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Items: 1 to 50 of 135

1.

Intussusceptive Vascular Remodeling Precedes Pathological Neovascularization.

Ali Z, Mukwaya A, Biesemeier A, Ntzouni M, Ramsköld D, Giatrellis S, Mammadzada P, Cao R, Lennikov A, Marass M, Gerri C, Hildesjö C, Taylor M, Deng Q, Peebo B, Del Peso L, Kvanta A, Sandberg R, Schraermeyer U, Andre H, Steffensen JF, Lagali N, Cao Y, Kele J, Jensen LD.

Arterioscler Thromb Vasc Biol. 2019 Jul;39(7):1402-1418. doi: 10.1161/ATVBAHA.118.312190. Epub 2019 May 9.

PMID:
31242036
2.

Disruption of the Extracellular Matrix Progressively Impairs Central Nervous System Vascular Maturation Downstream of β-Catenin Signaling.

Jensen LD, Hot B, Ramsköld D, Germano RFV, Yokota C, Giatrellis S, Lauschke VM, Hubmacher D, Li MX, Hupe M, Arnold TD, Sandberg R, Frisén J, Trusohamn M, Martowicz A, Wisniewska-Kruk J, Nyqvist D, Adams RH, Apte SS, Vanhollebeke B, Stenman JM, Kele J.

Arterioscler Thromb Vasc Biol. 2019 Jul;39(7):1432-1447. doi: 10.1161/ATVBAHA.119.312388. Epub 2019 May 9.

PMID:
31242033
3.

pH effects on the electrochemical reduction of CO(2) towards C2 products on stepped copper.

Liu X, Schlexer P, Xiao J, Ji Y, Wang L, Sandberg RB, Tang M, Brown KS, Peng H, Ringe S, Hahn C, Jaramillo TF, Nørskov JK, Chan K.

Nat Commun. 2019 Jan 3;10(1):32. doi: 10.1038/s41467-018-07970-9.

4.

Genomic encoding of transcriptional burst kinetics.

Larsson AJM, Johnsson P, Hagemann-Jensen M, Hartmanis L, Faridani OR, Reinius B, Segerstolpe Å, Rivera CM, Ren B, Sandberg R.

Nature. 2019 Jan;565(7738):251-254. doi: 10.1038/s41586-018-0836-1. Epub 2019 Jan 2.

PMID:
30602787
5.

Small-seq for single-cell small-RNA sequencing.

Hagemann-Jensen M, Abdullayev I, Sandberg R, Faridani OR.

Nat Protoc. 2018 Oct;13(10):2407-2424. doi: 10.1038/s41596-018-0049-y.

PMID:
30250291
6.

Three-dimensional X-ray diffraction imaging of dislocations in polycrystalline metals under tensile loading.

Cherukara MJ, Pokharel R, O'Leary TS, Baldwin JK, Maxey E, Cha W, Maser J, Harder RJ, Fensin SJ, Sandberg RL.

Nat Commun. 2018 Sep 17;9(1):3776. doi: 10.1038/s41467-018-06166-5.

7.

Exploring parasite heterogeneity using single-cell RNA-seq reveals a gene signature among sexual stage Plasmodium falciparum parasites.

Ngara M, Palmkvist M, Sagasser S, Hjelmqvist D, Björklund ÅK, Wahlgren M, Ankarklev J, Sandberg R.

Exp Cell Res. 2018 Oct 1;371(1):130-138. doi: 10.1016/j.yexcr.2018.08.003. Epub 2018 Aug 8.

8.

Reply to 'High prevalence of clonal monoallelic expression'.

Reinius B, Sandberg R.

Nat Genet. 2018 Sep;50(9):1199-1200. doi: 10.1038/s41588-018-0189-6. No abstract available.

PMID:
30082784
9.

Parental haplotype-specific single-cell transcriptomics reveal incomplete epigenetic reprogramming in human female germ cells.

Vértesy Á, Arindrarto W, Roost MS, Reinius B, Torrens-Juaneda V, Bialecka M, Moustakas I, Ariyurek Y, Kuijk E, Mei H, Sandberg R, van Oudenaarden A, Chuva de Sousa Lopes SM.

Nat Commun. 2018 May 14;9(1):1873. doi: 10.1038/s41467-018-04215-7.

10.

Computational correction of index switching in multiplexed sequencing libraries.

Larsson AJM, Stanley G, Sinha R, Weissman IL, Sandberg R.

Nat Methods. 2018 Apr 27;15(5):305-307. doi: 10.1038/nmeth.4666. No abstract available.

PMID:
29702636
11.

Identification of spatial expression trends in single-cell gene expression data.

Edsgärd D, Johnsson P, Sandberg R.

Nat Methods. 2018 May;15(5):339-342. doi: 10.1038/nmeth.4634. Epub 2018 Mar 19.

12.

Reading and editing the Pleurodeles waltl genome reveals novel features of tetrapod regeneration.

Elewa A, Wang H, Talavera-López C, Joven A, Brito G, Kumar A, Hameed LS, Penrad-Mobayed M, Yao Z, Zamani N, Abbas Y, Abdullayev I, Sandberg R, Grabherr M, Andersson B, Simon A.

Nat Commun. 2017 Dec 22;8(1):2286. doi: 10.1038/s41467-017-01964-9.

13.

Multimodal profiling of single-cell morphology, electrophysiology, and gene expression using Patch-seq.

Cadwell CR, Scala F, Li S, Livrizzi G, Shen S, Sandberg R, Jiang X, Tolias AS.

Nat Protoc. 2017 Dec;12(12):2531-2553. doi: 10.1038/nprot.2017.120. Epub 2017 Nov 16.

14.

Mouse Model of Alagille Syndrome and Mechanisms of Jagged1 Missense Mutations.

Andersson ER, Chivukula IV, Hankeova S, Sjöqvist M, Tsoi YL, Ramsköld D, Masek J, Elmansuri A, Hoogendoorn A, Vazquez E, Storvall H, Netušilová J, Huch M, Fischler B, Ellis E, Contreras A, Nemeth A, Chien KC, Clevers H, Sandberg R, Bryja V, Lendahl U.

Gastroenterology. 2018 Mar;154(4):1080-1095. doi: 10.1053/j.gastro.2017.11.002. Epub 2017 Nov 21.

15.

Time-resolved diffraction of shock-released SiO2 and diaplectic glass formation.

Gleason AE, Bolme CA, Lee HJ, Nagler B, Galtier E, Kraus RG, Sandberg R, Yang W, Langenhorst F, Mao WL.

Nat Commun. 2017 Nov 14;8(1):1481. doi: 10.1038/s41467-017-01791-y.

16.

Recurrent, bilateral quadriceps tendon rupture due to indirect trauma in a patient with sickle cell trait: A case report.

Sherman N, Sandberg R, Hardy J.

J Orthop Sci. 2017 Jul 20. pii: S0949-2658(17)30177-X. doi: 10.1016/j.jos.2017.06.016. [Epub ahead of print] No abstract available.

PMID:
28735881
17.

Q&A: using Patch-seq to profile single cells.

Cadwell CR, Sandberg R, Jiang X, Tolias AS.

BMC Biol. 2017 Jul 6;15(1):58. doi: 10.1186/s12915-017-0396-0.

18.

Cigar Box Arthroscopy: A Randomized Controlled Trial Validates Nonanatomic Simulation Training of Novice Arthroscopy Skills.

Sandberg RP, Sherman NC, Latt LD, Hardy JC.

Arthroscopy. 2017 Nov;33(11):2015-2023.e3. doi: 10.1016/j.arthro.2017.04.022. Epub 2017 Jul 1.

PMID:
28676200
19.

A TRPV1-to-secretagogin regulatory axis controls pancreatic β-cell survival by modulating protein turnover.

Malenczyk K, Girach F, Szodorai E, Storm P, Segerstolpe Å, Tortoriello G, Schnell R, Mulder J, Romanov RA, Borók E, Piscitelli F, Di Marzo V, Szabó G, Sandberg R, Kubicek S, Lubec G, Hökfelt T, Wagner L, Groop L, Harkany T.

EMBO J. 2017 Jul 14;36(14):2107-2125. doi: 10.15252/embj.201695347. Epub 2017 Jun 21.

20.

Single-cell transcriptomics uncovers distinct molecular signatures of stem cells in chronic myeloid leukemia.

Giustacchini A, Thongjuea S, Barkas N, Woll PS, Povinelli BJ, Booth CAG, Sopp P, Norfo R, Rodriguez-Meira A, Ashley N, Jamieson L, Vyas P, Anderson K, Segerstolpe Å, Qian H, Olsson-Strömberg U, Mustjoki S, Sandberg R, Jacobsen SEW, Mead AJ.

Nat Med. 2017 Jun;23(6):692-702. doi: 10.1038/nm.4336. Epub 2017 May 15.

PMID:
28504724
21.

Position- and Hippo signaling-dependent plasticity during lineage segregation in the early mouse embryo.

Posfai E, Petropoulos S, de Barros FRO, Schell JP, Jurisica I, Sandberg R, Lanner F, Rossant J.

Elife. 2017 Feb 22;6. pii: e22906. doi: 10.7554/eLife.22906.

22.

Single-Cell Analysis Reveals a Close Relationship between Differentiating Dopamine and Subthalamic Nucleus Neuronal Lineages.

Kee N, Volakakis N, Kirkeby A, Dahl L, Storvall H, Nolbrant S, Lahti L, Björklund ÅK, Gillberg L, Joodmardi E, Sandberg R, Parmar M, Perlmann T.

Cell Stem Cell. 2017 Jan 5;20(1):29-40. doi: 10.1016/j.stem.2016.10.003. Epub 2016 Oct 27.

23.

Single-cell sequencing of the small-RNA transcriptome.

Faridani OR, Abdullayev I, Hagemann-Jensen M, Schell JP, Lanner F, Sandberg R.

Nat Biotechnol. 2016 Dec;34(12):1264-1266. doi: 10.1038/nbt.3701. Epub 2016 Oct 31.

PMID:
27798564
24.

Initial seeding of the embryonic thymus by immune-restricted lympho-myeloid progenitors.

Luis TC, Luc S, Mizukami T, Boukarabila H, Thongjuea S, Woll PS, Azzoni E, Giustacchini A, Lutteropp M, Bouriez-Jones T, Vaidya H, Mead AJ, Atkinson D, Böiers C, Carrelha J, Macaulay IC, Patient R, Geissmann F, Nerlov C, Sandberg R, de Bruijn MFTR, Blackburn CC, Godin I, Jacobsen SEW.

Nat Immunol. 2016 Dec;17(12):1424-1435. doi: 10.1038/ni.3576. Epub 2016 Oct 3.

25.

Analysis of allelic expression patterns in clonal somatic cells by single-cell RNA-seq.

Reinius B, Mold JE, Ramsköld D, Deng Q, Johnsson P, Michaëlsson J, Frisén J, Sandberg R.

Nat Genet. 2016 Nov;48(11):1430-1435. doi: 10.1038/ng.3678. Epub 2016 Sep 26.

26.

Single-Cell Transcriptome Profiling of Human Pancreatic Islets in Health and Type 2 Diabetes.

Segerstolpe Å, Palasantza A, Eliasson P, Andersson EM, Andréasson AC, Sun X, Picelli S, Sabirsh A, Clausen M, Bjursell MK, Smith DM, Kasper M, Ämmälä C, Sandberg R.

Cell Metab. 2016 Oct 11;24(4):593-607. doi: 10.1016/j.cmet.2016.08.020. Epub 2016 Sep 22.

27.

Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos.

Petropoulos S, Edsgärd D, Reinius B, Deng Q, Panula SP, Codeluppi S, Reyes AP, Linnarsson S, Sandberg R, Lanner F.

Cell. 2016 Sep 22;167(1):285. doi: 10.1016/j.cell.2016.08.009. No abstract available.

28.

scphaser: haplotype inference using single-cell RNA-seq data.

Edsgärd D, Reinius B, Sandberg R.

Bioinformatics. 2016 Oct 1;32(19):3038-40. doi: 10.1093/bioinformatics/btw484. Epub 2016 Aug 6.

29.

Single-cell analyses of X Chromosome inactivation dynamics and pluripotency during differentiation.

Chen G, Schell JP, Benitez JA, Petropoulos S, Yilmaz M, Reinius B, Alekseenko Z, Shi L, Hedlund E, Lanner F, Sandberg R, Deng Q.

Genome Res. 2016 Oct;26(10):1342-1354. Epub 2016 Aug 2.

30.

Laser capture microscopy coupled with Smart-seq2 for precise spatial transcriptomic profiling.

Nichterwitz S, Chen G, Aguila Benitez J, Yilmaz M, Storvall H, Cao M, Sandberg R, Deng Q, Hedlund E.

Nat Commun. 2016 Jul 8;7:12139. doi: 10.1038/ncomms12139.

31.

In Vivo Effects of Mesenchymal Stromal Cells in Two Patients With Severe Acute Respiratory Distress Syndrome.

Simonson OE, Mougiakakos D, Heldring N, Bassi G, Johansson HJ, Dalén M, Jitschin R, Rodin S, Corbascio M, El Andaloussi S, Wiklander OP, Nordin JZ, Skog J, Romain C, Koestler T, Hellgren-Johansson L, Schiller P, Joachimsson PO, Hägglund H, Mattsson M, Lehtiö J, Faridani OR, Sandberg R, Korsgren O, Krampera M, Weiss DJ, Grinnemo KH, Le Blanc K.

Stem Cells Transl Med. 2016 Jun;5(6):845. doi: 10.5966/sctm.2015-0021erratum. No abstract available.

32.

Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos.

Petropoulos S, Edsgärd D, Reinius B, Deng Q, Panula SP, Codeluppi S, Plaza Reyes A, Linnarsson S, Sandberg R, Lanner F.

Cell. 2016 May 5;165(4):1012-26. doi: 10.1016/j.cell.2016.03.023. Epub 2016 Apr 7. Erratum in: Cell. 2016 Sep 22;167(1):285.

33.

The heterogeneity of human CD127(+) innate lymphoid cells revealed by single-cell RNA sequencing.

Björklund ÅK, Forkel M, Picelli S, Konya V, Theorell J, Friberg D, Sandberg R, Mjösberg J.

Nat Immunol. 2016 Apr;17(4):451-60. doi: 10.1038/ni.3368. Epub 2016 Feb 15.

PMID:
26878113
34.

Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq.

Cadwell CR, Palasantza A, Jiang X, Berens P, Deng Q, Yilmaz M, Reimer J, Shen S, Bethge M, Tolias KF, Sandberg R, Tolias AS.

Nat Biotechnol. 2016 Feb;34(2):199-203. doi: 10.1038/nbt.3445. Epub 2015 Dec 21.

35.

Efficient nonequilibrium method for binding free energy calculations in molecular dynamics simulations.

Sandberg RB, Banchelli M, Guardiani C, Menichetti S, Caminati G, Procacci P.

J Chem Theory Comput. 2015 Feb 10;11(2):423-35. doi: 10.1021/ct500964e.

PMID:
26580905
36.

Adult human and mouse ovaries lack DDX4-expressing functional oogonial stem cells.

Zhang H, Panula S, Petropoulos S, Edsgärd D, Busayavalasa K, Liu L, Li X, Risal S, Shen Y, Shao J, Liu M, Li S, Zhang D, Zhang X, Gerner RR, Sheikhi M, Damdimopoulou P, Sandberg R, Douagi I, Gustafsson JÅ, Liu L, Lanner F, Hovatta O, Liu K.

Nat Med. 2015 Oct;21(10):1116-8. doi: 10.1038/nm.3775. No abstract available.

PMID:
26444631
37.

Random monoallelic expression of autosomal genes: stochastic transcription and allele-level regulation.

Reinius B, Sandberg R.

Nat Rev Genet. 2015 Nov;16(11):653-64. doi: 10.1038/nrg3888. Epub 2015 Oct 7. Review.

PMID:
26442639
38.

Ultrafast visualization of crystallization and grain growth in shock-compressed SiO2.

Gleason AE, Bolme CA, Lee HJ, Nagler B, Galtier E, Milathianaki D, Hawreliak J, Kraus RG, Eggert JH, Fratanduono DE, Collins GW, Sandberg R, Yang W, Mao WL.

Nat Commun. 2015 Sep 4;6:8191. doi: 10.1038/ncomms9191.

39.

Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution.

Sahlén P, Abdullayev I, Ramsköld D, Matskova L, Rilakovic N, Lötstedt B, Albert TJ, Lundeberg J, Sandberg R.

Genome Biol. 2015 Aug 3;16:156. doi: 10.1186/s13059-015-0727-9.

40.

In Vivo Effects of Mesenchymal Stromal Cells in Two Patients With Severe Acute Respiratory Distress Syndrome.

Simonson OE, Mougiakakos D, Heldring N, Bassi G, Johansson HJ, Dalén M, Jitschin R, Rodin S, Corbascio M, El Andaloussi S, Wiklander OP, Nordin JZ, Skog J, Romain C, Koestler T, Hellgren-Johansson L, Schiller P, Joachimsson PO, Hägglund H, Mattsson M, Lehtiö J, Faridani OR, Sandberg R, Korsgren O, Krampera M, Weiss DJ, Grinnemo KH, Le Blanc K.

Stem Cells Transl Med. 2015 Oct;4(10):1199-213. doi: 10.5966/sctm.2015-0021. Epub 2015 Aug 18. Erratum in: Stem Cells Transl Med. 2016 Jun;5(6):845.

41.

Decoding breast cancer tissue-stroma interactions using species-specific sequencing.

Chivukula IV, Ramsköld D, Storvall H, Anderberg C, Jin S, Mamaeva V, Sahlgren C, Pietras K, Sandberg R, Lendahl U.

Breast Cancer Res. 2015 Aug 13;17:109. doi: 10.1186/s13058-015-0616-x.

42.

Effect of a Brief Massage on Pain, Anxiety, and Satisfaction With Pain Management in Postoperative Orthopaedic Patients.

Miller J, Dunion A, Dunn N, Fitzmaurice C, Gamboa M, Myers S, Novak P, Poole J, Rice K, Riley C, Sandberg R, Taylor D, Gilmore L.

Orthop Nurs. 2015 Jul-Aug;34(4):227-34. doi: 10.1097/NOR.0000000000000163.

PMID:
26213879
43.

Putting cells in their place.

Faridani OR, Sandberg R.

Nat Biotechnol. 2015 May;33(5):490-1. doi: 10.1038/nbt.3219. No abstract available.

PMID:
25965757
44.

BMP signaling and its pSMAD1/5 target genes differentially regulate hair follicle stem cell lineages.

Genander M, Cook PJ, Ramsköld D, Keyes BE, Mertz AF, Sandberg R, Fuchs E.

Cell Stem Cell. 2014 Nov 6;15(5):619-33. doi: 10.1016/j.stem.2014.09.009. Epub 2014 Oct 9.

45.

On the wavenumber spectra for sound within subsonic jets.

Agarwal A, Sinayoko S, Sandberg RD.

J Acoust Soc Am. 2014 Sep;136(3):1029. doi: 10.1121/1.4890648.

PMID:
25190378
46.

Novel functions and targets of miR-944 in human cervical cancer cells.

Xie H, Lee L, Scicluna P, Kavak E, Larsson C, Sandberg R, Lui WO.

Int J Cancer. 2015 Mar 1;136(5):E230-41. doi: 10.1002/ijc.29160. Epub 2014 Sep 4.

47.

Tn5 transposase and tagmentation procedures for massively scaled sequencing projects.

Picelli S, Björklund AK, Reinius B, Sagasser S, Winberg G, Sandberg R.

Genome Res. 2014 Dec;24(12):2033-40. doi: 10.1101/gr.177881.114. Epub 2014 Jul 30.

48.

Myelodysplastic syndromes are propagated by rare and distinct human cancer stem cells in vivo.

Woll PS, Kjällquist U, Chowdhury O, Doolittle H, Wedge DC, Thongjuea S, Erlandsson R, Ngara M, Anderson K, Deng Q, Mead AJ, Stenson L, Giustacchini A, Duarte S, Giannoulatou E, Taylor S, Karimi M, Scharenberg C, Mortera-Blanco T, Macaulay IC, Clark SA, Dybedal I, Josefsen D, Fenaux P, Hokland P, Holm MS, Cazzola M, Malcovati L, Tauro S, Bowen D, Boultwood J, Pellagatti A, Pimanda JE, Unnikrishnan A, Vyas P, Göhring G, Schlegelberger B, Tobiasson M, Kvalheim G, Constantinescu SN, Nerlov C, Nilsson L, Campbell PJ, Sandberg R, Papaemmanuil E, Hellström-Lindberg E, Linnarsson S, Jacobsen SE.

Cancer Cell. 2014 Jun 16;25(6):794-808. doi: 10.1016/j.ccr.2014.03.036. Epub 2014 May 15. Erratum in: Cancer Cell. 2014 Jun 16;25(6):861. Cancer Cell. 2015 Apr 13;27(4):603-5.

49.

Entering the era of single-cell transcriptomics in biology and medicine.

Sandberg R.

Nat Methods. 2014 Jan;11(1):22-4. No abstract available.

PMID:
24524133
50.

RNA helicase A is a downstream mediator of KIF1Bβ tumor-suppressor function in neuroblastoma.

Chen ZX, Wallis K, Fell SM, Sobrado VR, Hemmer MC, Ramsköld D, Hellman U, Sandberg R, Kenchappa RS, Martinson T, Johnsen JI, Kogner P, Schlisio S.

Cancer Discov. 2014 Apr;4(4):434-51. doi: 10.1158/2159-8290.CD-13-0362. Epub 2014 Jan 27.

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