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Spatial regulation of alpha-galactosidase activity and its influence on raffinose family oligosaccharides during seed maturation and germination in Cicer arietinum.

Arunraj R, Skori L, Kumar A, Hickerson NMN, Shoma N, M V, Samuel MA.

Plant Signal Behav. 2020 Jan 6:1709707. doi: 10.1080/15592324.2019.1709707. [Epub ahead of print]


Microglia in the developing retina.

Li F, Jiang D, Samuel MA.

Neural Dev. 2019 Dec 30;14(1):12. doi: 10.1186/s13064-019-0137-x. Review.


Spatiotemporal gene expression patterns reveal molecular relatedness between retinal laminae.

Jiang D, Burger CA, Casasent AK, Albrecht NE, Li F, Samuel MA.

J Comp Neurol. 2019 Oct 14. doi: 10.1002/cne.24784. [Epub ahead of print]


Becoming a Principal Investigator: Designing and Navigating Your Academic Adventure.

Greer PL, Samuel MA.

Neuron. 2019 Sep 25;103(6):959-963. doi: 10.1016/j.neuron.2019.08.023.


Genetic manipulation of ABI3 confers frost-tolerant seed degreening in canola.

Perkins M, Skori L, Hickerson NMN, Jamshed M, Samuel MA.

Plant Biotechnol J. 2019 Aug 29. doi: 10.1111/pbi.13242. [Epub ahead of print] No abstract available.


Progressive myoclonic epilepsy-associated gene Kctd7 regulates retinal neurovascular patterning and function.

Alevy J, Burger CA, Albrecht NE, Jiang D, Samuel MA.

Neurochem Int. 2019 Oct;129:104486. doi: 10.1016/j.neuint.2019.104486. Epub 2019 Jun 6.


A Flower-Specific Phospholipase D Is a Stigmatic Compatibility Factor Targeted by the Self-Incompatibility Response in Brassica napus.

Scandola S, Samuel MA.

Curr Biol. 2019 Feb 4;29(3):506-512.e4. doi: 10.1016/j.cub.2018.12.037. Epub 2019 Jan 17.


Nucleus- and plastid-targeted annexin 5 promotes reproductive development in Arabidopsis and is essential for pollen and embryo formation.

Lichocka M, Rymaszewski W, Morgiewicz K, Barymow-Filoniuk I, Chlebowski A, Sobczak M, Samuel MA, Schmelzer E, Krzymowska M, Hennig J.

BMC Plant Biol. 2018 Sep 6;18(1):183. doi: 10.1186/s12870-018-1405-3.


Rapid and Integrative Discovery of Retina Regulatory Molecules.

Albrecht NE, Alevy J, Jiang D, Burger CA, Liu BI, Li F, Wang J, Kim SY, Hsu CW, Kalaga S, Udensi U, Asomugha C, Bohat R, Gaspero A, Justice MJ, Westenskow PD, Yamamoto S, Seavitt JR, Beaudet AL, Dickinson ME, Samuel MA.

Cell Rep. 2018 Aug 28;24(9):2506-2519. doi: 10.1016/j.celrep.2018.07.090.


Temporal regulation of two cytosolic phosphoglucomutases during stigma development in ornamental kale (Brassica oleracea var. acephala).

Li X, Abhinandan K, Zhang T, Wei D, Li Y, Lan X, Samuel MA.

Plant Signal Behav. 2018;13(5):e1467698. doi: 10.1080/15592324.2018.1467698. Epub 2018 Jun 26.


Abiotic Stress Signaling in Wheat - An Inclusive Overview of Hormonal Interactions During Abiotic Stress Responses in Wheat.

Abhinandan K, Skori L, Stanic M, Hickerson NMN, Jamshed M, Samuel MA.

Front Plant Sci. 2018 Jun 11;9:734. doi: 10.3389/fpls.2018.00734. eCollection 2018. Review.


Role for Wnt Signaling in Retinal Neuropil Development: Analysis via RNA-Seq and In Vivo Somatic CRISPR Mutagenesis.

Sarin S, Zuniga-Sanchez E, Kurmangaliyev YZ, Cousins H, Patel M, Hernandez J, Zhang KX, Samuel MA, Morey M, Sanes JR, Zipursky SL.

Neuron. 2018 Apr 4;98(1):109-126.e8. doi: 10.1016/j.neuron.2018.03.004. Epub 2018 Mar 22.


Farnesylation-mediated subcellular localization is required for CYP85A2 function.

Jamshed M, Liang S, M N Hickerson N, Samuel MA.

Plant Signal Behav. 2017 Oct 3;12(10):e1382795. doi: 10.1080/15592324.2017.1382795.


Flavonoids and ROS Play Opposing Roles in Mediating Pollination in Ornamental Kale (Brassica oleracea var. acephala).

Lan X, Yang J, Abhinandan K, Nie Y, Li X, Li Y, Samuel MA.

Mol Plant. 2017 Oct 9;10(10):1361-1364. doi: 10.1016/j.molp.2017.08.002. Epub 2017 Aug 18. No abstract available.


Glyoxalase Goes Green: The Expanding Roles of Glyoxalase in Plants.

Sankaranarayanan S, Jamshed M, Kumar A, Skori L, Scandola S, Wang T, Spiegel D, Samuel MA.

Int J Mol Sci. 2017 Apr 24;18(4). pii: E898. doi: 10.3390/ijms18040898. Review.


Activation of Mitochondrial Protein Phosphatase SLP2 by MIA40 Regulates Seed Germination.

Uhrig RG, Labandera AM, Tang LY, Sieben NA, Goudreault M, Yeung E, Gingras AC, Samuel MA, Moorhead GB.

Plant Physiol. 2017 Feb;173(2):956-969. doi: 10.1104/pp.16.01641. Epub 2016 Dec 6.


Farnesylation mediates brassinosteroid biosynthesis to regulate abscisic acid responses.

Northey JG, Liang S, Jamshed M, Deb S, Foo E, Reid JB, McCourt P, Samuel MA.

Nat Plants. 2016 Jul 25;2:16114. doi: 10.1038/nplants.2016.114.


Identification of detoxification pathways in plants that are regulated in response to treatment with organic compounds isolated from oil sands process-affected water.

Widdup EE, Chatfield-Reed K, Henry D, Chua G, Samuel MA, Muench DG.

Chemosphere. 2015 Nov;139:47-53. doi: 10.1016/j.chemosphere.2015.05.048. Epub 2015 Jun 5.


A proposed role for selective autophagy in regulating auxin-dependent lateral root development under phosphate starvation in Arabidopsis.

Sankaranarayanan S, Samuel MA.

Plant Signal Behav. 2015;10(3):e989749. doi: 10.4161/15592324.2014.989749.


Degradation of glyoxalase I in Brassica napus stigma leads to self-incompatibility response.

Sankaranarayanan S, Jamshed M, Samuel MA.

Nat Plants. 2015 Nov 30;1:15185. doi: 10.1038/nplants.2015.185.


The ARC1 E3 ligase promotes a strong and stable self-incompatibility response in Arabidopsis species: response to the Nasrallah and Nasrallah commentary.

Goring DR, Indriolo E, Samuel MA.

Plant Cell. 2014 Oct;26(10):3842-6. doi: 10.1105/tpc.114.131243. Epub 2014 Oct 21.


LKB1 and AMPK regulate synaptic remodeling in old age.

Samuel MA, Voinescu PE, Lilley BN, de Cabo R, Foretz M, Viollet B, Pawlyk B, Sandberg MA, Vavvas DG, Sanes JR.

Nat Neurosci. 2014 Sep;17(9):1190-7. doi: 10.1038/nn.3772. Epub 2014 Aug 3.


High humidity partially rescues the Arabidopsis thaliana exo70A1 stigmatic defect for accepting compatible pollen.

Safavian D, Jamshed M, Sankaranarayanan S, Indriolo E, Samuel MA, Goring DR.

Plant Reprod. 2014 Sep;27(3):121-7. doi: 10.1007/s00497-014-0245-z. Epub 2014 Jun 29.


Proteomics approaches advance our understanding of plant self-incompatibility response.

Sankaranarayanan S, Jamshed M, Samuel MA.

J Proteome Res. 2013 Nov 1;12(11):4717-26. doi: 10.1021/pr400716r. Epub 2013 Oct 7. Review.


ABI3 controls embryo degreening through Mendel's I locus.

Delmas F, Sankaranarayanan S, Deb S, Widdup E, Bournonville C, Bollier N, Northey JG, McCourt P, Samuel MA.

Proc Natl Acad Sci U S A. 2013 Oct 1;110(40):E3888-94. doi: 10.1073/pnas.1308114110. Epub 2013 Sep 16.


Crystal structure and biochemical analyses reveal that the Arabidopsis triphosphate tunnel metalloenzyme AtTTM3 is a tripolyphosphatase involved in root development.

Moeder W, Garcia-Petit C, Ung H, Fucile G, Samuel MA, Christendat D, Yoshioka K.

Plant J. 2013 Nov;76(4):615-26. doi: 10.1111/tpj.12325. Epub 2013 Oct 17.


The effect of oil sands process-affected water and naphthenic acids on the germination and development of Arabidopsis.

Leishman C, Widdup EE, Quesnel DM, Chua G, Gieg LM, Samuel MA, Muench DG.

Chemosphere. 2013 Sep;93(2):380-7. doi: 10.1016/j.chemosphere.2013.04.101. Epub 2013 Jun 6.


Nucleocytoplasmic partitioning of tobacco N receptor is modulated by SGT1.

Hoser R, Zurczak M, Lichocka M, Zuzga S, Dadlez M, Samuel MA, Ellis BE, Stuttmann J, Parker JE, Hennig J, Krzymowska M.

New Phytol. 2013 Oct;200(1):158-71. doi: 10.1111/nph.12347. Epub 2013 Jun 3.


Deciphering the stigmatic transcriptional landscape of compatible and self-incompatible Pollinations in Brassica napus reveals a rapid stigma senescence response following compatible pollination.

Sankaranarayanan S, Jamshed M, Deb S, Chatfield-Reed K, Kwon EJ, Chua G, Samuel MA.

Mol Plant. 2013 Nov;6(6):1988-91. doi: 10.1093/mp/sst066. Epub 2013 Apr 19. No abstract available.


Differential replication of pathogenic and nonpathogenic strains of West Nile virus within astrocytes.

Hussmann KL, Samuel MA, Kim KS, Diamond MS, Fredericksen BL.

J Virol. 2013 Mar;87(5):2814-22. doi: 10.1128/JVI.02577-12. Epub 2012 Dec 26.


Agrin and synaptic laminin are required to maintain adult neuromuscular junctions.

Samuel MA, Valdez G, Tapia JC, Lichtman JW, Sanes JR.

PLoS One. 2012;7(10):e46663. doi: 10.1371/journal.pone.0046663. Epub 2012 Oct 3.


Stem cell therapy for retinal disease.

Tibbetts MD, Samuel MA, Chang TS, Ho AC.

Curr Opin Ophthalmol. 2012 May;23(3):226-34. doi: 10.1097/ICU.0b013e328352407d. Review.


Age-related alterations in neurons of the mouse retina.

Samuel MA, Zhang Y, Meister M, Sanes JR.

J Neurosci. 2011 Nov 2;31(44):16033-44. doi: 10.1523/JNEUROSCI.3580-11.2011.


Proteomic analysis of Brassica stigmatic proteins following the self-incompatibility reaction reveals a role for microtubule dynamics during pollen responses.

Samuel MA, Tang W, Jamshed M, Northey J, Patel D, Smith D, Siu KW, Muench DG, Wang ZY, Goring DR.

Mol Cell Proteomics. 2011 Dec;10(12):M111.011338. doi: 10.1074/mcp.M111.011338. Epub 2011 Sep 1.


Six RNA viruses and forty-one hosts: viral small RNAs and modulation of small RNA repertoires in vertebrate and invertebrate systems.

Parameswaran P, Sklan E, Wilkins C, Burgon T, Samuel MA, Lu R, Ansel KM, Heissmeyer V, Einav S, Jackson W, Doukas T, Paranjape S, Polacek C, dos Santos FB, Jalili R, Babrzadeh F, Gharizadeh B, Grimm D, Kay M, Koike S, Sarnow P, Ronaghi M, Ding SW, Harris E, Chow M, Diamond MS, Kirkegaard K, Glenn JS, Fire AZ.

PLoS Pathog. 2010 Feb 12;6(2):e1000764. doi: 10.1371/journal.ppat.1000764.


Quantitative proteomics identifies oxidant-induced, AtMPK6-dependent changes in Arabidopsis thaliana protein profiles.

Miles GP, Samuel MA, Ranish JA, Donohoe SM, Sperrazzo GM, Ellis BE.

Plant Signal Behav. 2009 Jun;4(6):497-505. Epub 2009 Jun 17.


Cellular pathways regulating responses to compatible and self-incompatible pollen in Brassica and Arabidopsis stigmas intersect at Exo70A1, a putative component of the exocyst complex.

Samuel MA, Chong YT, Haasen KE, Aldea-Brydges MG, Stone SL, Goring DR.

Plant Cell. 2009 Sep;21(9):2655-71. doi: 10.1105/tpc.109.069740. Epub 2009 Sep 29.


The immune adaptor molecule SARM modulates tumor necrosis factor alpha production and microglia activation in the brainstem and restricts West Nile Virus pathogenesis.

Szretter KJ, Samuel MA, Gilfillan S, Fuchs A, Colonna M, Diamond MS.

J Virol. 2009 Sep;83(18):9329-38. doi: 10.1128/JVI.00836-09. Epub 2009 Jul 8.


The host immunologic response to West Nile encephalitis virus.

Diamond MS, Mehlhop E, Oliphant T, Samuel MA.

Front Biosci (Landmark Ed). 2009 Jan 1;14:3024-34. Review.


Toll-like receptor 3 has a protective role against West Nile virus infection.

Daffis S, Samuel MA, Suthar MS, Gale M Jr, Diamond MS.

J Virol. 2008 Nov;82(21):10349-58. doi: 10.1128/JVI.00935-08. Epub 2008 Aug 20.


Interferon regulatory factor IRF-7 induces the antiviral alpha interferon response and protects against lethal West Nile virus infection.

Daffis S, Samuel MA, Suthar MS, Keller BC, Gale M Jr, Diamond MS.

J Virol. 2008 Sep;82(17):8465-75. doi: 10.1128/JVI.00918-08. Epub 2008 Jun 18.


Interactions between the S-domain receptor kinases and AtPUB-ARM E3 ubiquitin ligases suggest a conserved signaling pathway in Arabidopsis.

Samuel MA, Mudgil Y, Salt JN, Delmas F, Ramachandran S, Chilelli A, Goring DR.

Plant Physiol. 2008 Aug;147(4):2084-95. doi: 10.1104/pp.108.123380. Epub 2008 Jun 13.


Combination intravitreal bevacizumab/panretinal photocoagulation versus panretinal photocoagulation alone in the treatment of neovascular glaucoma.

Ehlers JP, Spirn MJ, Lam A, Sivalingam A, Samuel MA, Tasman W.

Retina. 2008 May;28(5):696-702. doi: 10.1097/IAE.0b013e3181679c0b.


Surviving the passage: Non-canonical stromal targeting of an Arabidopsis mitogen-activated protein kinase kinase.

Samuel MA, Chaal BK, Lampard G, Green BR, Ellis BE.

Plant Signal Behav. 2008 Jan;3(1):6-12.


Retinoblastoma presenting as Coats' disease.

Lam HD, Samuel MA, Rao NA, Murphree AL.

Eye (Lond). 2008 Sep;22(9):1196-7. Epub 2007 Nov 30. No abstract available.


Intravitreal bevacizumab (avastin) in central retinal vein occlusion.

Hsu J, Kaiser RS, Sivalingam A, Abraham P, Fineman MS, Samuel MA, Vander JF, Regillo CD, Ho AC.

Retina. 2007 Oct;27(8):1013-9.


Axonal transport mediates West Nile virus entry into the central nervous system and induces acute flaccid paralysis.

Samuel MA, Wang H, Siddharthan V, Morrey JD, Diamond MS.

Proc Natl Acad Sci U S A. 2007 Oct 23;104(43):17140-5. Epub 2007 Oct 15.

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