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Items: 1 to 50 of 85

1.

Accurate and Sensitive Analysis of Minimal Residual Disease in Acute Myeloid Leukemia Using Deep Sequencing of Single Nucleotide Variations.

Delsing Malmberg E, Rehammar A, Pereira MB, Abrahamsson J, Samuelsson T, Ståhlman S, Asp J, Tierens A, Palmqvist L, Kristiansson E, Fogelstrand L.

J Mol Diagn. 2019 Jan;21(1):149-162. doi: 10.1016/j.jmoldx.2018.08.004. Epub 2018 Sep 29.

PMID:
30273780
2.

Minimal residual disease assessed with deep sequencing of NPM1 mutations predicts relapse after allogeneic stem cell transplant in AML.

Delsing Malmberg E, Johansson Alm S, Nicklasson M, Lazarevic V, Ståhlman S, Samuelsson T, Lenhoff S, Asp J, Ehinger M, Palmqvist L, Brune M, Fogelstrand L.

Leuk Lymphoma. 2018 Aug 2:1-9. doi: 10.1080/10428194.2018.1485910. [Epub ahead of print]

PMID:
30068244
3.

Helicobacter suis binding to carbohydrates on human and porcine gastric mucins and glycolipids occurs via two modes.

Padra M, Adamczyk B, Benktander J, Flahou B, Skoog EC, Padra JT, Smet A, Jin C, Ducatelle R, Samuelsson T, Haesebrouck F, Karlsson NG, Teneberg S, Lindén SK.

Virulence. 2018 Dec 31;9(1):898-918. doi: 10.1080/21505594.2018.1460979.

4.

CDK9 and SPT5 proteins are specifically required for expression of herpes simplex virus 1 replication-dependent late genes.

Zhao Z, Tang KW, Muylaert I, Samuelsson T, Elias P.

J Biol Chem. 2017 Sep 15;292(37):15489-15500. doi: 10.1074/jbc.M117.806000. Epub 2017 Jul 25.

5.

Aeromonas salmonicida Growth in Response to Atlantic Salmon Mucins Differs between Epithelial Sites, Is Governed by Sialylated and N-Acetylhexosamine-Containing O-Glycans, and Is Affected by Ca2.

Padra JT, Sundh H, Sundell K, Venkatakrishnan V, Jin C, Samuelsson T, Karlsson NG, Lindén SK.

Infect Immun. 2017 Jul 19;85(8). pii: e00189-17. doi: 10.1128/IAI.00189-17. Print 2017 Aug.

6.

Patient-tailored analysis of minimal residual disease in acute myeloid leukemia using next-generation sequencing.

Malmberg EB, Ståhlman S, Rehammar A, Samuelsson T, Alm SJ, Kristiansson E, Abrahamsson J, Garelius H, Pettersson L, Ehinger M, Palmqvist L, Fogelstrand L.

Eur J Haematol. 2017 Jan;98(1):26-37. doi: 10.1111/ejh.12780. Epub 2016 Jun 8.

PMID:
27197529
7.

Searching the Evolutionary Origin of Epithelial Mucus Protein Components-Mucins and FCGBP.

Lang T, Klasson S, Larsson E, Johansson ME, Hansson GC, Samuelsson T.

Mol Biol Evol. 2016 Aug;33(8):1921-36. doi: 10.1093/molbev/msw066. Epub 2016 Apr 4.

8.

Loss of the Mediator subunit Med20 affects transcription of tRNA and other non-coding RNA genes in fission yeast.

Carlsten JO, Zhu X, López MD, Samuelsson T, Gustafsson CM.

Biochim Biophys Acta. 2016 Feb;1859(2):339-47. doi: 10.1016/j.bbagrm.2015.11.007. Epub 2015 Nov 19.

PMID:
26608234
9.

Evolution, diversification, and expression of KNOX proteins in plants.

Gao J, Yang X, Zhao W, Lang T, Samuelsson T.

Front Plant Sci. 2015 Oct 23;6:882. doi: 10.3389/fpls.2015.00882. eCollection 2015.

10.

Noncanoncial signal recognition particle RNAs in a major eukaryotic phylum revealed by purification of SRP from the human pathogen Cryptococcus neoformans.

Dumesic PA, Rosenblad MA, Samuelsson T, Nguyen T, Moresco JJ, Yates JR 3rd, Madhani HD.

Nucleic Acids Res. 2015 Oct 15;43(18):9017-27. doi: 10.1093/nar/gkv819. Epub 2015 Aug 14.

11.

Regulation of DNA replication at the end of the mitochondrial D-loop involves the helicase TWINKLE and a conserved sequence element.

Jemt E, Persson Ö, Shi Y, Mehmedovic M, Uhler JP, Dávila López M, Freyer C, Gustafsson CM, Samuelsson T, Falkenberg M.

Nucleic Acids Res. 2015 Oct 30;43(19):9262-75. doi: 10.1093/nar/gkv804. Epub 2015 Aug 7.

12.

Simultaneous DNA and RNA Mapping of Somatic Mitochondrial Mutations across Diverse Human Cancers.

Stewart JB, Alaei-Mahabadi B, Sabarinathan R, Samuelsson T, Gorodkin J, Gustafsson CM, Larsson E.

PLoS Genet. 2015 Jun 30;11(6):e1005333. doi: 10.1371/journal.pgen.1005333. eCollection 2015 Jun.

13.

Zebrafish as a model to study live mucus physiology.

Jevtov I, Samuelsson T, Yao G, Amsterdam A, Ribbeck K.

Sci Rep. 2014 Oct 17;4:6653. doi: 10.1038/srep06653.

14.

The UbL protein UBTD1 stably interacts with the UBE2D family of E2 ubiquitin conjugating enzymes.

Uhler JP, Spåhr H, Farge G, Clavel S, Larsson NG, Falkenberg M, Samuelsson T, Gustafsson CM.

Biochem Biophys Res Commun. 2014 Jan 3;443(1):7-12. doi: 10.1016/j.bbrc.2013.10.137. Epub 2013 Nov 6.

PMID:
24211586
15.

The landscape of viral expression and host gene fusion and adaptation in human cancer.

Tang KW, Alaei-Mahabadi B, Samuelsson T, Lindh M, Larsson E.

Nat Commun. 2013;4:2513. doi: 10.1038/ncomms3513.

16.

In vivo mutagenesis reveals that OriL is essential for mitochondrial DNA replication.

Wanrooij S, Miralles Fusté J, Stewart JB, Wanrooij PH, Samuelsson T, Larsson NG, Gustafsson CM, Falkenberg M.

EMBO Rep. 2012 Dec;13(12):1130-7. doi: 10.1038/embor.2012.161. Epub 2012 Oct 23.

17.

RNAcentral: A vision for an international database of RNA sequences.

Bateman A, Agrawal S, Birney E, Bruford EA, Bujnicki JM, Cochrane G, Cole JR, Dinger ME, Enright AJ, Gardner PP, Gautheret D, Griffiths-Jones S, Harrow J, Herrero J, Holmes IH, Huang HD, Kelly KA, Kersey P, Kozomara A, Lowe TM, Marz M, Moxon S, Pruitt KD, Samuelsson T, Stadler PF, Vilella AJ, Vogel JH, Williams KP, Wright MW, Zwieb C.

RNA. 2011 Nov;17(11):1941-6. doi: 10.1261/rna.2750811. Epub 2011 Sep 22.

18.

eGOB: eukaryotic Gene Order Browser.

López MD, Samuelsson T.

Bioinformatics. 2011 Apr 15;27(8):1150-1. doi: 10.1093/bioinformatics/btr075. Epub 2011 Feb 10.

PMID:
21317139
19.

LRPPRC is a mitochondrial matrix protein that is conserved in metazoans.

Sterky FH, Ruzzenente B, Gustafsson CM, Samuelsson T, Larsson NG.

Biochem Biophys Res Commun. 2010 Aug 6;398(4):759-64. doi: 10.1016/j.bbrc.2010.07.019. Epub 2010 Jul 13.

PMID:
20633537
20.

Analysis of gene order conservation in eukaryotes identifies transcriptionally and functionally linked genes.

Dávila López M, Martínez Guerra JJ, Samuelsson T.

PLoS One. 2010 May 14;5(5):e10654. doi: 10.1371/journal.pone.0010654.

21.

Structure of mitochondrial transcription termination factor 3 reveals a novel nucleic acid-binding domain.

Spåhr H, Samuelsson T, Hällberg BM, Gustafsson CM.

Biochem Biophys Res Commun. 2010 Jul 2;397(3):386-90. doi: 10.1016/j.bbrc.2010.04.130. Epub 2010 Apr 27.

PMID:
20430012
22.

U12 type introns were lost at multiple occasions during evolution.

Bartschat S, Samuelsson T.

BMC Genomics. 2010 Feb 11;11:106. doi: 10.1186/1471-2164-11-106.

23.

Kinship in the SRP RNA family.

Rosenblad MA, Larsen N, Samuelsson T, Zwieb C.

RNA Biol. 2009 Nov-Dec;6(5):508-16. Epub 2009 Nov 7.

PMID:
19838050
24.

Conserved and variable domains of RNase MRP RNA.

Dávila López M, Rosenblad MA, Samuelsson T.

RNA Biol. 2009 Jul-Aug;6(3):208-20. Epub 2009 Jul 30. Review.

PMID:
19395864
25.

Combination of reverse and chemical genetic screens reveals angiogenesis inhibitors and targets.

Kalén M, Wallgard E, Asker N, Nasevicius A, Athley E, Billgren E, Larson JD, Wadman SA, Norseng E, Clark KJ, He L, Karlsson-Lindahl L, Häger AK, Weber H, Augustin H, Samuelsson T, Kemmet CK, Utesch CM, Essner JJ, Hackett PB, Hellström M.

Chem Biol. 2009 Apr 24;16(4):432-41. doi: 10.1016/j.chembiol.2009.02.010.

26.

Computational screen for spliceosomal RNA genes aids in defining the phylogenetic distribution of major and minor spliceosomal components.

Dávila López M, Rosenblad MA, Samuelsson T.

Nucleic Acids Res. 2008 May;36(9):3001-10. doi: 10.1093/nar/gkn142. Epub 2008 Apr 4.

27.

The glomerular transcriptome and a predicted protein-protein interaction network.

He L, Sun Y, Takemoto M, Norlin J, Tryggvason K, Samuelsson T, Betsholtz C.

J Am Soc Nephrol. 2008 Feb;19(2):260-8. Epub 2007 Nov 21.

28.

Early evolution of histone mRNA 3' end processing.

Dávila López M, Samuelsson T.

RNA. 2008 Jan;14(1):1-10. Epub 2007 Nov 12.

29.

Gel-forming mucins appeared early in metazoan evolution.

Lang T, Hansson GC, Samuelsson T.

Proc Natl Acad Sci U S A. 2007 Oct 9;104(41):16209-14. Epub 2007 Oct 2.

30.

Useful 'junk': Alu RNAs in the human transcriptome.

Häsler J, Samuelsson T, Strub K.

Cell Mol Life Sci. 2007 Jul;64(14):1793-800. Review.

PMID:
17514354
31.

Evolution of the iron-responsive element.

Piccinelli P, Samuelsson T.

RNA. 2007 Jul;13(7):952-66. Epub 2007 May 18.

32.

Cell specific internal translation efficiency of Epstein-Barr virus present in solid organ transplant patients.

Isaksson A, Berggren M, Ekeland-Sjöberg K, Samuelsson T, Ricksten A.

J Med Virol. 2007 May;79(5):573-81.

PMID:
17385682
33.

Glomerulus-specific mRNA transcripts and proteins identified through kidney expressed sequence tag database analysis.

He L, Sun Y, Patrakka J, Mostad P, Norlin J, Xiao Z, Andrae J, Tryggvason K, Samuelsson T, Betsholtz C, Takemoto M.

Kidney Int. 2007 May;71(9):889-900. Epub 2007 Feb 28.

34.

Inventory and analysis of the protein subunits of the ribonucleases P and MRP provides further evidence of homology between the yeast and human enzymes.

Rosenblad MA, López MD, Piccinelli P, Samuelsson T.

Nucleic Acids Res. 2006;34(18):5145-56. Epub 2006 Sep 22.

36.

Large-scale identification of genes implicated in kidney glomerulus development and function.

Takemoto M, He L, Norlin J, Patrakka J, Xiao Z, Petrova T, Bondjers C, Asp J, Wallgard E, Sun Y, Samuelsson T, Mostad P, Lundin S, Miura N, Sado Y, Alitalo K, Quaggin SE, Tryggvason K, Betsholtz C.

EMBO J. 2006 Mar 8;25(5):1160-74. Epub 2006 Feb 23.

37.

The tmRDB and SRPDB resources.

Andersen ES, Rosenblad MA, Larsen N, Westergaard JC, Burks J, Wower IK, Wower J, Gorodkin J, Samuelsson T, Zwieb C.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D163-8.

38.

Conformational variability of the GTPase domain of the signal recognition particle receptor FtsY.

Gariani T, Samuelsson T, Sauer-Eriksson AE.

J Struct Biol. 2006 Jan;153(1):85-96. Epub 2005 Nov 30.

PMID:
16343944
39.

A family of putative transcription termination factors shared amongst metazoans and plants.

Linder T, Park CB, Asin-Cayuela J, Pellegrini M, Larsson NG, Falkenberg M, Samuelsson T, Gustafsson CM.

Curr Genet. 2005 Oct;48(4):265-9. Epub 2005 Nov 4.

PMID:
16193327
40.

Identification and analysis of ribonuclease P and MRP RNA in a broad range of eukaryotes.

Piccinelli P, Rosenblad MA, Samuelsson T.

Nucleic Acids Res. 2005 Aug 8;33(14):4485-95. Print 2005.

41.

Neural cell adhesion molecule-deficient beta-cell tumorigenesis results in diminished extracellular matrix molecule expression and tumour cell-matrix adhesion.

Håkansson J, Xian X, He L, Ståhlberg A, Nelander S, Samuelsson T, Kubista M, Semb H.

Tumour Biol. 2005 Mar-Apr;26(2):103-12.

PMID:
15897690
42.

A nomenclature for all signal recognition particle RNAs.

Zwieb C, van Nues RW, Rosenblad MA, Brown JD, Samuelsson T.

RNA. 2005 Jan;11(1):7-13.

43.

Identification of chloroplast signal recognition particle RNA genes.

Rosenblad MA, Samuelsson T.

Plant Cell Physiol. 2004 Nov;45(11):1633-9.

PMID:
15574839
44.

Bioinformatic identification of polymerizing and transmembrane mucins in the puffer fish Fugu rubripes.

Lang T, Alexandersson M, Hansson GC, Samuelsson T.

Glycobiology. 2004 Jun;14(6):521-7. Epub 2004 Mar 24.

PMID:
15044386
45.
46.

SRPDB: Signal Recognition Particle Database.

Rosenblad MA, Gorodkin J, Knudsen B, Zwieb C, Samuelsson T.

Nucleic Acids Res. 2003 Jan 1;31(1):363-4.

47.

Prediction of signal recognition particle RNA genes.

Regalia M, Rosenblad MA, Samuelsson T.

Nucleic Acids Res. 2002 Aug 1;30(15):3368-77.

48.

Analysis of Schizosaccharomyces pombe mediator reveals a set of essential subunits conserved between yeast and metazoan cells.

Spåhr H, Samuelsen CO, Baraznenok V, Ernest I, Huylebroeck D, Remacle JE, Samuelsson T, Kieselbach T, Holmberg S, Gustafsson CM.

Proc Natl Acad Sci U S A. 2001 Oct 9;98(21):11985-90. Epub 2001 Sep 25.

49.

YidC/Oxa1p/Alb3: evolutionarily conserved mediators of membrane protein assembly.

Luirink J, Samuelsson T, de Gier JW.

FEBS Lett. 2001 Jul 13;501(1):1-5. Review.

50.

Mediator--a universal complex in transcriptional regulation.

Gustafsson CM, Samuelsson T.

Mol Microbiol. 2001 Jul;41(1):1-8. Review.

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