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Items: 36

1.

Long-Read Genome Sequence of the Sugar Beet Rhizosphere Mycoparasite Pythium oligandrum.

Faure C, Veyssière M, Boëlle B, San Clemente H, Bouchez O, Lopez-Roques C, Chaubet A, Martinez Y, Bezouška K, Suchánek M, Gaulin E, Rey T, Dumas B.

G3 (Bethesda). 2020 Feb 6;10(2):431-436. doi: 10.1534/g3.119.400746.

2.

Advanced Cataloging of Lysine-63 Polyubiquitin Networks by Genomic, Interactome, and Sensor-Based Proteomic Analyses.

Romero-Barrios N, Monachello D, Dolde U, Wong A, San Clemente H, Cayrel A, Johnson A, Lurin C, Vert G.

Plant Cell. 2020 Jan;32(1):123-138. doi: 10.1105/tpc.19.00568. Epub 2019 Nov 11.

PMID:
31712406
3.

Phenotypic Trait Variation as a Response to Altitude-Related Constraints in Arabidopsis Populations.

Duruflé H, Ranocha P, Mbadinga Mbadinga DL, Déjean S, Bonhomme M, San Clemente H, Viudes S, Eljebbawi A, Delorme-Hinoux V, Sáez-Vásquez J, Reichheld JP, Escaravage N, Burrus M, Dunand C.

Front Plant Sci. 2019 Apr 9;10:430. doi: 10.3389/fpls.2019.00430. eCollection 2019.

4.

A systems biology view of wood formation in Eucalyptus grandis trees submitted to different potassium and water regimes.

Ployet R, Veneziano Labate MT, Regiani Cataldi T, Christina M, Morel M, San Clemente H, Denis M, Favreau B, Tomazello Filho M, Laclau JP, Labate CA, Chaix G, Grima-Pettenati J, Mounet F.

New Phytol. 2019 Jul;223(2):766-782. doi: 10.1111/nph.15802. Epub 2019 Apr 17.

PMID:
30887522
5.

Identification of new signalling peptides through a genome-wide survey of 250 fungal secretomes.

Le Marquer M, San Clemente H, Roux C, Savelli B, Frei Dit Frey N.

BMC Genomics. 2019 Jan 18;20(1):64. doi: 10.1186/s12864-018-5414-2. Erratum in: BMC Genomics. 2019 Jan 30;20(1):94.

6.

Comparative genomics of Rhizophagus irregularis, R. cerebriforme, R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina.

Morin E, Miyauchi S, San Clemente H, Chen ECH, Pelin A, de la Providencia I, Ndikumana S, Beaudet D, Hainaut M, Drula E, Kuo A, Tang N, Roy S, Viala J, Henrissat B, Grigoriev IV, Corradi N, Roux C, Martin FM.

New Phytol. 2019 May;222(3):1584-1598. doi: 10.1111/nph.15687. Epub 2019 Feb 25.

PMID:
30636349
7.

Genomics analysis of Aphanomyces spp. identifies a new class of oomycete effector associated with host adaptation.

Gaulin E, Pel MJC, Camborde L, San-Clemente H, Courbier S, Dupouy MA, Lengellé J, Veyssiere M, Le Ru A, Grandjean F, Cordaux R, Moumen B, Gilbert C, Cano LM, Aury JM, Guy J, Wincker P, Bouchez O, Klopp C, Dumas B.

BMC Biol. 2018 Apr 18;16(1):43. doi: 10.1186/s12915-018-0508-5.

8.

Corrigendum: The Comparison of Expressed Candidate Secreted Proteins from Two Arbuscular Mycorrhizal Fungi Unravels Common and Specific Molecular Tools to Invade Different Host Plants.

Kamel L, Tang N, Malbreil M, San Clemente H, Le Marquer M, Roux C, Frei Dit Frey N.

Front Plant Sci. 2017 Dec 8;8:2065. doi: 10.3389/fpls.2017.02065. eCollection 2017.

9.

Plant extracellular vesicles are incorporated by a fungal pathogen and inhibit its growth.

Regente M, Pinedo M, San Clemente H, Balliau T, Jamet E, de la Canal L.

J Exp Bot. 2017 Nov 28;68(20):5485-5495. doi: 10.1093/jxb/erx355.

PMID:
29145622
10.

Cell wall modifications of two Arabidopsis thaliana ecotypes, Col and Sha, in response to sub-optimal growth conditions: An integrative study.

Duruflé H, Hervé V, Ranocha P, Balliau T, Zivy M, Chourré J, San Clemente H, Burlat V, Albenne C, Déjean S, Jamet E, Dunand C.

Plant Sci. 2017 Oct;263:183-193. doi: 10.1016/j.plantsci.2017.07.015. Epub 2017 Jul 20.

PMID:
28818374
11.

Understanding the Remodelling of Cell Walls during Brachypodium distachyon Grain Development through a Sub-Cellular Quantitative Proteomic Approach.

Francin-Allami M, Lollier V, Pavlovic M, San Clemente H, Rogniaux H, Jamet E, Guillon F, Larré C.

Proteomes. 2016 Jun 24;4(3). pii: E21. doi: 10.3390/proteomes4030021.

12.

The Comparison of Expressed Candidate Secreted Proteins from Two Arbuscular Mycorrhizal Fungi Unravels Common and Specific Molecular Tools to Invade Different Host Plants.

Kamel L, Tang N, Malbreil M, San Clemente H, Le Marquer M, Roux C, Frei Dit Frey N.

Front Plant Sci. 2017 Feb 7;8:124. doi: 10.3389/fpls.2017.00124. eCollection 2017. Erratum in: Front Plant Sci. 2017 Dec 08;8:2065.

13.

Special trends in CBF and DREB2 groups in Eucalyptus gunnii vs Eucalyptus grandis suggest that CBF are master players in the trade-off between growth and stress resistance.

Nguyen HC, Cao PB, San Clemente H, Ployet R, Mounet F, Ladouce N, Harvengt L, Marque C, Teulieres C.

Physiol Plant. 2017 Apr;159(4):445-467. doi: 10.1111/ppl.12529. Epub 2017 Jan 12.

PMID:
27861954
14.

An enlarged cell wall proteome of Arabidopsis thaliana rosettes.

Hervé V, Duruflé H, San Clemente H, Albenne C, Balliau T, Zivy M, Dunand C, Jamet E.

Proteomics. 2016 Dec;16(24):3183-3187. doi: 10.1002/pmic.201600290.

PMID:
27775233
15.

A Survey of the Gene Repertoire of Gigaspora rosea Unravels Conserved Features among Glomeromycota for Obligate Biotrophy.

Tang N, San Clemente H, Roy S, Bécard G, Zhao B, Roux C.

Front Microbiol. 2016 Mar 1;7:233. doi: 10.3389/fmicb.2016.00233. eCollection 2016.

16.

Cell wall proteome of sugarcane stems: comparison of a destructive and a non-destructive extraction method showed differences in glycoside hydrolases and peroxidases.

Calderan-Rodrigues MJ, Jamet E, Douché T, Bonassi MB, Cataldi TR, Fonseca JG, San Clemente H, Pont-Lezica R, Labate CA.

BMC Plant Biol. 2016 Jan 11;16:14. doi: 10.1186/s12870-015-0677-0.

17.

Arabidopsis thaliana root cell wall proteomics: Increasing the proteome coverage using a combinatorial peptide ligand library and description of unexpected Hyp in peroxidase amino acid sequences.

Nguyen-Kim H, San Clemente H, Balliau T, Zivy M, Dunand C, Albenne C, Jamet E.

Proteomics. 2016 Feb;16(3):491-503. doi: 10.1002/pmic.201500129.

PMID:
26572690
18.

Genomic Signature of Selective Sweeps Illuminates Adaptation of Medicago truncatula to Root-Associated Microorganisms.

Bonhomme M, Boitard S, San Clemente H, Dumas B, Young N, Jacquet C.

Mol Biol Evol. 2015 Aug;32(8):2097-110. doi: 10.1093/molbev/msv092. Epub 2015 Apr 21.

19.

WallProtDB, a database resource for plant cell wall proteomics.

San Clemente H, Jamet E.

Plant Methods. 2015 Jan 16;11(1):2. doi: 10.1186/s13007-015-0045-y. eCollection 2015.

20.

Comprehensive genome-wide analysis of the Aux/IAA gene family in Eucalyptus: evidence for the role of EgrIAA4 in wood formation.

Yu H, Soler M, San Clemente H, Mila I, Paiva JA, Myburg AA, Bouzayen M, Grima-Pettenati J, Cassan-Wang H.

Plant Cell Physiol. 2015 Apr;56(4):700-14. doi: 10.1093/pcp/pcu215. Epub 2015 Jan 9.

PMID:
25577568
21.

Genome-wide characterization and expression profiling of the AUXIN RESPONSE FACTOR (ARF) gene family in Eucalyptus grandis.

Yu H, Soler M, Mila I, San Clemente H, Savelli B, Dunand C, Paiva JA, Myburg AA, Bouzayen M, Grima-Pettenati J, Cassan-Wang H.

PLoS One. 2014 Sep 30;9(9):e108906. doi: 10.1371/journal.pone.0108906. eCollection 2014.

22.

The Eucalyptus grandis R2R3-MYB transcription factor family: evidence for woody growth-related evolution and function.

Soler M, Camargo EL, Carocha V, Cassan-Wang H, San Clemente H, Savelli B, Hefer CA, Paiva JA, Myburg AA, Grima-Pettenati J.

New Phytol. 2015 Jun;206(4):1364-77. doi: 10.1111/nph.13039. Epub 2014 Sep 24.

23.

Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis.

Tisserant E, Malbreil M, Kuo A, Kohler A, Symeonidi A, Balestrini R, Charron P, Duensing N, Frei dit Frey N, Gianinazzi-Pearson V, Gilbert LB, Handa Y, Herr JR, Hijri M, Koul R, Kawaguchi M, Krajinski F, Lammers PJ, Masclaux FG, Murat C, Morin E, Ndikumana S, Pagni M, Petitpierre D, Requena N, Rosikiewicz P, Riley R, Saito K, San Clemente H, Shapiro H, van Tuinen D, Bécard G, Bonfante P, Paszkowski U, Shachar-Hill YY, Tuskan GA, Young JP, Sanders IR, Henrissat B, Rensing SA, Grigoriev IV, Corradi N, Roux C, Martin F.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20117-22. doi: 10.1073/pnas.1313452110. Epub 2013 Nov 25. Erratum in: Proc Natl Acad Sci U S A. 2014 Jan 7;111(1):563. Young, Peter W [corrected to Young, J Peter W].

24.

Brachypodium distachyon as a model plant toward improved biofuel crops: Search for secreted proteins involved in biogenesis and disassembly of cell wall polymers.

Douché T, San Clemente H, Burlat V, Roujol D, Valot B, Zivy M, Pont-Lezica R, Jamet E.

Proteomics. 2013 Aug;13(16):2438-54. doi: 10.1002/pmic.201200507. Epub 2013 Jul 23.

PMID:
23784962
25.

Transcriptome analysis of tobacco BY-2 cells elicited by cryptogein reveals new potential actors of calcium-dependent and calcium-independent plant defense pathways.

Amelot N, Dorlhac de Borne F, San Clemente H, Mazars C, Grima-Pettenati J, Brière C.

Cell Calcium. 2012 Feb;51(2):117-30. doi: 10.1016/j.ceca.2011.11.010. Epub 2011 Dec 15.

PMID:
22177386
26.

Analysis of the xylem sap proteome of Brassica oleracea reveals a high content in secreted proteins.

Ligat L, Lauber E, Albenne C, San Clemente H, Valot B, Zivy M, Pont-Lezica R, Arlat M, Jamet E.

Proteomics. 2011 May;11(9):1798-813. doi: 10.1002/pmic.201000781. Epub 2011 Mar 17.

27.

Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries.

Paiva JA, Prat E, Vautrin S, Santos MD, San-Clemente H, Brommonschenkel S, Fonseca PG, Grattapaglia D, Song X, Ammiraju JS, Kudrna D, Wing RA, Freitas AT, Bergès H, Grima-Pettenati J.

BMC Genomics. 2011 Mar 4;12:137. doi: 10.1186/1471-2164-12-137.

28.

Cell wall biogenesis of Arabidopsis thaliana elongating cells: transcriptomics complements proteomics.

Jamet E, Roujol D, San-Clemente H, Irshad M, Soubigou-Taconnat L, Renou JP, Pont-Lezica R.

BMC Genomics. 2009 Oct 31;10:505. doi: 10.1186/1471-2164-10-505.

29.

Plant cell wall proteomics: mass spectrometry data, a trove for research on protein structure/function relationships.

Albenne C, Canut H, Boudart G, Zhang Y, San Clemente H, Pont-Lezica R, Jamet E.

Mol Plant. 2009 Sep;2(5):977-89. doi: 10.1093/mp/ssp059. Epub 2009 Aug 10.

30.

A new genomic resource dedicated to wood formation in Eucalyptus.

Rengel D, San Clemente H, Servant F, Ladouce N, Paux E, Wincker P, Couloux A, Sivadon P, Grima-Pettenati J.

BMC Plant Biol. 2009 Mar 27;9:36. doi: 10.1186/1471-2229-9-36.

31.

Transcriptomic analysis of Arabidopsis developing stems: a close-up on cell wall genes.

Minic Z, Jamet E, San-Clemente H, Pelletier S, Renou JP, Rihouey C, Okinyo DP, Proux C, Lerouge P, Jouanin L.

BMC Plant Biol. 2009 Jan 16;9:6. doi: 10.1186/1471-2229-9-6.

32.

AphanoDB: a genomic resource for Aphanomyces pathogens.

Madoui MA, Gaulin E, Mathé C, San Clemente H, Couloux A, Wincker P, Dumas B.

BMC Genomics. 2007 Dec 20;8:471.

33.

MAIZEWALL. Database and developmental gene expression profiling of cell wall biosynthesis and assembly in maize.

Guillaumie S, San-Clemente H, Deswarte C, Martinez Y, Lapierre C, Murigneux A, Barrière Y, Pichon M, Goffner D.

Plant Physiol. 2007 Jan;143(1):339-63. Epub 2006 Nov 10.

34.

Transcript profiling of a xylem vs phloem cDNA subtractive library identifies new genes expressed during xylogenesis in Eucalyptus.

Foucart C, Paux E, Ladouce N, San-Clemente H, Grima-Pettenati J, Sivadon P.

New Phytol. 2006;170(4):739-52.

35.

BEN as a presumptive target recognition molecule during the development of the olivocerebellar system.

Chédotal A, Pourquié O, Ezan F, San Clemente H, Sotelo C.

J Neurosci. 1996 May 15;16(10):3296-310.

36.

[Early ontogeny of the human hematopoietic system].

Charbord P, Tavian M, Coulombel L, Luton D, San Clemente H, Humeau L, Dieterlen-Lièvre F, Péault B.

C R Seances Soc Biol Fil. 1995;189(4):601-9. Review. French.

PMID:
8564574

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