichia coli through a 50 kb conjugative plasmid resulting from the splitting of a 300 kb plasmid.

Garza-Ramos U, Barrios H, Hernandez-Vargas MJ, Rojas-Moreno T, Reyna-Flores F, Tinoco P, Othon V, Poirel L, Nordmann P, Cattoir V, Ruiz-Palacios G, Fernandez JL, Santamaria RI, Bustos P, Castro N, Silva-Sanchez J.

J Antimicrob Chemother. 2012 Jul;67(7):1627-34. doi: 10.1093/jac/dks123. Epub 2012 Apr 18.


Identification of the first functional toxin-antitoxin system in Streptomyces.

Sevillano L, Díaz M, Yamaguchi Y, Inouye M, Santamaría RI.

PLoS One. 2012;7(3):e32977. doi: 10.1371/journal.pone.0032977. Epub 2012 Mar 14.


Genomic lineages of Rhizobium etli revealed by the extent of nucleotide polymorphisms and low recombination.

Acosta JL, Eguiarte LE, Santamaría RI, Bustos P, Vinuesa P, Martínez-Romero E, Dávila G, González V.

BMC Evol Biol. 2011 Oct 17;11:305. doi: 10.1186/1471-2148-11-305.


The conjugative plasmid of a bean-nodulating Sinorhizobium fredii strain is assembled from sequences of two Rhizobium plasmids and the chromosome of a Sinorhizobium strain.

Cervantes L, Bustos P, Girard L, Santamaría RI, Dávila G, Vinuesa P, Romero D, Brom S.

BMC Microbiol. 2011 Jun 25;11:149. doi: 10.1186/1471-2180-11-149.


Novel two-component systems implied in antibiotic production in Streptomyces coelicolor.

Yepes A, Rico S, Rodríguez-García A, Santamaría RI, Díaz M.

PLoS One. 2011;6(5):e19980. doi: 10.1371/journal.pone.0019980. Epub 2011 May 20.


Myxococcus xanthus induces actinorhodin overproduction and aerial mycelium formation by Streptomyces coelicolor.

Pérez J, Muñoz-Dorado J, Braña AF, Shimkets LJ, Sevillano L, Santamaría RI.

Microb Biotechnol. 2011 Mar;4(2):175-83. doi: 10.1111/j.1751-7915.2010.00208.x. Epub 2010 Sep 27.


Post-translational processing of modular xylanases from Streptomyces is dependent on the carbohydrate-binding module.

Díaz M, Fernández-Ábalos JM, Soliveri J, Copa-Patiño JL, Santamaría RI.

J Ind Microbiol Biotechnol. 2011 Sep;38(9):1419-26. doi: 10.1007/s10295-010-0927-y. Epub 2010 Dec 23.


Robust reporter system based on chalcone synthase rppA gene from Saccharopolyspora erythraea.

Magdevska V, Gaber R, Goranovič D, Kuščer E, Boakes S, Durán Alonso MB, Santamaría RI, Raspor P, Leadlay PF, Fujs S, Petković H.

J Microbiol Methods. 2010 Nov;83(2):111-9. doi: 10.1016/j.mimet.2010.08.001. Epub 2010 Aug 13.


Evolutionary dynamics of insertion sequences in relation to the evolutionary histories of the chromosome and symbiotic plasmid genes of Rhizobium etli populations.

Lozano L, Hernández-González I, Bustos P, Santamaría RI, Souza V, Young JP, Dávila G, González V.

Appl Environ Microbiol. 2010 Oct;76(19):6504-13. doi: 10.1128/AEM.01001-10. Epub 2010 Jul 30.


Conserved symbiotic plasmid DNA sequences in the multireplicon pangenomic structure of Rhizobium etli.

González V, Acosta JL, Santamaría RI, Bustos P, Fernández JL, Hernández González IL, Díaz R, Flores M, Palacios R, Mora J, Dávila G.

Appl Environ Microbiol. 2010 Mar;76(5):1604-14. doi: 10.1128/AEM.02039-09. Epub 2010 Jan 4.


Expression of the pstS gene of Streptomyces lividans is regulated by the carbon source and is partially independent of the PhoP regulator.

Esteban A, Díaz M, Yepes A, Santamaría RI.

BMC Microbiol. 2008 Nov 19;8:201. doi: 10.1186/1471-2180-8-201.


Promicromonospora kroppenstedtii sp. nov., isolated from sandy soil.

Alonso-Vega P, Santamaría RI, Martínez-Molina E, Trujillo ME.

Int J Syst Evol Microbiol. 2008 Jun;58(Pt 6):1476-81. doi: 10.1099/ijs.0.65458-0.


Rapid evolutionary change of common bean (Phaseolus vulgaris L) plastome, and the genomic diversification of legume chloroplasts.

Guo X, Castillo-Ramírez S, González V, Bustos P, Fernández-Vázquez JL, Santamaría RI, Arellano J, Cevallos MA, Dávila G.

BMC Genomics. 2007 Jul 10;8:228.


The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons.

González V, Santamaría RI, Bustos P, Hernández-González I, Medrano-Soto A, Moreno-Hagelsieb G, Janga SC, Ramírez MA, Jiménez-Jacinto V, Collado-Vides J, Dávila G.

Proc Natl Acad Sci U S A. 2006 Mar 7;103(10):3834-9. Epub 2006 Feb 27.


The genome project of Taenia solium.

Aguilar-Díaz H, Bobes RJ, Carrero JC, Camacho-Carranza R, Cervantes C, Cevallos MA, Dávila G, Rodríguez-Dorantes M, Escobedo G, Fernández JL, Fragoso G, Gaytán P, Garciarubio A, González VM, González L, José MV, Jiménez L, Laclette JP, Landa A, Larralde C, Morales-Montor J, Morett E, Ostoa-Saloma P, Sciutto E, Santamaría RI, Soberón X, de la Torre P, Valdés V, Yánez J.

Parasitol Int. 2006;55 Suppl:S127-30. Epub 2005 Dec 6. Review.


Identification of the sequences involved in the glucose-repressed transcription of the Streptomyces halstedii JM8 xysA promoter.

Rodríguez S, Santamaría RI, Fernández-Abalos JM, Díaz M.

Gene. 2005 May 23;351:1-9. Epub 2005 Apr 22.


Single mutations of residues outside the active center of the xylanase Xys1 Delta from Streptomyces halstedii JM8 affect its activity.

Díaz M, Rodriguez S, Fernández-Abalos JM, De Las Rivas J, Ruiz-Arribas A, Shnyrov VL, Santamaría RI.

FEMS Microbiol Lett. 2004 Nov 15;240(2):237-43.


Streptomyces lividans and Brevibacterium lactofermentum as heterologous hosts for the production of X22 xylanase from Aspergillus nidulans.

Díaz M, Adham SA, Ramón D, Gil JA, Santamaría RI.

Appl Microbiol Biotechnol. 2004 Sep;65(4):401-6. Epub 2004 May 27.


SCP1, a 356,023 bp linear plasmid adapted to the ecology and developmental biology of its host, Streptomyces coelicolor A3(2).

Bentley SD, Brown S, Murphy LD, Harris DE, Quail MA, Parkhill J, Barrell BG, McCormick JR, Santamaria RI, Losick R, Yamasaki M, Kinashi H, Chen CW, Chandra G, Jakimowicz D, Kieser HM, Kieser T, Chater KF.

Mol Microbiol. 2004 Mar;51(6):1615-28.


Posttranslational processing of the xylanase Xys1L from Streptomyces halstedii JM8 is carried out by secreted serine proteases.

Fernández-Abalos JM, Reviejo V, Díaz M, Rodríguez S, Leal F, Santamaría RI.

Microbiology. 2003 Jul;149(Pt 7):1623-1632. doi: 10.1099/mic.0.26113-0.


Improved vectors for transcriptional/translational signal screening in corynebacteria using the melC operon from Streptomyces glaucescens as reporter.

Adham SA, Rodríguez S, Ramos A, Santamaría RI, Gil JA.

Arch Microbiol. 2003 Jul;180(1):53-9. Epub 2003 Jun 7.


Enzyme-mediated solvent extraction of carotenoids from marigold flower (Tagetes erecta).

Barzana E, Rubio D, Santamaria RI, Garcia-Correa O, Garcia F, Ridaura Sanz VE, López-Munguía A.

J Agric Food Chem. 2002 Jul 31;50(16):4491-6.


Radamycin, a novel thiopeptide produced by streptomyces sp. RSP9. I. Taxonomy, fermentation, isolation and biological activities.

González Holgado G, Castro Rodríguez J, Cañedo Hernández LM, Díaz M, Fernández-Abalos JM, Trujillano I, Santamaría RI.

J Antibiot (Tokyo). 2002 Apr;55(4):383-90.


Morphological and physiological changes in Streptomyces lividans induced by different yeasts.

Santamaría RI, Leal F, Díaz M, Fernández-Abalos JM.

Arch Microbiol. 2002 Mar;177(3):259-66. Epub 2002 Jan 23.


Selective enzyme-mediated extraction of capsaicinoids and caratenoids from chili guajillo puya (Capsicum annum L.) using ethanol as solvent.

Santamaría RI, Reyes-Duarte MD, Bárzana E, Fernando D, Gama FM, Mota M, López-Munguía A.

J Agric Food Chem. 2000 Jul;48(7):3063-7.


Introducing transglycosylation activity in a liquefying alpha-amylase.

Saab-Rincón G, del-Río G, Santamaría RI, López-Munguía A, Soberón X.

FEBS Lett. 1999 Jun 18;453(1-2):100-6.


Alcoholysis reactions from starch with alpha-amylases.

Santamaría RI, Del Río G, Saab G, Rodríguez ME, Soberón X, López-Manguía A.

FEBS Lett. 1999 Jun 11;452(3):346-50.

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