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Items: 48

1.

Loss of SRSF3 in Cardiomyocytes Leads to Decapping of Contraction Related mRNAs and Severe Systolic Dysfunction.

Ortiz-Sánchez P, Villalba-Orero M, López-Olañeta MM, Larrasa-Alonso J, Sanchez-Cabo F, Martí-Gómez C, Camafeita E, Gomez-Salinero JM, Ramos-Hernández L, Nielsen PJ, Vazquez J, Müller-McNicoll M, Garcia-Pavia P, Lara-Pezzi E.

Circ Res. 2019 May 30. doi: 10.1161/CIRCRESAHA.118.314515. [Epub ahead of print]

PMID:
31145021
2.

Oxidized Low-Density Lipoprotein Receptor in Lymphocytes Prevents Atherosclerosis and Predicts Subclinical Disease.

Tsilingiri K, de la Fuente H, Relaño M, Sánchez-Díaz R, Rodríguez C, Crespo J, Sánchez-Cabo F, Dopazo A, Alonso-Lebrero JL, Vara A, Vázquez J, Casasnovas JM, Alfonso F, Ibáñez B, Fuster V, Martínez-González J, Martín P, Sánchez-Madrid F.

Circulation. 2019 Jan 8;139(2):243-255. doi: 10.1161/CIRCULATIONAHA.118.034326. Erratum in: Circulation. 2019 Jan 8;139(2):e4.

PMID:
30586697
3.

Deregulation of the imprinted DLK1-DIO3 locus ncRNAs is associated with replicative senescence of human adipose-derived stem cells.

García-López S, Albo-Castellanos C, Urdinguio RG, Cañón S, Sánchez-Cabo F, Martínez-Serrano A, Fraga MF, Bernad A.

PLoS One. 2018 Nov 5;13(11):e0206534. doi: 10.1371/journal.pone.0206534. eCollection 2018.

4.

Deciphering the Dynamic Transcriptional and Post-transcriptional Networks of Macrophages in the Healthy Heart and after Myocardial Injury.

Walter W, Alonso-Herranz L, Trappetti V, Crespo I, Ibberson M, Cedenilla M, Karaszewska A, Núñez V, Xenarios I, Arroyo AG, Sánchez-Cabo F, Ricote M.

Cell Rep. 2018 Apr 10;23(2):622-636. doi: 10.1016/j.celrep.2018.03.029.

5.

Ablation of the stress protease OMA1 protects against heart failure in mice.

Acin-Perez R, Lechuga-Vieco AV, Del Mar Muñoz M, Nieto-Arellano R, Torroja C, Sánchez-Cabo F, Jiménez C, González-Guerra A, Carrascoso I, Benincá C, Quiros PM, López-Otín C, Castellano JM, Ruíz-Cabello J, Jiménez-Borreguero LJ, Enríquez JA.

Sci Transl Med. 2018 Mar 28;10(434). pii: eaan4935. doi: 10.1126/scitranslmed.aan4935.

PMID:
29593106
6.

Alternative Splicing of NOX4 in the Failing Human Heart.

Varga ZV, Pipicz M, Baán JA, Baranyai T, Koncsos G, Leszek P, Kuśmierczyk M, Sánchez-Cabo F, García-Pavía P, Brenner GJ, Giricz Z, Csont T, Mendler L, Lara-Pezzi E, Pacher P, Ferdinandy P.

Front Physiol. 2017 Nov 22;8:935. doi: 10.3389/fphys.2017.00935. eCollection 2017.

7.

DNA Methylation of miR-7 is a Mechanism Involved in Platinum Response through MAFG Overexpression in Cancer Cells.

Vera O, Jimenez J, Pernia O, Rodriguez-Antolin C, Rodriguez C, Sanchez Cabo F, Soto J, Rosas R, Lopez-Magallon S, Esteban Rodriguez I, Dopazo A, Rojo F, Belda C, Alvarez R, Valentin J, Benitez J, Perona R, De Castro J, Ibanez de Caceres I.

Theranostics. 2017 Sep 22;7(17):4118-4134. doi: 10.7150/thno.20112. eCollection 2017.

8.

CTCF counter-regulates cardiomyocyte development and maturation programs in the embryonic heart.

Gomez-Velazquez M, Badia-Careaga C, Lechuga-Vieco AV, Nieto-Arellano R, Tena JJ, Rollan I, Alvarez A, Torroja C, Caceres EF, Roy AR, Galjart N, Delgado-Olguin P, Sanchez-Cabo F, Enriquez JA, Gomez-Skarmeta JL, Manzanares M.

PLoS Genet. 2017 Aug 28;13(8):e1006985. doi: 10.1371/journal.pgen.1006985. eCollection 2017 Aug.

9.

5-gene differential expression predicts stability of human intestinal allografts.

Talayero P, Alonso-Guirado L, Padilla G, Artaza H, Dopazo A, Sánchez-Cabo F, Rodríguez-Muñoz S, Calvo-Pulido J, Mancebo E, de Lacoba MG, Paz-Artal E.

Exp Mol Pathol. 2017 Oct;103(2):163-171. doi: 10.1016/j.yexmp.2017.08.008. Epub 2017 Aug 24.

PMID:
28843648
10.

miRNA profiling during antigen-dependent T cell activation: A role for miR-132-3p.

Gutiérrez-Vázquez C, Rodríguez-Galán A, Fernández-Alfara M, Mittelbrunn M, Sánchez-Cabo F, Martínez-Herrera DJ, Ramírez-Huesca M, Pascual-Montano A, Sánchez-Madrid F.

Sci Rep. 2017 Jun 14;7(1):3508. doi: 10.1038/s41598-017-03689-7.

11.

Differential leucocyte RNA expression in the coronary arteries compared to systemic circulation discriminates between patients with and those without coronary artery disease.

Ribalta J, Alipour A, Sánchez-Cabo F, Vallvé JC, Njo T, Álvarez R, Janssen H, Liem A, Dopazo A, Castro-Cabezas M.

Clin Investig Arterioscler. 2017 Mar - Apr;29(2):60-66. doi: 10.1016/j.arteri.2016.11.003. Epub 2017 Feb 7. English, Spanish.

PMID:
28188023
12.

Corrigendum: Mitochondrial and nuclear DNA matching shapes metabolism and healthy ageing.

Latorre-Pellicer A, Moreno-Loshuertos R, Lechuga-Vieco AV, Sánchez-Cabo F, Torroja C, Acín-Pérez R, Calvo E, Aix E, González-Guerra A, Logan A, Bernad-Miana ML, Romanos E, Cruz R, Cogliati S, Sobrino B, Carracedo Á, Pérez-Martos A, Fernández-Silva P, Ruíz-Cabello J, Murphy MP, Flores I, Vázquez J, Enríquez JA.

Nature. 2017 Feb 2;542(7639):124. doi: 10.1038/nature20773. Epub 2016 Dec 7. No abstract available.

PMID:
27926738
13.

Hypothesis Driven versus Hypothesis-free: Filling the Gaps in CoQ Biosynthesis.

Enríquez JA, Sánchez-Cabo F, Vázquez J.

Cell Metab. 2016 Oct 11;24(4):525-526. doi: 10.1016/j.cmet.2016.09.021.

14.

Mitochondrial and nuclear DNA matching shapes metabolism and healthy ageing.

Latorre-Pellicer A, Moreno-Loshuertos R, Lechuga-Vieco AV, Sánchez-Cabo F, Torroja C, Acín-Pérez R, Calvo E, Aix E, González-Guerra A, Logan A, Bernad-Miana ML, Romanos E, Cruz R, Cogliati S, Sobrino B, Carracedo Á, Pérez-Martos A, Fernández-Silva P, Ruíz-Cabello J, Murphy MP, Flores I, Vázquez J, Enríquez JA.

Nature. 2016 Jul 28;535(7613):561-5. Epub 2016 Jul 6.

PMID:
27383793
15.

ATtRACT-a database of RNA-binding proteins and associated motifs.

Giudice G, Sánchez-Cabo F, Torroja C, Lara-Pezzi E.

Database (Oxford). 2016 Apr 7;2016. pii: baw035. doi: 10.1093/database/baw035. Print 2016.

16.

GOplot: an R package for visually combining expression data with functional analysis.

Walter W, Sánchez-Cabo F, Ricote M.

Bioinformatics. 2015 Sep 1;31(17):2912-4. doi: 10.1093/bioinformatics/btv300. Epub 2015 May 11.

PMID:
25964631
17.

The neural crest is a source of mesenchymal stem cells with specialized hematopoietic stem cell niche function.

Isern J, García-García A, Martín AM, Arranz L, Martín-Pérez D, Torroja C, Sánchez-Cabo F, Méndez-Ferrer S.

Elife. 2014 Sep 25;3:e03696. doi: 10.7554/eLife.03696.

18.

FineSplice, enhanced splice junction detection and quantification: a novel pipeline based on the assessment of diverse RNA-Seq alignment solutions.

Gatto A, Torroja-Fungairiño C, Mazzarotto F, Cook SA, Barton PJ, Sánchez-Cabo F, Lara-Pezzi E.

Nucleic Acids Res. 2014 Apr;42(8):e71. doi: 10.1093/nar/gku166. Epub 2014 Feb 25.

19.

Sumoylated hnRNPA2B1 controls the sorting of miRNAs into exosomes through binding to specific motifs.

Villarroya-Beltri C, Gutiérrez-Vázquez C, Sánchez-Cabo F, Pérez-Hernández D, Vázquez J, Martin-Cofreces N, Martinez-Herrera DJ, Pascual-Montano A, Mittelbrunn M, Sánchez-Madrid F.

Nat Commun. 2013;4:2980. doi: 10.1038/ncomms3980.

20.

Analysis of the DNA-binding profile and function of TALE homeoproteins reveals their specialization and specific interactions with Hox genes/proteins.

Penkov D, Mateos San Martín D, Fernandez-Díaz LC, Rosselló CA, Torroja C, Sánchez-Cabo F, Warnatz HJ, Sultan M, Yaspo ML, Gabrieli A, Tkachuk V, Brendolan A, Blasi F, Torres M.

Cell Rep. 2013 Apr 25;3(4):1321-33. doi: 10.1016/j.celrep.2013.03.029. Epub 2013 Apr 18.

21.

Embryological-origin-dependent differences in homeobox expression in adult aorta: role in regional phenotypic variability and regulation of NF-κB activity.

Trigueros-Motos L, González-Granado JM, Cheung C, Fernández P, Sánchez-Cabo F, Dopazo A, Sinha S, Andrés V.

Arterioscler Thromb Vasc Biol. 2013 Jun;33(6):1248-56. doi: 10.1161/ATVBAHA.112.300539. Epub 2013 Feb 28.

PMID:
23448971
22.

Aryl hydrocarbon receptor contributes to the MEK/ERK-dependent maintenance of the immature state of human dendritic cells.

Aguilera-Montilla N, Chamorro S, Nieto C, Sánchez-Cabo F, Dopazo A, Fernández-Salguero PM, Rodríguez-Fernández JL, Pello OM, Andrés V, Cuenda A, Alonso B, Domínguez-Soto A, Sánchez-Ramón S, Corbí AL.

Blood. 2013 Apr 11;121(15):e108-17. doi: 10.1182/blood-2012-07-445106. Epub 2013 Feb 21.

23.

Spatial and temporal gene expression differences in core and periinfarct areas in experimental stroke: a microarray analysis.

Ramos-Cejudo J, Gutiérrez-Fernández M, Rodríguez-Frutos B, Expósito Alcaide M, Sánchez-Cabo F, Dopazo A, Díez-Tejedor E.

PLoS One. 2012;7(12):e52121. doi: 10.1371/journal.pone.0052121. Epub 2012 Dec 17.

24.

Procyanidins modulate microRNA expression in pancreatic islets.

Castell-Auví A, Cedó L, Movassat J, Portha B, Sánchez-Cabo F, Pallarès V, Blay M, Pinent M, Ardévol A.

J Agric Food Chem. 2013 Jan 16;61(2):355-63. doi: 10.1021/jf303972f. Epub 2013 Jan 4.

PMID:
23215023
25.

Cooperativity of stress-responsive transcription factors in core hypoxia-inducible factor binding regions.

Villar D, Ortiz-Barahona A, Gómez-Maldonado L, Pescador N, Sánchez-Cabo F, Hackl H, Rodriguez BA, Trajanoski Z, Dopazo A, Huang TH, Yan PS, Del Peso L.

PLoS One. 2012;7(9):e45708. doi: 10.1371/journal.pone.0045708. Epub 2012 Sep 24.

26.

Caveolar domain organization and trafficking is regulated by Abl kinases and mDia1.

Echarri A, Muriel O, Pavón DM, Azegrouz H, Escolar F, Terrón MC, Sanchez-Cabo F, Martínez F, Montoya MC, Llorca O, Del Pozo MA.

J Cell Sci. 2012 Jul 1;125(Pt 13):3097-113. doi: 10.1242/jcs.090134. Epub 2012 Mar 27. Erratum in: J Cell Sci. 2012 Sep 15;125(Pt 18):4413.

27.

Unidirectional transfer of microRNA-loaded exosomes from T cells to antigen-presenting cells.

Mittelbrunn M, Gutiérrez-Vázquez C, Villarroya-Beltri C, González S, Sánchez-Cabo F, González MÁ, Bernad A, Sánchez-Madrid F.

Nat Commun. 2011;2:282. doi: 10.1038/ncomms1285.

28.

Insights into global mechanisms and disease by gene expression profiling.

Sánchez-Cabo F, Rainer J, Dopazo A, Trajanoski Z, Hackl H.

Methods Mol Biol. 2011;719:269-98. doi: 10.1007/978-1-61779-027-0_13.

PMID:
21370089
29.

Statistical analysis principles for Omics data.

Dunkler D, Sánchez-Cabo F, Heinze G.

Methods Mol Biol. 2011;719:113-31. doi: 10.1007/978-1-61779-027-0_5.

PMID:
21370081
30.

PGC-1α regulates translocated in liposarcoma activity: role in oxidative stress gene expression.

Sánchez-Ramos C, Tierrez A, Fabregat-Andrés O, Wild B, Sánchez-Cabo F, Arduini A, Dopazo A, Monsalve M.

Antioxid Redox Signal. 2011 Jul 15;15(2):325-37. doi: 10.1089/ars.2010.3643. Epub 2011 May 21.

31.

A genome-wide shRNA screen for new OxPhos related genes.

Bayona-Bafaluy MP, Sánchez-Cabo F, Fernández-Silva P, Pérez-Martos A, Enríquez JA.

Mitochondrion. 2011 May;11(3):467-75. doi: 10.1016/j.mito.2011.01.007. Epub 2011 Feb 1.

PMID:
21292037
32.

Assessment of a six gene panel for the molecular detection of circulating tumor cells in the blood of female cancer patients.

Obermayr E, Sanchez-Cabo F, Tea MK, Singer CF, Krainer M, Fischer MB, Sehouli J, Reinthaller A, Horvat R, Heinze G, Tong D, Zeillinger R.

BMC Cancer. 2010 Dec 3;10:666. doi: 10.1186/1471-2407-10-666.

33.

Adaptive trimmed t-statistics for identifying predominantly high expression in a microarray experiment.

Gleiss A, Sanchez-Cabo F, Perco P, Tong D, Heinze G.

Stat Med. 2011 Jan 15;30(1):52-61. doi: 10.1002/sim.4093. Epub 2010 Oct 20.

PMID:
20963766
34.

The novel RUNX3/p33 isoform is induced upon monocyte-derived dendritic cell maturation and downregulates IL-8 expression.

Puig-Kröger A, Aguilera-Montilla N, Martínez-Nuñez R, Domínguez-Soto A, Sánchez-Cabo F, Martín-Gayo E, Zaballos A, Toribio ML, Groner Y, Ito Y, Dopazo A, Corcuera MT, Alonso Martín MJ, Vega MA, Corbí AL.

Immunobiology. 2010 Sep-Oct;215(9-10):812-20. doi: 10.1016/j.imbio.2010.05.018. Epub 2010 Jun 20.

PMID:
20615577
35.

Reconstruction of gene association network reveals a transmembrane protein required for adipogenesis and targeted by PPARγ.

Bogner-Strauss JG, Prokesch A, Sanchez-Cabo F, Rieder D, Hackl H, Duszka K, Krogsdam A, Di Camillo B, Walenta E, Klatzer A, Lass A, Pinent M, Wong WC, Eisenhaber F, Trajanoski Z.

Cell Mol Life Sci. 2010 Dec;67(23):4049-64. doi: 10.1007/s00018-010-0424-5. Epub 2010 Jun 15.

PMID:
20552250
36.

Data integration and exploration for the identification of molecular mechanisms in tumor-immune cells interaction.

Mlecnik B, Sanchez-Cabo F, Charoentong P, Bindea G, Pagès F, Berger A, Galon J, Trajanoski Z.

BMC Genomics. 2010 Feb 10;11 Suppl 1:S7. doi: 10.1186/1471-2164-11-S1-S7.

37.

Comparative transcriptomics of human multipotent stem cells during adipogenesis and osteoblastogenesis.

Scheideler M, Elabd C, Zaragosi LE, Chiellini C, Hackl H, Sanchez-Cabo F, Yadav S, Duszka K, Friedl G, Papak C, Prokesch A, Windhager R, Ailhaud G, Dani C, Amri EZ, Trajanoski Z.

BMC Genomics. 2008 Jul 17;9:340. doi: 10.1186/1471-2164-9-340.

38.

The curse of normalization.

Wolkenhauer O, Möller-Levet C, Sanchez-Cabo F.

Comp Funct Genomics. 2002;3(4):375-9. doi: 10.1002/cfg.192.

39.

Gene expression profiling of human mesenchymal stem cells derived from bone marrow during expansion and osteoblast differentiation.

Kulterer B, Friedl G, Jandrositz A, Sanchez-Cabo F, Prokesch A, Paar C, Scheideler M, Windhager R, Preisegger KH, Trajanoski Z.

BMC Genomics. 2007 Mar 12;8:70.

40.

Type, density, and location of immune cells within human colorectal tumors predict clinical outcome.

Galon J, Costes A, Sanchez-Cabo F, Kirilovsky A, Mlecnik B, Lagorce-Pagès C, Tosolini M, Camus M, Berger A, Wind P, Zinzindohoué F, Bruneval P, Cugnenc PH, Trajanoski Z, Fridman WH, Pagès F.

Science. 2006 Sep 29;313(5795):1960-4.

41.

CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis.

Rainer J, Sanchez-Cabo F, Stocker G, Sturn A, Trajanoski Z.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W498-503.

42.

Effector memory T cells, early metastasis, and survival in colorectal cancer.

Pagès F, Berger A, Camus M, Sanchez-Cabo F, Costes A, Molidor R, Mlecnik B, Kirilovsky A, Nilsson M, Damotte D, Meatchi T, Bruneval P, Cugnenc PH, Trajanoski Z, Fridman WH, Galon J.

N Engl J Med. 2005 Dec 22;353(25):2654-66.

43.

A quantization method based on threshold optimization for microarray short time series.

Di Camillo B, Sanchez-Cabo F, Toffolo G, Nair SK, Trajanoski Z, Cobelli C.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S11.

44.

Global gene expression profiling reveals widespread yet distinctive translational responses to different eukaryotic translation initiation factor 2B-targeting stress pathways.

Smirnova JB, Selley JN, Sanchez-Cabo F, Carroll K, Eddy AA, McCarthy JE, Hubbard SJ, Pavitt GD, Grant CM, Ashe MP.

Mol Cell Biol. 2005 Nov;25(21):9340-9.

45.

A fully Bayesian model to cluster gene-expression profiles.

Vogl C, Sanchez-Cabo F, Stocker G, Hubbard S, Wolkenhauer O, Trajanoski Z.

Bioinformatics. 2005 Sep 1;21 Suppl 2:ii130-6.

PMID:
16204092
46.

PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways.

Mlecnik B, Scheideler M, Hackl H, Hartler J, Sanchez-Cabo F, Trajanoski Z.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W633-7.

47.

Analysis of DNA microarray data.

Hackl H, Sanchez Cabo F, Sturn A, Wolkenhauer O, Trajanoski Z.

Curr Top Med Chem. 2004;4(13):1357-70. Review.

PMID:
15379650
48.

ArrayNorm: comprehensive normalization and analysis of microarray data.

Pieler R, Sanchez-Cabo F, Hackl H, Thallinger GG, Trajanoski Z.

Bioinformatics. 2004 Aug 12;20(12):1971-3. Epub 2004 Apr 8.

PMID:
15073026

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