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Items: 1 to 50 of 98

1.

Assembly and Analysis of the Genome Sequence of the Yeast Brettanomyces naardenensis CBS 7540.

Tiukova IA, Jiang H, Dainat J, Hoeppner MP, Lantz H, Piskur J, Sandgren M, Nielsen J, Gu Z, Passoth V.

Microorganisms. 2019 Oct 26;7(11). pii: E489. doi: 10.3390/microorganisms7110489.

2.

The dissociation mechanism of processive cellulases.

Vermaas JV, Kont R, Beckham GT, Crowley MF, Gudmundsson M, Sandgren M, Ståhlberg J, Väljamäe P, Knott BC.

Proc Natl Acad Sci U S A. 2019 Nov 12;116(46):23061-23067. doi: 10.1073/pnas.1913398116. Epub 2019 Oct 30.

PMID:
31666327
3.

Genome-scale model of Rhodotorula toruloides metabolism.

Tiukova IA, Prigent S, Nielsen J, Sandgren M, Kerkhoven EJ.

Biotechnol Bioeng. 2019 Dec;116(12):3396-3408. doi: 10.1002/bit.27162. Epub 2019 Sep 22.

PMID:
31502665
4.

Comparison of three seemingly similar lytic polysaccharide monooxygenases from Neurospora crassa suggests different roles in plant biomass degradation.

Petrović DM, Várnai A, Dimarogona M, Mathiesen G, Sandgren M, Westereng B, Eijsink VGH.

J Biol Chem. 2019 Oct 11;294(41):15068-15081. doi: 10.1074/jbc.RA119.008196. Epub 2019 Aug 20.

PMID:
31431506
5.

Coupled chemistry kinetics demonstrate the utility of functionalized Sup35 amyloid nanofibrils in biocatalytic cascades.

Schmuck B, Gudmundsson M, Härd T, Sandgren M.

J Biol Chem. 2019 Oct 11;294(41):14966-14977. doi: 10.1074/jbc.RA119.008455. Epub 2019 Aug 15.

6.

Manganese and iron deficiency in Southern Ocean Phaeocystis antarctica populations revealed through taxon-specific protein indicators.

Wu M, McCain JSP, Rowland E, Middag R, Sandgren M, Allen AE, Bertrand EM.

Nat Commun. 2019 Aug 8;10(1):3582. doi: 10.1038/s41467-019-11426-z.

7.

FT-NIR: a tool for rapid intracellular lipid quantification in oleaginous yeasts.

Chmielarz M, Sampels S, Blomqvist J, Brandenburg J, Wende F, Sandgren M, Passoth V.

Biotechnol Biofuels. 2019 Jun 29;12:169. doi: 10.1186/s13068-019-1513-9. eCollection 2019.

8.

Biochemical profiling, prediction of total lipid content and fatty acid profile in oleaginous yeasts by FTIR spectroscopy.

Shapaval V, Brandenburg J, Blomqvist J, Tafintseva V, Passoth V, Sandgren M, Kohler A.

Biotechnol Biofuels. 2019 Jun 6;12:140. doi: 10.1186/s13068-019-1481-0. eCollection 2019.

9.

Proteome analysis of xylose metabolism in Rhodotorula toruloides during lipid production.

Tiukova IA, Brandenburg J, Blomqvist J, Sampels S, Mikkelsen N, Skaugen M, Arntzen MØ, Nielsen J, Sandgren M, Kerkhoven EJ.

Biotechnol Biofuels. 2019 Jun 4;12:137. doi: 10.1186/s13068-019-1478-8. eCollection 2019.

10.

Genetic variation of biomass recalcitrance in a natural Salix viminalis (L.) population.

Ohlsson JA, Hallingbäck HR, Jebrane M, Harman-Ware AE, Shollenberger T, Decker SR, Sandgren M, Rönnberg-Wästljung AC.

Biotechnol Biofuels. 2019 Jun 3;12:135. doi: 10.1186/s13068-019-1479-7. eCollection 2019.

11.

Medical Cannabis: Effects on Opioid and Benzodiazepine Requirements for Pain Control.

O'Connell M, Sandgren M, Frantzen L, Bower E, Erickson B.

Ann Pharmacother. 2019 Nov;53(11):1081-1086. doi: 10.1177/1060028019854221. Epub 2019 May 25.

PMID:
31129977
12.

Biofuel production from straw hydrolysates: current achievements and perspectives.

Passoth V, Sandgren M.

Appl Microbiol Biotechnol. 2019 Jul;103(13):5105-5116. doi: 10.1007/s00253-019-09863-3. Epub 2019 May 12. Review.

13.

Kinetic and molecular dynamics study of inhibition and transglycosylation in Hypocrea jecorina family 3 β-glucosidases.

Geronimo I, Ntarima P, Piens K, Gudmundsson M, Hansson H, Sandgren M, Payne CM.

J Biol Chem. 2019 Mar 1;294(9):3169-3180. doi: 10.1074/jbc.RA118.007027. Epub 2019 Jan 2.

PMID:
30602567
14.

Structural studies of a glycoside hydrolase family 3 β-glucosidase from the model fungus Neurospora crassa.

Karkehabadi S, Hansson H, Mikkelsen NE, Kim S, Kaper T, Sandgren M, Gudmundsson M.

Acta Crystallogr F Struct Biol Commun. 2018 Dec 1;74(Pt 12):787-796. doi: 10.1107/S2053230X18015662. Epub 2018 Nov 26.

15.

Evolution and functional characterization of pectate lyase PEL12, a member of a highly expanded Clonostachys rosea polysaccharide lyase 1 family.

Atanasova L, Dubey M, Grujić M, Gudmundsson M, Lorenz C, Sandgren M, Kubicek CP, Jensen DF, Karlsson M.

BMC Microbiol. 2018 Nov 7;18(1):178. doi: 10.1186/s12866-018-1310-9.

16.

Effect of lignin fractions isolated from different biomass sources on cellulose oxidation by fungal lytic polysaccharide monooxygenases.

Muraleedharan MN, Zouraris D, Karantonis A, Topakas E, Sandgren M, Rova U, Christakopoulos P, Karnaouri A.

Biotechnol Biofuels. 2018 Oct 28;11:296. doi: 10.1186/s13068-018-1294-6. eCollection 2018.

17.

Oleaginous yeast as a component in fish feed.

Blomqvist J, Pickova J, Tilami SK, Sampels S, Mikkelsen N, Brandenburg J, Sandgren M, Passoth V.

Sci Rep. 2018 Oct 29;8(1):15945. doi: 10.1038/s41598-018-34232-x.

18.

Protofibrillar and Fibrillar Amyloid-β Binding Proteins in Cerebrospinal Fluid.

Rahman MM, Westermark GT, Zetterberg H, Härd T, Sandgren M.

J Alzheimers Dis. 2018;66(3):1053-1064. doi: 10.3233/JAD-180596.

PMID:
30372682
19.

Enantioselective Binding of Propranolol and Analogues Thereof to Cellobiohydrolase Cel7A.

Hamark C, Pendrill R, Landström J, Dotson Fagerström A, Sandgren M, Ståhlberg J, Widmalm G.

Chemistry. 2018 Dec 5;24(68):17975-17985. doi: 10.1002/chem.201803104. Epub 2018 Nov 15.

PMID:
30255965
20.

Hydrolysis and Transglycosylation Transition States of Glycoside Hydrolase Family 3 β-Glucosidases Differ in Charge and Puckering Conformation.

Geronimo I, Payne CM, Sandgren M.

J Phys Chem B. 2018 Oct 18;122(41):9452-9459. doi: 10.1021/acs.jpcb.8b07118. Epub 2018 Oct 8.

PMID:
30247906
21.

Production of Ready-To-Use Functionalized Sup35 Nanofibrils Secreted by Komagataella pastoris.

Schmuck B, Gudmundsson M, Blomqvist J, Hansson H, Härd T, Sandgren M.

ACS Nano. 2018 Sep 25;12(9):9363-9371. doi: 10.1021/acsnano.8b04450. Epub 2018 Sep 12.

PMID:
30207696
22.

Side-by-side biochemical comparison of two lytic polysaccharide monooxygenases from the white-rot fungus Heterobasidion irregulare on their activity against crystalline cellulose and glucomannan.

Liu B, Krishnaswamyreddy S, Muraleedharan MN, Olson Å, Broberg A, Ståhlberg J, Sandgren M.

PLoS One. 2018 Sep 5;13(9):e0203430. doi: 10.1371/journal.pone.0203430. eCollection 2018.

23.

A model comparison algorithm for increased forecast accuracy of dengue fever incidence in Singapore and the auxiliary role of total precipitation information.

Koh YM, Spindler R, Sandgren M, Jiang J.

Int J Environ Health Res. 2018 Oct;28(5):535-552. doi: 10.1080/09603123.2018.1496234. Epub 2018 Jul 17.

PMID:
30016117
24.

Bioethanol and lipid production from the enzymatic hydrolysate of wheat straw after furfural extraction.

Brandenburg J, Poppele I, Blomqvist J, Puke M, Pickova J, Sandgren M, Rapoport A, Vedernikovs N, Passoth V.

Appl Microbiol Biotechnol. 2018 Jul;102(14):6269-6277. doi: 10.1007/s00253-018-9081-7. Epub 2018 May 26.

25.

The kinetics of TEM1 antibiotic degrading enzymes that are displayed on Ure2 protein nanofibrils in a flow reactor.

Schmuck B, Sandgren M, Härd T.

PLoS One. 2018 Apr 23;13(4):e0196250. doi: 10.1371/journal.pone.0196250. eCollection 2018.

26.

Structural and molecular dynamics studies of a C1-oxidizing lytic polysaccharide monooxygenase from Heterobasidion irregulare reveal amino acids important for substrate recognition.

Liu B, Kognole AA, Wu M, Westereng B, Crowley MF, Kim S, Dimarogona M, Payne CM, Sandgren M.

FEBS J. 2018 Jun;285(12):2225-2242. doi: 10.1111/febs.14472. Epub 2018 Apr 24.

27.

Correlation of structure, function and protein dynamics in GH7 cellobiohydrolases from Trichoderma atroviride, T. reesei and T. harzianum.

Borisova AS, Eneyskaya EV, Jana S, Badino SF, Kari J, Amore A, Karlsson M, Hansson H, Sandgren M, Himmel ME, Westh P, Payne CM, Kulminskaya AA, Ståhlberg J.

Biotechnol Biofuels. 2018 Jan 13;11:5. doi: 10.1186/s13068-017-1006-7. eCollection 2018.

28.

The role of catalytic residue pKa on the hydrolysis/transglycosylation partition in family 3 β-glucosidases.

Geronimo I, Payne CM, Sandgren M.

Org Biomol Chem. 2018 Jan 3;16(2):316-324. doi: 10.1039/c7ob02558k.

PMID:
29251740
29.

Biochemical studies of two lytic polysaccharide monooxygenases from the white-rot fungus Heterobasidion irregulare and their roles in lignocellulose degradation.

Liu B, Olson Å, Wu M, Broberg A, Sandgren M.

PLoS One. 2017 Dec 11;12(12):e0189479. doi: 10.1371/journal.pone.0189479. eCollection 2017.

30.

Oxygen Activation by Cu LPMOs in Recalcitrant Carbohydrate Polysaccharide Conversion to Monomer Sugars.

Meier KK, Jones SM, Kaper T, Hansson H, Koetsier MJ, Karkehabadi S, Solomon EI, Sandgren M, Kelemen B.

Chem Rev. 2018 Mar 14;118(5):2593-2635. doi: 10.1021/acs.chemrev.7b00421. Epub 2017 Nov 20. Review.

31.

Greenhouse gas performance of biochemical biodiesel production from straw: soil organic carbon changes and time-dependent climate impact.

Karlsson H, Ahlgren S, Sandgren M, Passoth V, Wallberg O, Hansson PA.

Biotechnol Biofuels. 2017 Sep 13;10:217. doi: 10.1186/s13068-017-0907-9. eCollection 2017.

32.

High-resolution structure of a lytic polysaccharide monooxygenase from Hypocrea jecorina reveals a predicted linker as an integral part of the catalytic domain.

Hansson H, Karkehabadi S, Mikkelsen N, Douglas NR, Kim S, Lam A, Kaper T, Kelemen B, Meier KK, Jones SM, Solomon EI, Sandgren M.

J Biol Chem. 2017 Nov 17;292(46):19099-19109. doi: 10.1074/jbc.M117.799767. Epub 2017 Sep 12.

33.

Improving the thermal stability of cellobiohydrolase Cel7A from Hypocrea jecorina by directed evolution.

Goedegebuur F, Dankmeyer L, Gualfetti P, Karkehabadi S, Hansson H, Jana S, Huynh V, Kelemen BR, Kruithof P, Larenas EA, Teunissen PJM, Ståhlberg J, Payne CM, Mitchinson C, Sandgren M.

J Biol Chem. 2017 Oct 20;292(42):17418-17430. doi: 10.1074/jbc.M117.803270. Epub 2017 Aug 31.

34.

Identification of proteins that specifically recognize and bind protofibrillar aggregates of amyloid-β.

Wahlberg E, Rahman MM, Lindberg H, Gunneriusson E, Schmuck B, Lendel C, Sandgren M, Löfblom J, Ståhl S, Härd T.

Sci Rep. 2017 Jul 20;7(1):5949. doi: 10.1038/s41598-017-06377-8.

35.

Recombinant expression of thermostable processive MtEG5 endoglucanase and its synergism with MtLPMO from Myceliophthora thermophila during the hydrolysis of lignocellulosic substrates.

Karnaouri A, Muraleedharan MN, Dimarogona M, Topakas E, Rova U, Sandgren M, Christakopoulos P.

Biotechnol Biofuels. 2017 May 15;10:126. doi: 10.1186/s13068-017-0813-1. eCollection 2017.

36.

A fine-tuned composition of protein nanofibrils yields an upgraded functionality of displayed antibody binding domains.

Schmuck B, Sandgren M, Härd T.

Biotechnol J. 2017 Jun;12(6). doi: 10.1002/biot.201600672. Epub 2017 May 8.

PMID:
28371185
37.

Microplate-Based Detection of Lytic Polysaccharide Monooxygenase Activity by Fluorescence-Labeling of Insoluble Oxidized Products.

Vuong TV, Liu B, Sandgren M, Master ER.

Biomacromolecules. 2017 Feb 13;18(2):610-616. doi: 10.1021/acs.biomac.6b01790. Epub 2017 Jan 26.

PMID:
28125213
38.

A systems analysis of biodiesel production from wheat straw using oleaginous yeast: process design, mass and energy balances.

Karlsson H, Ahlgren S, Sandgren M, Passoth V, Wallberg O, Hansson PA.

Biotechnol Biofuels. 2016 Oct 25;9:229. eCollection 2016.

39.

Psychological variables underlying political orientations in an old and a new democracy: A comparative study between Sweden and Latvia.

Dimdins G, Sandgren M, Montgomery H.

Scand J Psychol. 2016 Oct;57(5):437-45. doi: 10.1111/sjop.12314. Epub 2016 Aug 2.

PMID:
27481632
40.

Structural and functional studies of the glycoside hydrolase family 3 β-glucosidase Cel3A from the moderately thermophilic fungus Rasamsonia emersonii.

Gudmundsson M, Hansson H, Karkehabadi S, Larsson A, Stals I, Kim S, Sunux S, Fujdala M, Larenas E, Kaper T, Sandgren M.

Acta Crystallogr D Struct Biol. 2016 Jul;72(Pt 7):860-70. doi: 10.1107/S2059798316008482. Epub 2016 Jun 23.

41.

Interactions of a fungal lytic polysaccharide monooxygenase with β-glucan substrates and cellobiose dehydrogenase.

Courtade G, Wimmer R, Røhr ÅK, Preims M, Felice AK, Dimarogona M, Vaaje-Kolstad G, Sørlie M, Sandgren M, Ludwig R, Eijsink VG, Aachmann FL.

Proc Natl Acad Sci U S A. 2016 May 24;113(21):5922-7. doi: 10.1073/pnas.1602566113. Epub 2016 May 5.

42.

Backbone and side-chain (1)H, (13)C, and (15)N chemical shift assignments for the apo-form of the lytic polysaccharide monooxygenase NcLPMO9C.

Courtade G, Wimmer R, Dimarogona M, Sandgren M, Eijsink VG, Aachmann FL.

Biomol NMR Assign. 2016 Oct;10(2):277-80. doi: 10.1007/s12104-016-9683-x. Epub 2016 May 4.

PMID:
27147444
43.

Lipid production from hemicellulose with Lipomyces starkeyi in a pH regulated fed-batch cultivation.

Brandenburg J, Blomqvist J, Pickova J, Bonturi N, Sandgren M, Passoth V.

Yeast. 2016 Aug;33(8):451-62. doi: 10.1002/yea.3160. Epub 2016 Apr 19.

44.

Functionalized silk assembled from a recombinant spider silk fusion protein (Z-4RepCT) produced in the methylotrophic yeast Pichia pastoris.

Jansson R, Lau CH, Ishida T, Ramström M, Sandgren M, Hedhammar M.

Biotechnol J. 2016 May;11(5):687-99. doi: 10.1002/biot.201500412. Epub 2016 Mar 4.

PMID:
26814048
45.

Sequencing, biochemical characterization, crystal structure and molecular dynamics of cellobiohydrolase Cel7A from Geotrichum candidum 3C.

Borisova AS, Eneyskaya EV, Bobrov KS, Jana S, Logachev A, Polev DE, Lapidus AL, Ibatullin FM, Saleem U, Sandgren M, Payne CM, Kulminskaya AA, Ståhlberg J.

FEBS J. 2015 Dec;282(23):4515-37. doi: 10.1111/febs.13509. Epub 2015 Oct 8.

46.

Structural and functional studies of a Fusarium oxysporum cutinase with polyethylene terephthalate modification potential.

Dimarogona M, Nikolaivits E, Kanelli M, Christakopoulos P, Sandgren M, Topakas E.

Biochim Biophys Acta. 2015 Nov;1850(11):2308-17. doi: 10.1016/j.bbagen.2015.08.009. Epub 2015 Aug 17.

PMID:
26291558
47.

Structural and Functional Characterization of a Lytic Polysaccharide Monooxygenase with Broad Substrate Specificity.

Borisova AS, Isaksen T, Dimarogona M, Kognole AA, Mathiesen G, Várnai A, Røhr ÅK, Payne CM, Sørlie M, Sandgren M, Eijsink VG.

J Biol Chem. 2015 Sep 18;290(38):22955-69. doi: 10.1074/jbc.M115.660183. Epub 2015 Jul 15.

48.

The method of integrated kinetics and its applicability to the exo-glycosidase-catalyzed hydrolysis of p-nitrophenyl glycosides.

Borisova AS, Reddy SK, Ivanen DR, Bobrov KS, Eneyskaya EV, Rychkov GN, Sandgren M, Stålbrand H, Sinnott ML, Kulminskaya AA, Shabalin KA.

Carbohydr Res. 2015 Aug 14;412:43-9. doi: 10.1016/j.carres.2015.03.021. Epub 2015 May 1.

PMID:
26005928
49.

Structural insights into the inhibition of cellobiohydrolase Cel7A by xylo-oligosaccharides.

Momeni MH, Ubhayasekera W, Sandgren M, Ståhlberg J, Hansson H.

FEBS J. 2015 Jun;282(11):2167-77. doi: 10.1111/febs.13265. Epub 2015 Apr 8.

50.

Fungal cellulases.

Payne CM, Knott BC, Mayes HB, Hansson H, Himmel ME, Sandgren M, Ståhlberg J, Beckham GT.

Chem Rev. 2015 Feb 11;115(3):1308-448. doi: 10.1021/cr500351c. Epub 2015 Jan 28. Review. No abstract available.

PMID:
25629559

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