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Structure of the Ty3/Gypsy retrotransposon capsid and the evolution of retroviruses.

Dodonova SO, Prinz S, Bilanchone V, Sandmeyer S, Briggs JAG.

Proc Natl Acad Sci U S A. 2019 May 14;116(20):10048-10057. doi: 10.1073/pnas.1900931116. Epub 2019 Apr 29.


Functional genomics for the oleaginous yeast Yarrowia lipolytica.

Patterson K, Yu J, Landberg J, Chang I, Shavarebi F, Bilanchone V, Sandmeyer S.

Metab Eng. 2018 Jul;48:184-196. doi: 10.1016/j.ymben.2018.05.008. Epub 2018 May 22.


Bioengineering triacetic acid lactone production in Yarrowia lipolytica for pogostone synthesis.

Yu J, Landberg J, Shavarebi F, Bilanchone V, Okerlund A, Wanninayake U, Zhao L, Kraus G, Sandmeyer S.

Biotechnol Bioeng. 2018 Sep;115(9):2383-2388. doi: 10.1002/bit.26733. Epub 2018 Jun 6.


Control of yeast retrotransposons mediated through nucleoporin evolution.

Rowley PA, Patterson K, Sandmeyer SB, Sawyer SL.

PLoS Genet. 2018 Apr 25;14(4):e1007325. doi: 10.1371/journal.pgen.1007325. eCollection 2018 Apr.


Sequence Assembly of Yarrowia lipolytica Strain W29/CLIB89 Shows Transposable Element Diversity.

Magnan C, Yu J, Chang I, Jahn E, Kanomata Y, Wu J, Zeller M, Oakes M, Baldi P, Sandmeyer S.

PLoS One. 2016 Sep 7;11(9):e0162363. doi: 10.1371/journal.pone.0162363. eCollection 2016.


Ty3 Retrotransposon Hijacks Mating Yeast RNA Processing Bodies to Infect New Genomes.

Bilanchone V, Clemens K, Kaake R, Dawson AR, Matheos D, Nagashima K, Sitlani P, Patterson K, Chang I, Huang L, Sandmeyer S.

PLoS Genet. 2015 Sep 30;11(9):e1005528. doi: 10.1371/journal.pgen.1005528. eCollection 2015.


Ty3, a Position-specific Retrotransposon in Budding Yeast.

Sandmeyer S, Patterson K, Bilanchone V.

Microbiol Spectr. 2015 Apr;3(2):MDNA3-0057-2014. doi: 10.1128/microbiolspec.MDNA3-0057-2014. Review.


MedEdPORTAL: a report on oral health resources for health professions educators.

Chickmagalur NS, Allareddy V, Sandmeyer S, Valachovic RW, Candler CS, Saleh M, Cahill E, Karimbux NY.

J Dent Educ. 2013 Sep;77(9):1122-8.


Directed DNA shuffling of retrovirus and retrotransposon integrase protein domains.

Qi X, Vargas E, Larsen L, Knapp W, Hatfield GW, Lathrop R, Sandmeyer S.

PLoS One. 2013 May 17;8(5):e63957. doi: 10.1371/journal.pone.0063957. Print 2013.


Membrane stress caused by octanoic acid in Saccharomyces cerevisiae.

Liu P, Chernyshov A, Najdi T, Fu Y, Dickerson J, Sandmeyer S, Jarboe L.

Appl Microbiol Biotechnol. 2013 Apr;97(7):3239-51. doi: 10.1007/s00253-013-4773-5. Epub 2013 Feb 26.


Development and characterization of a vector set with regulated promoters for systematic metabolic engineering in Saccharomyces cerevisiae.

Shen MW, Fang F, Sandmeyer S, Da Silva NA.

Yeast. 2012 Dec;29(12):495-503. doi: 10.1002/yea.2930. Epub 2012 Nov 19.


Sequence requirements for localization and packaging of Ty3 retroelement RNA.

Clemens K, Bilanchone V, Beliakova-Bethell N, Larsen LS, Nguyen K, Sandmeyer S.

Virus Res. 2013 Feb;171(2):319-31. doi: 10.1016/j.virusres.2012.10.008. Epub 2012 Oct 13.


In vitro targeting of strand transfer by the Ty3 retroelement integrase.

Qi X, Sandmeyer S.

J Biol Chem. 2012 May 25;287(22):18589-95. doi: 10.1074/jbc.M111.326025. Epub 2012 Apr 4.


Retrotransposon profiling of RNA polymerase III initiation sites.

Qi X, Daily K, Nguyen K, Wang H, Mayhew D, Rigor P, Forouzan S, Johnston M, Mitra RD, Baldi P, Sandmeyer S.

Genome Res. 2012 Apr;22(4):681-92. doi: 10.1101/gr.131219.111. Epub 2012 Jan 27.


The TY3 Gag3 spacer controls intracellular condensation and uncoating.

Clemens K, Larsen L, Zhang M, Kuznetsov Y, Bilanchone V, Randall A, Harned A, Dasilva R, Nagashima K, McPherson A, Baldi P, Sandmeyer S.

J Virol. 2011 Apr;85(7):3055-66. doi: 10.1128/JVI.01055-10. Epub 2011 Jan 26.


Function of a retrotransposon nucleocapsid protein.

Sandmeyer SB, Clemens KA.

RNA Biol. 2010 Nov-Dec;7(6):642-54. Epub 2010 Nov 1. Review.


A vector set for systematic metabolic engineering in Saccharomyces cerevisiae.

Fang F, Salmon K, Shen MW, Aeling KA, Ito E, Irwin B, Tran UP, Hatfield GW, Da Silva NA, Sandmeyer S.

Yeast. 2011 Feb;28(2):123-36. doi: 10.1002/yea.1824. Epub 2010 Oct 8.


Two-hybrid analysis of Ty3 capsid subdomain interactions.

Zhang M, Larsen LS, Irwin B, Bilanchone V, Sandmeyer S.

Mob DNA. 2010 May 5;1(1):14. doi: 10.1186/1759-8753-1-14.


Ty3 nuclear entry is initiated by viruslike particle docking on GLFG nucleoporins.

Beliakova-Bethell N, Terry LJ, Bilanchone V, DaSilva R, Nagashima K, Wente SR, Sandmeyer S.

J Virol. 2009 Nov;83(22):11914-25. doi: 10.1128/JVI.01192-09. Epub 2009 Sep 16.


Ty3 nucleocapsid controls localization of particle assembly.

Larsen LS, Beliakova-Bethell N, Bilanchone V, Zhang M, Lamsa A, Dasilva R, Hatfield GW, Nagashima K, Sandmeyer S.

J Virol. 2008 Mar;82(5):2501-14. Epub 2007 Dec 19.


TY3 GAG3 protein forms ordered particles in Escherichia coli.

Larsen LS, Kuznetsov Y, McPherson A, Hatfield GW, Sandmeyer S.

Virology. 2008 Jan 20;370(2):223-7. Epub 2007 Oct 26.


Ty3 capsid mutations reveal early and late functions of the amino-terminal domain.

Larsen LS, Zhang M, Beliakova-Bethell N, Bilanchone V, Lamsa A, Nagashima K, Najdi R, Kosaka K, Kovacevic V, Cheng J, Baldi P, Hatfield GW, Sandmeyer S.

J Virol. 2007 Jul;81(13):6957-72. Epub 2007 Apr 18.


Virus-like particles of the Ty3 retrotransposon assemble in association with P-body components.

Beliakova-Bethell N, Beckham C, Giddings TH Jr, Winey M, Parker R, Sandmeyer S.

RNA. 2006 Jan;12(1):94-101.


Investigation by atomic force microscopy of the structure of Ty3 retrotransposon particles.

Kuznetsov YG, Zhang M, Menees TM, McPherson A, Sandmeyer S.

J Virol. 2005 Jul;79(13):8032-45.


Retroviruses and yeast retrotransposons use overlapping sets of host genes.

Irwin B, Aye M, Baldi P, Beliakova-Bethell N, Cheng H, Dou Y, Liou W, Sandmeyer S.

Genome Res. 2005 May;15(5):641-54. Epub 2005 Apr 18.


Host factors that affect Ty3 retrotransposition in Saccharomyces cerevisiae.

Aye M, Irwin B, Beliakova-Bethell N, Chen E, Garrus J, Sandmeyer S.

Genetics. 2004 Nov;168(3):1159-76.


Integration by design.

Sandmeyer S.

Proc Natl Acad Sci U S A. 2003 May 13;100(10):5586-8. Epub 2003 May 5. Review. No abstract available.


Tailoring the genome: the power of genetic approaches.

Nagy A, Perrimon N, Sandmeyer S, Plasterk R.

Nat Genet. 2003 Mar;33 Suppl:276-84. Review.


Mutational analysis of the transcription factor IIIB-DNA target of Ty3 retroelement integration.

Yieh L, Hatzis H, Kassavetis G, Sandmeyer SB.

J Biol Chem. 2002 Jul 19;277(29):25920-8. Epub 2002 May 6.


Ty3 integrase is required for initiation of reverse transcription.

Nymark-McMahon MH, Beliakova-Bethell NS, Darlix JL, Le Grice SF, Sandmeyer SB.

J Virol. 2002 Mar;76(6):2804-16.


A truncation mutant of the 95-kilodalton subunit of transcription factor IIIC reveals asymmetry in Ty3 integration.

Aye M, Dildine SL, Claypool JA, Jourdain S, Sandmeyer SB.

Mol Cell Biol. 2001 Nov;21(22):7839-51.


Integrase mediates nuclear localization of Ty3.

Lin SS, Nymark-McMahon MH, Yieh L, Sandmeyer SB.

Mol Cell Biol. 2001 Nov;21(22):7826-38.


Ten-kilodalton domain in Ty3 Gag3-Pol3p between PR and RT is dispensable for Ty3 transposition.

Claypool JA, Malik HS, Eickbush TH, Sandmeyer SB.

J Virol. 2001 Feb;75(3):1557-60.


Analysis of yeast's ORF upstream regions by parallel processing, microarrays, and computational methods.

Hampson S, Baldi P, Kibler D, Sandmeyer SB.

Proc Int Conf Intell Syst Mol Biol. 2000;8:190-201. No abstract available.


Combinatorial motif analysis and hypothesis generation on a genomic scale.

Hu YJ, Sandmeyer S, McLaughlin C, Kibler D.

Bioinformatics. 2000 Mar;16(3):222-32.


Cdc53/cullin and the essential Hrt1 RING-H2 subunit of SCF define a ubiquitin ligase module that activates the E2 enzyme Cdc34.

Seol JH, Feldman RM, Zachariae W, Shevchenko A, Correll CC, Lyapina S, Chi Y, Galova M, Claypool J, Sandmeyer S, Nasmyth K, Deshaies RJ, Shevchenko A, Deshaies RJ.

Genes Dev. 1999 Jun 15;13(12):1614-26.


Targeting transposition: at home in the genome.

Sandmeyer S.

Genome Res. 1998 May;8(5):416-8. Review. No abstract available.


A chimeric Ty3/Moloney murine leukemia virus integrase protein is active in vivo.

Dildine SL, Respess J, Jolly D, Sandmeyer SB.

J Virol. 1998 May;72(5):4297-307.


Small heat shock protein suppression of Vpr-induced cytoskeletal defects in budding yeast.

Gu J, Emerman M, Sandmeyer S.

Mol Cell Biol. 1997 Jul;17(7):4033-42.


RNA polymerase III interferes with Ty3 integration.

Connolly CM, Sandmeyer SB.

FEBS Lett. 1997 Apr 1;405(3):305-11.


Mutations in the Ty3 major homology region affect multiple steps in Ty3 retrotransposition.

Orlinsky KJ, Gu J, Hoyt M, Sandmeyer S, Menees TM.

J Virol. 1996 Jun;70(6):3440-8.


Morphogenesis at the retrotransposon-retrovirus interface: gypsy and copia families in yeast and Drosophila.

Sandmeyer SB, Menees TM.

Curr Top Microbiol Immunol. 1996;214:261-96. Review. No abstract available.


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