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Items: 23

1.

breakpointR: an R/Bioconductor package to localize strand state changes in Strand-seq data.

Porubsky D, Sanders AD, Taudt A, Colomé-Tatché M, Lansdorp PM, Guryev V.

Bioinformatics. 2019 Aug 30. pii: btz681. doi: 10.1093/bioinformatics/btz681. [Epub ahead of print]

PMID:
31504176
2.

Multi-platform discovery of haplotype-resolved structural variation in human genomes.

Chaisson MJP, Sanders AD, Zhao X, Malhotra A, Porubsky D, Rausch T, Gardner EJ, Rodriguez OL, Guo L, Collins RL, Fan X, Wen J, Handsaker RE, Fairley S, Kronenberg ZN, Kong X, Hormozdiari F, Lee D, Wenger AM, Hastie AR, Antaki D, Anantharaman T, Audano PA, Brand H, Cantsilieris S, Cao H, Cerveira E, Chen C, Chen X, Chin CS, Chong Z, Chuang NT, Lambert CC, Church DM, Clarke L, Farrell A, Flores J, Galeev T, Gorkin DU, Gujral M, Guryev V, Heaton WH, Korlach J, Kumar S, Kwon JY, Lam ET, Lee JE, Lee J, Lee WP, Lee SP, Li S, Marks P, Viaud-Martinez K, Meiers S, Munson KM, Navarro FCP, Nelson BJ, Nodzak C, Noor A, Kyriazopoulou-Panagiotopoulou S, Pang AWC, Qiu Y, Rosanio G, Ryan M, Stütz A, Spierings DCJ, Ward A, Welch AE, Xiao M, Xu W, Zhang C, Zhu Q, Zheng-Bradley X, Lowy E, Yakneen S, McCarroll S, Jun G, Ding L, Koh CL, Ren B, Flicek P, Chen K, Gerstein MB, Kwok PY, Lansdorp PM, Marth GT, Sebat J, Shi X, Bashir A, Ye K, Devine SE, Talkowski ME, Mills RE, Marschall T, Korbel JO, Eichler EE, Lee C.

Nat Commun. 2019 Apr 16;10(1):1784. doi: 10.1038/s41467-018-08148-z.

3.

Genomic inversions and GOLGA core duplicons underlie disease instability at the 15q25 locus.

Maggiolini FAM, Cantsilieris S, D'Addabbo P, Manganelli M, Coe BP, Dumont BL, Sanders AD, Pang AWC, Vollger MR, Palumbo O, Palumbo P, Accadia M, Carella M, Eichler EE, Antonacci F.

PLoS Genet. 2019 Mar 27;15(3):e1008075. doi: 10.1371/journal.pgen.1008075. eCollection 2019 Mar.

4.

Strand-seq enables reliable separation of long reads by chromosome via expectation maximization.

Ghareghani M, Porubskỳ D, Sanders AD, Meiers S, Eichler EE, Korbel JO, Marschall T.

Bioinformatics. 2018 Jul 1;34(13):i115-i123. doi: 10.1093/bioinformatics/bty290.

5.

Dense and accurate whole-chromosome haplotyping of individual genomes.

Porubsky D, Garg S, Sanders AD, Korbel JO, Guryev V, Lansdorp PM, Marschall T.

Nat Commun. 2017 Nov 3;8(1):1293. doi: 10.1038/s41467-017-01389-4.

6.

Single-cell template strand sequencing by Strand-seq enables the characterization of individual homologs.

Sanders AD, Falconer E, Hills M, Spierings DCJ, Lansdorp PM.

Nat Protoc. 2017 Jun;12(6):1151-1176. doi: 10.1038/nprot.2017.029. Epub 2017 May 11.

PMID:
28492527
7.

Direct chromosome-length haplotyping by single-cell sequencing.

Porubský D, Sanders AD, van Wietmarschen N, Falconer E, Hills M, Spierings DC, Bevova MR, Guryev V, Lansdorp PM.

Genome Res. 2016 Nov;26(11):1565-1574. Epub 2016 Sep 19.

8.

Characterizing polymorphic inversions in human genomes by single-cell sequencing.

Sanders AD, Hills M, Porubský D, Guryev V, Falconer E, Lansdorp PM.

Genome Res. 2016 Nov;26(11):1575-1587. Epub 2016 Jul 29.

9.

The Prognostic Impact of CD163-Positive Macrophages in Follicular Lymphoma: A Study from the BC Cancer Agency and the Lymphoma Study Association.

Kridel R, Xerri L, Gelas-Dore B, Tan K, Feugier P, Vawda A, Canioni D, Farinha P, Boussetta S, Moccia AA, Brice P, Chavez EA, Kyle AH, Scott DW, Sanders AD, Fabiani B, Slack GW, Minchinton AI, Haioun C, Connors JM, Sehn LH, Steidl C, Gascoyne RD, Salles G.

Clin Cancer Res. 2015 Aug 1;21(15):3428-35. doi: 10.1158/1078-0432.CCR-14-3253. Epub 2015 Apr 13.

10.

A novel pathway for investigation of colorectal symptoms with colonoscopy or computed tomography colonography.

Sanders AD, Stevenson C, Pearson J, Burt M, McGeoch G, Hudson B, Eglinton TW.

N Z Med J. 2013 Sep 13;126(1382):45-57.

PMID:
24154769
11.

DNA template strand sequencing of single-cells maps genomic rearrangements at high resolution.

Falconer E, Hills M, Naumann U, Poon SS, Chavez EA, Sanders AD, Zhao Y, Hirst M, Lansdorp PM.

Nat Methods. 2012 Nov;9(11):1107-12. doi: 10.1038/nmeth.2206. Epub 2012 Oct 7.

12.

Adult spinal cord radial glia display a unique progenitor phenotype.

Petit A, Sanders AD, Kennedy TE, Tetzlaff W, Glattfelder KJ, Dalley RA, Puchalski RB, Jones AR, Roskams AJ.

PLoS One. 2011;6(9):e24538. doi: 10.1371/journal.pone.0024538. Epub 2011 Sep 12.

13.

Essential role for Ptpn11 in survival of hematopoietic stem and progenitor cells.

Chan G, Cheung LS, Yang W, Milyavsky M, Sanders AD, Gu S, Hong WX, Liu AX, Wang X, Barbara M, Sharma T, Gavin J, Kutok JL, Iscove NN, Shannon KM, Dick JE, Neel BG, Braun BS.

Blood. 2011 Apr 21;117(16):4253-61. doi: 10.1182/blood-2010-11-319517. Epub 2011 Feb 25.

14.

Chronic cough in infants and children: an update.

Holinger LD, Sanders AD.

Laryngoscope. 1991 Jun;101(6 Pt 1):596-605.

PMID:
2041439
15.

Reconstructive and rehabilitative aspects of head and neck cancer in the elderly.

Sanders AD, Blom ED, Singer MI, Hamaker RC.

Otolaryngol Clin North Am. 1990 Dec;23(6):1159-68. Review.

PMID:
2074987
16.

Chondrosarcoma of the sphenoethmoid complex.

Drucker C, Sanders AD, Bowes AK, Maddalozzo J.

Ear Nose Throat J. 1990 Sep;69(9):630-4.

PMID:
2245791
17.

Wharton's duct stones.

Sanders AD, Wolff AP.

Ear Nose Throat J. 1988 Sep;67(9):695-6. No abstract available.

PMID:
3240744
18.

Lingual abscess presenting as airway obstruction in the infant.

Sanders AD, Yeh S, Paige ML, Lum DT.

Otolaryngol Head Neck Surg. 1988 Sep;99(3):344-5. No abstract available.

PMID:
3141878
19.

Kirschner wire migration through the jugular foramen.

Sanders AD, Wolff AP, Ciric I, Mikhael M.

Ann Otol Rhinol Laryngol. 1988 Sep-Oct;97(5 Pt 1):559-60. No abstract available.

PMID:
3052228
20.

Holistic health: what is our response?

Sanders AD, Kettel LJ.

Ariz Med. 1979 Mar;36(3):203. No abstract available.

PMID:
435113
21.

The complementary uses of nuclear medicine and ultrasound in the kidney.

Sanders RC, Menon S, Sanders AD.

J Urol. 1978 Nov;120(5):521-7.

PMID:
712888
22.

The complementary use of B-scan ultrasound and radionuclide imaging techniques.

Sanders AD, Sanders RC.

J Nucl Med. 1977 Mar;18(3):205-20. Review. No abstract available.

23.

Poe v. Gerstein.

Sanders AD.

Hofstra Law Rev. 1976 Winter;4(2):531-47. No abstract available.

PMID:
11664627

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