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Items: 1 to 50 of 51

1.

High-level, constitutive expression of the mgtC gene confers increased thermotolerance on Salmonella enterica serovar Typhimurium.

Gall AR, Hegarty AE, Datsenko KA, Westerman RP, SanMiguel P, Csonka LN.

Mol Microbiol. 2018 Aug;109(3):327-344. doi: 10.1111/mmi.13988. Epub 2018 Jul 31.

PMID:
29802740
2.

New insights into the phylogenetics and population structure of the prairie falcon (Falco mexicanus).

Doyle JM, Bell DA, Bloom PH, Emmons G, Fesnock A, Katzner TE, LaPré L, Leonard K, SanMiguel P, Westerman R, Andrew DeWoody J.

BMC Genomics. 2018 Apr 4;19(1):233. doi: 10.1186/s12864-018-4615-z.

3.

The Cell Wall Arabinose-Deficient Arabidopsis thaliana Mutant murus5 Encodes a Defective Allele of REVERSIBLY GLYCOSYLATED POLYPEPTIDE2.

Dugard CK, Mertz RA, Rayon C, Mercadante D, Hart C, Benatti MR, Olek AT, SanMiguel PJ, Cooper BR, Reiter WD, McCann MC, Carpita NC.

Plant Physiol. 2016 Jul;171(3):1905-20. doi: 10.1104/pp.15.01922. Epub 2016 May 23.

4.

Mycoplasma haemocanis--the canine hemoplasma and its feline counterpart in the genomic era.

do Nascimento NC, Santos AP, Guimaraes AM, Sanmiguel PJ, Messick JB.

Vet Res. 2012 Sep 28;43:66. doi: 10.1186/1297-9716-43-66.

5.

Complete genome sequence of Mycoplasma wenyonii strain Massachusetts.

dos Santos AP, Guimaraes AM, do Nascimento NC, SanMiguel PJ, Messick JB.

J Bacteriol. 2012 Oct;194(19):5458-9. doi: 10.1128/JB.01240-12.

6.

Complete genome sequence of Mycoplasma haemocanis strain Illinois.

do Nascimento NC, Guimaraes AM, Santos AP, SanMiguel PJ, Messick JB.

J Bacteriol. 2012 Mar;194(6):1605-6. doi: 10.1128/JB.06781-11.

7.

Genome of Mycoplasma haemofelis, unraveling its strategies for survival and persistence.

Santos AP, Guimaraes AM, do Nascimento NC, Sanmiguel PJ, Martin SW, Messick JB.

Vet Res. 2011 Sep 21;42:102. doi: 10.1186/1297-9716-42-102.

8.

Next-generation sequencing and potential applications in fungal genomics.

Sanmiguel P.

Methods Mol Biol. 2011;722:51-60. doi: 10.1007/978-1-61779-040-9_4.

PMID:
21590412
9.

Complete genome sequence of Mycoplasma suis and insights into its biology and adaption to an erythrocyte niche.

Guimaraes AM, Santos AP, SanMiguel P, Walter T, Timenetsky J, Messick JB.

PLoS One. 2011 May 10;6(5):e19574. doi: 10.1371/journal.pone.0019574.

10.

Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis.

Tian Z, Yu Y, Lin F, Yu Y, Sanmiguel PJ, Wing RA, McCouch SR, Ma J, Jackson SA.

BMC Genomics. 2011 Mar 8;12:142. doi: 10.1186/1471-2164-12-142.

11.

An examination of targeted gene neighborhoods in strawberry.

Davis TM, Shields ME, Zhang Q, Tombolato-Terzić D, Bennetzen JL, Pontaroli AC, Wang H, Yao Q, SanMiguel P, Folta KM.

BMC Plant Biol. 2010 May 4;10:81. doi: 10.1186/1471-2229-10-81.

12.

The B73 maize genome: complexity, diversity, and dynamics.

Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen W, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M, Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D, Currie J, He R, Angelova A, Rajasekar S, Mueller T, Lomeli R, Scara G, Ko A, Delaney K, Wissotski M, Lopez G, Campos D, Braidotti M, Ashley E, Golser W, Kim H, Lee S, Lin J, Dujmic Z, Kim W, Talag J, Zuccolo A, Fan C, Sebastian A, Kramer M, Spiegel L, Nascimento L, Zutavern T, Miller B, Ambroise C, Muller S, Spooner W, Narechania A, Ren L, Wei S, Kumari S, Faga B, Levy MJ, McMahan L, Van Buren P, Vaughn MW, Ying K, Yeh CT, Emrich SJ, Jia Y, Kalyanaraman A, Hsia AP, Barbazuk WB, Baucom RS, Brutnell TP, Carpita NC, Chaparro C, Chia JM, Deragon JM, Estill JC, Fu Y, Jeddeloh JA, Han Y, Lee H, Li P, Lisch DR, Liu S, Liu Z, Nagel DH, McCann MC, SanMiguel P, Myers AM, Nettleton D, Nguyen J, Penning BW, Ponnala L, Schneider KL, Schwartz DC, Sharma A, Soderlund C, Springer NM, Sun Q, Wang H, Waterman M, Westerman R, Wolfgruber TK, Yang L, Yu Y, Zhang L, Zhou S, Zhu Q, Bennetzen JL, Dawe RK, Jiang J, Jiang N, Presting GG, Wessler SR, Aluru S, Martienssen RA, Clifton SW, McCombie WR, Wing RA, Wilson RK.

Science. 2009 Nov 20;326(5956):1112-5. doi: 10.1126/science.1178534. Erratum in: Science. 2012 Aug 31;337(6098):1040.

13.

Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome.

Baucom RS, Estill JC, Chaparro C, Upshaw N, Jogi A, Deragon JM, Westerman RP, Sanmiguel PJ, Bennetzen JL.

PLoS Genet. 2009 Nov;5(11):e1000732. doi: 10.1371/journal.pgen.1000732. Epub 2009 Nov 20.

14.

A lineage-specific centromere retrotransposon in Oryza brachyantha.

Gao D, Gill N, Kim HR, Walling JG, Zhang W, Fan C, Yu Y, Ma J, SanMiguel P, Jiang N, Cheng Z, Wing RA, Jiang J, Jackson SA.

Plant J. 2009 Dec;60(5):820-31. doi: 10.1111/j.1365-313X.2009.04005.x. Epub 2009 Aug 21.

15.

Sequence analysis of Escherichia coli O157:H7 bacteriophage PhiV10 and identification of a phage-encoded immunity protein that modifies the O157 antigen.

Perry LL, SanMiguel P, Minocha U, Terekhov AI, Shroyer ML, Farris LA, Bright N, Reuhs BL, Applegate BM.

FEMS Microbiol Lett. 2009 Mar;292(2):182-6. doi: 10.1111/j.1574-6968.2009.01511.x. Epub 2009 Feb 5.

16.

Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains.

Nelson W, Luo M, Ma J, Estep M, Estill J, He R, Talag J, Sisneros N, Kudrna D, Kim H, Ammiraju JS, Collura K, Bharti AK, Messing J, Wing RA, SanMiguel P, Bennetzen JL, Soderlund C.

BMC Genomics. 2008 Dec 19;9:621. doi: 10.1186/1471-2164-9-621.

17.

Frequent genic rearrangements in two regions of grass genomes identified by comparative sequence analysis.

Ramakrishna W, Ma J, Sanmiguel P, Emberton J, Dubcovsky J, Shiloff BA, Jiang Z, Rostoks N, Busso CS, Ogden M, Linton E, Kleinhofs A, Devos KM, Messing J, Bennetzen JL.

Comp Funct Genomics. 2002;3(2):165-6. doi: 10.1002/cfg.164. No abstract available.

18.

Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza.

Kim H, Hurwitz B, Yu Y, Collura K, Gill N, SanMiguel P, Mullikin JC, Maher C, Nelson W, Wissotski M, Braidotti M, Kudrna D, Goicoechea JL, Stein L, Ware D, Jackson SA, Soderlund C, Wing RA.

Genome Biol. 2008;9(2):R45. doi: 10.1186/gb-2008-9-2-r45. Epub 2008 Feb 28.

19.

A unified classification system for eukaryotic transposable elements.

Wicker T, Sabot F, Hua-Van A, Bennetzen JL, Capy P, Chalhoub B, Flavell A, Leroy P, Morgante M, Panaud O, Paux E, SanMiguel P, Schulman AH.

Nat Rev Genet. 2007 Dec;8(12):973-82. Review.

PMID:
17984973
20.

Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza.

Ammiraju JS, Zuccolo A, Yu Y, Song X, Piegu B, Chevalier F, Walling JG, Ma J, Talag J, Brar DS, SanMiguel PJ, Jiang N, Jackson SA, Panaud O, Wing RA.

Plant J. 2007 Oct;52(2):342-51. Epub 2007 Aug 30.

21.

Fine mapping of the Pc locus of Sorghum bicolor, a gene controlling the reaction to a fungal pathogen and its host-selective toxin.

Nagy ED, Lee TC, Ramakrishna W, Xu Z, Klein PE, SanMiguel P, Cheng CP, Li J, Devos KM, Schertz K, Dunkle L, Bennetzen JL.

Theor Appl Genet. 2007 Apr;114(6):961-70. Epub 2007 Mar 14.

PMID:
17356869
22.

The TIGR Maize Database.

Chan AP, Pertea G, Cheung F, Lee D, Zheng L, Whitelaw C, Pontaroli AC, SanMiguel P, Yuan Y, Bennetzen J, Barbazuk WB, Quackenbush J, Rabinowicz PD.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D771-6.

23.

The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza.

Ammiraju JS, Luo M, Goicoechea JL, Wang W, Kudrna D, Mueller C, Talag J, Kim H, Sisneros NB, Blackmon B, Fang E, Tomkins JB, Brar D, MacKill D, McCouch S, Kurata N, Lambert G, Galbraith DW, Arumuganathan K, Rao K, Walling JG, Gill N, Yu Y, SanMiguel P, Soderlund C, Jackson S, Wing RA.

Genome Res. 2006 Jan;16(1):140-7. Epub 2005 Dec 12.

24.

The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species.

Wing RA, Ammiraju JS, Luo M, Kim H, Yu Y, Kudrna D, Goicoechea JL, Wang W, Nelson W, Rao K, Brar D, Mackill DJ, Han B, Soderlund C, Stein L, SanMiguel P, Jackson S.

Plant Mol Biol. 2005 Sep;59(1):53-62.

PMID:
16217601
25.

Gene enrichment in maize with hypomethylated partial restriction (HMPR) libraries.

Emberton J, Ma J, Yuan Y, SanMiguel P, Bennetzen JL.

Genome Res. 2005 Oct;15(10):1441-6.

26.

Pericentromeric regions of soybean (Glycine max L. Merr.) chromosomes consist of retroelements and tandemly repeated DNA and are structurally and evolutionarily labile.

Lin JY, Jacobus BH, SanMiguel P, Walling JG, Yuan Y, Shoemaker RC, Young ND, Jackson SA.

Genetics. 2005 Jul;170(3):1221-30. Epub 2005 May 6.

27.

DNA rearrangement in orthologous orp regions of the maize, rice and sorghum genomes.

Ma J, SanMiguel P, Lai J, Messing J, Bennetzen JL.

Genetics. 2005 Jul;170(3):1209-20. Epub 2005 Apr 16.

28.

The wheat VRN2 gene is a flowering repressor down-regulated by vernalization.

Yan L, Loukoianov A, Blechl A, Tranquilli G, Ramakrishna W, SanMiguel P, Bennetzen JL, Echenique V, Dubcovsky J.

Science. 2004 Mar 12;303(5664):1640-4.

29.

Enrichment of gene-coding sequences in maize by genome filtration.

Whitelaw CA, Barbazuk WB, Pertea G, Chan AP, Cheung F, Lee Y, Zheng L, van Heeringen S, Karamycheva S, Bennetzen JL, SanMiguel P, Lakey N, Bedell J, Yuan Y, Budiman MA, Resnick A, Van Aken S, Utterback T, Riedmuller S, Williams M, Feldblyum T, Schubert K, Beachy R, Fraser CM, Quackenbush J.

Science. 2003 Dec 19;302(5653):2118-20.

30.

Structure and evolution of the Cinful retrotransposon family of maize.

Sanz-Alferez S, SanMiguel P, Jin YK, Springer PS, Bennetzen JL.

Genome. 2003 Oct;46(5):745-52.

PMID:
14608391
31.

A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomes.

Ilic K, SanMiguel PJ, Bennetzen JL.

Proc Natl Acad Sci U S A. 2003 Oct 14;100(21):12265-70. Epub 2003 Oct 6.

32.

High-Cot sequence analysis of the maize genome.

Yuan Y, SanMiguel PJ, Bennetzen JL.

Plant J. 2003 Apr;34(2):249-55. Erratum in: Plant J. 2003 Nov;36(3):430.

33.

Comparative sequence analysis of the sorghum Rph region and the maize Rp1 resistance gene complex.

Ramakrishna W, Emberton J, SanMiguel P, Ogden M, Llaca V, Messing J, Bennetzen JL.

Plant Physiol. 2002 Dec;130(4):1728-38.

34.

Cereal genes similar to Snf2 define a new subfamily that includes human and mouse genes.

Yan L, Echenique V, Busso C, SanMiguel P, Ramakrishna W, Bennetzen JL, Harrington S, Dubcovsky J.

Mol Genet Genomics. 2002 Dec;268(4):488-99. Epub 2002 Oct 24.

35.

Structural analysis of the maize rp1 complex reveals numerous sites and unexpected mechanisms of local rearrangement.

Ramakrishna W, Emberton J, Ogden M, SanMiguel P, Bennetzen JL.

Plant Cell. 2002 Dec;14(12):3213-23.

36.

Different types and rates of genome evolution detected by comparative sequence analysis of orthologous segments from four cereal genomes.

Ramakrishna W, Dubcovsky J, Park YJ, Busso C, Emberton J, SanMiguel P, Bennetzen JL.

Genetics. 2002 Nov;162(3):1389-400.

37.
38.

Transposable elements, genes and recombination in a 215-kb contig from wheat chromosome 5A(m).

SanMiguel PJ, Ramakrishna W, Bennetzen JL, Busso CS, Dubcovsky J.

Funct Integr Genomics. 2002 May;2(1-2):70-80. Epub 2002 Apr 12.

PMID:
12021852
39.

Genomic sequencing reveals gene content, genomic organization, and recombination relationships in barley.

Rostoks N, Park YJ, Ramakrishna W, Ma J, Druka A, Shiloff BA, SanMiguel PJ, Jiang Z, Brueggeman R, Sandhu D, Gill K, Bennetzen JL, Kleinhofs A.

Funct Integr Genomics. 2002 May;2(1-2):51-9. Epub 2002 Apr 25.

PMID:
12021850
40.

Comparative sequence analysis of colinear barley and rice bacterial artificial chromosomes.

Dubcovsky J, Ramakrishna W, SanMiguel PJ, Busso CS, Yan L, Shiloff BA, Bennetzen JL.

Plant Physiol. 2001 Mar;125(3):1342-53.

41.

Colinearity and its exceptions in orthologous adh regions of maize and sorghum.

Tikhonov AP, SanMiguel PJ, Nakajima Y, Gorenstein NM, Bennetzen JL, Avramova Z.

Proc Natl Acad Sci U S A. 1999 Jun 22;96(13):7409-14.

42.

The paleontology of intergene retrotransposons of maize.

SanMiguel P, Gaut BS, Tikhonov A, Nakajima Y, Bennetzen JL.

Nat Genet. 1998 Sep;20(1):43-5.

PMID:
9731528
43.

Grass genomes.

Bennetzen JL, SanMiguel P, Chen M, Tikhonov A, Francki M, Avramova Z.

Proc Natl Acad Sci U S A. 1998 Mar 3;95(5):1975-8.

44.

Sequence organization and conservation in sh2/a1-homologous regions of sorghum and rice.

Chen M, SanMiguel P, Bennetzen JL.

Genetics. 1998 Jan;148(1):435-43.

45.

Demonstration of vertical transmission of Streptococcus suis in swine by genomic fingerprinting.

Amass SF, SanMiguel P, Clark LK.

J Clin Microbiol. 1997 Jun;35(6):1595-6.

46.

Microcolinearity in sh2-homologous regions of the maize, rice, and sorghum genomes.

Chen M, SanMiguel P, de Oliveira AC, Woo SS, Zhang H, Wing RA, Bennetzen JL.

Proc Natl Acad Sci U S A. 1997 Apr 1;94(7):3431-5.

47.

Gene identification in a complex chromosomal continuum by local genomic cross-referencing.

Avramova Z, Tikhonov A, SanMiguel P, Jin YK, Liu C, Woo SS, Wing RA, Bennetzen JL.

Plant J. 1996 Dec;10(6):1163-8.

48.

Nested retrotransposons in the intergenic regions of the maize genome.

SanMiguel P, Tikhonov A, Jin YK, Motchoulskaia N, Zakharov D, Melake-Berhan A, Springer PS, Edwards KJ, Lee M, Avramova Z, Bennetzen JL.

Science. 1996 Nov 1;274(5288):765-8.

PMID:
8864112
49.

The Hybaid Lecture. Microcollinearity and segmental duplication in the evolution of grass nuclear genomes.

Bennetzen JL, SanMiguel P, Liu CN, Chen M, Tikhonov A, Costa de Oliveira A, Jin YK, Avramova Z, Woo SS, Zhang H, Wing RA.

Symp Soc Exp Biol. 1996;50:1-3.

PMID:
9039427
50.

Matrix attachment regions and transcribed sequences within a long chromosomal continuum containing maize Adh1.

Avramova Z, SanMiguel P, Georgieva E, Bennetzen JL.

Plant Cell. 1995 Oct;7(10):1667-80.

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