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Items: 1 to 50 of 168

1.

Protein components of water extracts from fruiting bodies of the reishi mushroom Ganoderma lucidum contribute to the production of functional molecules.

Kumakura K, Hori C, Matsuoka H, Igarashi K, Samejima M.

J Sci Food Agric. 2019 Jan 30;99(2):529-535. doi: 10.1002/jsfa.9211. Epub 2018 Aug 27.

PMID:
29931755
2.

Structural and thermodynamic insights into β-1,2-glucooligosaccharide capture by a solute-binding protein in Listeria innocua.

Abe K, Sunagawa N, Terada T, Takahashi Y, Arakawa T, Igarashi K, Samejima M, Nakai H, Taguchi H, Nakajima M, Fushinobu S.

J Biol Chem. 2018 Jun 8;293(23):8812-8828. doi: 10.1074/jbc.RA117.001536. Epub 2018 Apr 20.

PMID:
29678880
3.

Interdomain flip-flop motion visualized in flavocytochrome cellobiose dehydrogenase using high-speed atomic force microscopy during catalysis.

Harada H, Onoda A, Uchihashi T, Watanabe H, Sunagawa N, Samejima M, Igarashi K, Hayashi T.

Chem Sci. 2017 Sep 1;8(9):6561-6565. doi: 10.1039/c7sc01672g. Epub 2017 Aug 3.

4.

Crystal Structure and Substrate Specificity Modification of Acetyl Xylan Esterase from Aspergillus luchuensis.

Komiya D, Hori A, Ishida T, Igarashi K, Samejima M, Koseki T, Fushinobu S.

Appl Environ Microbiol. 2017 Sep 29;83(20). pii: e01251-17. doi: 10.1128/AEM.01251-17. Print 2017 Oct 15.

5.

Crystal structure of a family 6 cellobiohydrolase from the basidiomycete Phanerochaete chrysosporium.

Tachioka M, Nakamura A, Ishida T, Igarashi K, Samejima M.

Acta Crystallogr F Struct Biol Commun. 2017 Jul 1;73(Pt 7):398-403. doi: 10.1107/S2053230X17008093. Epub 2017 Jun 17.

6.

Population Genetics of Identifiler System in Malaysia.

Nakamura Y, Samejima M, Minaguchi K, Nambiar P.

Bull Tokyo Dent Coll. 2016;57(4):233-239. doi: 10.2209/tdcpublication.2016-1400.

7.

Development of simple random mutagenesis protocol for the protein expression system in Pichia pastoris.

Tachioka M, Sugimoto N, Nakamura A, Sunagawa N, Ishida T, Uchiyama T, Igarashi K, Samejima M.

Biotechnol Biofuels. 2016 Sep 19;9:199. doi: 10.1186/s13068-016-0613-z. eCollection 2016.

8.

Single-molecule Imaging Analysis of Binding, Processive Movement, and Dissociation of Cellobiohydrolase Trichoderma reesei Cel6A and Its Domains on Crystalline Cellulose.

Nakamura A, Tasaki T, Ishiwata D, Yamamoto M, Okuni Y, Visootsat A, Maximilien M, Noji H, Uchiyama T, Samejima M, Igarashi K, Iino R.

J Biol Chem. 2016 Oct 21;291(43):22404-22413. Epub 2016 Sep 8.

9.

The use of neutron scattering to determine the functional structure of glycoside hydrolase.

Nakamura A, Ishida T, Samejima M, Igarashi K.

Curr Opin Struct Biol. 2016 Oct;40:54-61. doi: 10.1016/j.sbi.2016.07.014. Epub 2016 Aug 3. Review.

PMID:
27494120
10.

pH-dependent electron transfer reaction and direct bioelectrocatalysis of the quinohemoprotein pyranose dehydrogenase.

Takeda K, Matsumura H, Ishida T, Yoshida M, Igarashi K, Samejima M, Ohno H, Nakamura N.

Biochem Biophys Res Commun. 2016 Aug 26;477(3):369-73. doi: 10.1016/j.bbrc.2016.06.096. Epub 2016 Jun 23.

PMID:
27338639
11.

Salivary melatonin levels and sleep-wake rhythms in pregnant women with hypertensive and glucose metabolic disorders: A prospective analysis.

Shimada M, Seki H, Samejima M, Hayase M, Shirai F.

Biosci Trends. 2016 Feb;10(1):34-41. doi: 10.5582/bst.2015.01123. Epub 2016 Feb 6.

12.

"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography.

Nakamura A, Ishida T, Kusaka K, Yamada T, Fushinobu S, Tanaka I, Kaneko S, Ohta K, Tanaka H, Inaka K, Higuchi Y, Niimura N, Samejima M, Igarashi K.

Sci Adv. 2015 Aug 21;1(7):e1500263. doi: 10.1126/sciadv.1500263. eCollection 2015 Aug.

13.

Characterization of a novel PQQ-dependent quinohemoprotein pyranose dehydrogenase from Coprinopsis cinerea classified into auxiliary activities family 12 in carbohydrate-active enzymes.

Takeda K, Matsumura H, Ishida T, Samejima M, Ohno H, Yoshida M, Igarashi K, Nakamura N.

PLoS One. 2015 Feb 13;10(2):e0115722. doi: 10.1371/journal.pone.0115722. eCollection 2015.

14.

A novel pyrroloquinoline quinone-dependent 2-keto-D-glucose dehydrogenase from Pseudomonas aureofaciens.

Umezawa K, Takeda K, Ishida T, Sunagawa N, Makabe A, Isobe K, Koba K, Ohno H, Samejima M, Nakamura N, Igarashi K, Yoshida M.

J Bacteriol. 2015 Apr;197(8):1322-9. doi: 10.1128/JB.02376-14. Epub 2015 Feb 2.

15.

Analysis of the Phlebiopsis gigantea genome, transcriptome and secretome provides insight into its pioneer colonization strategies of wood.

Hori C, Ishida T, Igarashi K, Samejima M, Suzuki H, Master E, Ferreira P, Ruiz-Dueñas FJ, Held B, Canessa P, Larrondo LF, Schmoll M, Druzhinina IS, Kubicek CP, Gaskell JA, Kersten P, St John F, Glasner J, Sabat G, Splinter BonDurant S, Syed K, Yadav J, Mgbeahuruike AC, Kovalchuk A, Asiegbu FO, Lackner G, Hoffmeister D, Rencoret J, Gutiérrez A, Sun H, Lindquist E, Barry K, Riley R, Grigoriev IV, Henrissat B, Kües U, Berka RM, Martínez AT, Covert SF, Blanchette RA, Cullen D.

PLoS Genet. 2014 Dec 4;10(12):e1004759. doi: 10.1371/journal.pgen.1004759. eCollection 2014 Dec.

16.

Effect of amines as activators on the alcohol-oxidizing activity of pyrroloquinoline quinone-dependent quinoprotein alcohol dehydrogenase.

Takeda K, Ishida T, Igarashi K, Samejima M, Nakamura N, Ohno H.

Biosci Biotechnol Biochem. 2014;78(7):1195-8. doi: 10.1080/09168451.2014.917265. Epub 2014 May 28.

PMID:
25229857
17.

The GH26 β-mannanase RsMan26H from a symbiotic protist of the termite Reticulitermes speratus is an endo-processive mannobiohydrolase: heterologous expression and characterization.

Tsukagoshi H, Nakamura A, Ishida T, Otagiri M, Moriya S, Samejima M, Igarashi K, Kitamoto K, Arioka M.

Biochem Biophys Res Commun. 2014 Sep 26;452(3):520-5. doi: 10.1016/j.bbrc.2014.08.103. Epub 2014 Aug 27.

PMID:
25173929
18.

Discovery of a eukaryotic pyrroloquinoline quinone-dependent oxidoreductase belonging to a new auxiliary activity family in the database of carbohydrate-active enzymes.

Matsumura H, Umezawa K, Takeda K, Sugimoto N, Ishida T, Samejima M, Ohno H, Yoshida M, Igarashi K, Nakamura N.

PLoS One. 2014 Aug 14;9(8):e104851. doi: 10.1371/journal.pone.0104851. eCollection 2014.

19.

Crystal structure of a feruloyl esterase belonging to the tannase family: a disulfide bond near a catalytic triad.

Suzuki K, Hori A, Kawamoto K, Thangudu RR, Ishida T, Igarashi K, Samejima M, Yamada C, Arakawa T, Wakagi T, Koseki T, Fushinobu S.

Proteins. 2014 Oct;82(10):2857-67. doi: 10.1002/prot.24649. Epub 2014 Aug 11.

PMID:
25066066
20.

Two-way traffic of glycoside hydrolase family 18 processive chitinases on crystalline chitin.

Igarashi K, Uchihashi T, Uchiyama T, Sugimoto H, Wada M, Suzuki K, Sakuda S, Ando T, Watanabe T, Samejima M.

Nat Commun. 2014 Jun 4;5:3975. doi: 10.1038/ncomms4975.

PMID:
24894873
21.

Single-molecule imaging analysis of elementary reaction steps of Trichoderma reesei cellobiohydrolase I (Cel7A) hydrolyzing crystalline cellulose Iα and IIII.

Shibafuji Y, Nakamura A, Uchihashi T, Sugimoto N, Fukuda S, Watanabe H, Samejima M, Ando T, Noji H, Koivula A, Igarashi K, Iino R.

J Biol Chem. 2014 May 16;289(20):14056-65. doi: 10.1074/jbc.M113.546085. Epub 2014 Apr 1.

22.

Trade-off between processivity and hydrolytic velocity of cellobiohydrolases at the surface of crystalline cellulose.

Nakamura A, Watanabe H, Ishida T, Uchihashi T, Wada M, Ando T, Igarashi K, Samejima M.

J Am Chem Soc. 2014 Mar 26;136(12):4584-92. doi: 10.1021/ja4119994. Epub 2014 Mar 14.

PMID:
24571226
23.

Structural and biochemical analyses of glycoside hydrolase family 26 β-mannanase from a symbiotic protist of the termite Reticulitermes speratus.

Tsukagoshi H, Nakamura A, Ishida T, Touhara KK, Otagiri M, Moriya S, Samejima M, Igarashi K, Fushinobu S, Kitamoto K, Arioka M.

J Biol Chem. 2014 Apr 11;289(15):10843-52. doi: 10.1074/jbc.M114.555383. Epub 2014 Feb 25.

24.

Temporal alterations in the secretome of the selective ligninolytic fungus Ceriporiopsis subvermispora during growth on aspen wood reveal this organism's strategy for degrading lignocellulose.

Hori C, Gaskell J, Igarashi K, Kersten P, Mozuch M, Samejima M, Cullen D.

Appl Environ Microbiol. 2014 Apr;80(7):2062-70. doi: 10.1128/AEM.03652-13. Epub 2014 Jan 17.

25.

The two-step electrochemical oxidation of alcohols using a novel recombinant PQQ alcohol dehydrogenase as a catalyst for a bioanode.

Takeda K, Matsumura H, Ishida T, Samejima M, Igarashi K, Nakamura N, Ohno H.

Bioelectrochemistry. 2013 Dec;94:75-8. doi: 10.1016/j.bioelechem.2013.08.001. Epub 2013 Aug 22.

PMID:
24036413
26.

Genomewide analysis of polysaccharides degrading enzymes in 11 white- and brown-rot Polyporales provides insight into mechanisms of wood decay.

Hori C, Gaskell J, Igarashi K, Samejima M, Hibbett D, Henrissat B, Cullen D.

Mycologia. 2013 Nov-Dec;105(6):1412-27. doi: 10.3852/13-072. Epub 2013 Aug 9.

PMID:
23935027
27.

The tryptophan residue at the active site tunnel entrance of Trichoderma reesei cellobiohydrolase Cel7A is important for initiation of degradation of crystalline cellulose.

Nakamura A, Tsukada T, Auer S, Furuta T, Wada M, Koivula A, Igarashi K, Samejima M.

J Biol Chem. 2013 May 10;288(19):13503-10. doi: 10.1074/jbc.M113.452623. Epub 2013 Mar 26.

28.

Crystal structure and computational characterization of the lytic polysaccharide monooxygenase GH61D from the Basidiomycota fungus Phanerochaete chrysosporium.

Wu M, Beckham GT, Larsson AM, Ishida T, Kim S, Payne CM, Himmel ME, Crowley MF, Horn SJ, Westereng B, Igarashi K, Samejima M, Ståhlberg J, Eijsink VG, Sandgren M.

J Biol Chem. 2013 May 3;288(18):12828-39. doi: 10.1074/jbc.M113.459396. Epub 2013 Mar 22.

29.

Multiplex PCR for 18 X-chromosomal STRs in Japanese population.

Nakamura Y, Samejima M, Tamaki K, Minaguchi K.

Leg Med (Tokyo). 2013 May;15(3):164-70. doi: 10.1016/j.legalmed.2012.10.006. Epub 2012 Dec 6.

PMID:
23218765
30.

Effect of deglycosylation of cellobiose dehydrogenases on the enhancement of direct electron transfer with electrodes.

Ortiz R, Matsumura H, Tasca F, Zahma K, Samejima M, Igarashi K, Ludwig R, Gorton L.

Anal Chem. 2012 Dec 4;84(23):10315-23. doi: 10.1021/ac3022899. Epub 2012 Nov 14.

PMID:
23106311
31.
32.

Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize.

Suzuki H, MacDonald J, Syed K, Salamov A, Hori C, Aerts A, Henrissat B, Wiebenga A, VanKuyk PA, Barry K, Lindquist E, LaButti K, Lapidus A, Lucas S, Coutinho P, Gong Y, Samejima M, Mahadevan R, Abou-Zaid M, de Vries RP, Igarashi K, Yadav JS, Grigoriev IV, Master ER.

BMC Genomics. 2012 Sep 2;13:444. doi: 10.1186/1471-2164-13-444.

33.

Direct electrochemistry of Phanerochaete chrysosporium cellobiose dehydrogenase covalently attached onto gold nanoparticle modified solid gold electrodes.

Matsumura H, Ortiz R, Ludwig R, Igarashi K, Samejima M, Gorton L.

Langmuir. 2012 Jul 24;28(29):10925-33. doi: 10.1021/la3018858. Epub 2012 Jul 16.

PMID:
22746277
34.

The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes.

Floudas D, Binder M, Riley R, Barry K, Blanchette RA, Henrissat B, Martínez AT, Otillar R, Spatafora JW, Yadav JS, Aerts A, Benoit I, Boyd A, Carlson A, Copeland A, Coutinho PM, de Vries RP, Ferreira P, Findley K, Foster B, Gaskell J, Glotzer D, Górecki P, Heitman J, Hesse C, Hori C, Igarashi K, Jurgens JA, Kallen N, Kersten P, Kohler A, Kües U, Kumar TK, Kuo A, LaButti K, Larrondo LF, Lindquist E, Ling A, Lombard V, Lucas S, Lundell T, Martin R, McLaughlin DJ, Morgenstern I, Morin E, Murat C, Nagy LG, Nolan M, Ohm RA, Patyshakuliyeva A, Rokas A, Ruiz-Dueñas FJ, Sabat G, Salamov A, Samejima M, Schmutz J, Slot JC, St John F, Stenlid J, Sun H, Sun S, Syed K, Tsang A, Wiebenga A, Young D, Pisabarro A, Eastwood DC, Martin F, Cullen D, Grigoriev IV, Hibbett DS.

Science. 2012 Jun 29;336(6089):1715-9. doi: 10.1126/science.1221748.

35.

Myxoinflammatory fibroblastic sarcoma of the finger: a case report.

Fukasawa K, Samejima M, Kobayashi K.

Hand Surg. 2012;17(2):263-6.

PMID:
22745097
36.

Visualization of cellobiohydrolase I from Trichoderma reesei moving on crystalline cellulose using high-speed atomic force microscopy.

Igarashi K, Uchihashi T, Koivula A, Wada M, Kimura S, Penttilä M, Ando T, Samejima M.

Methods Enzymol. 2012;510:169-82. doi: 10.1016/B978-0-12-415931-0.00009-4.

PMID:
22608726
37.

Genetic study of 12 X-STRs in Malay population living in and around Kuala Lumpur using Investigator Argus X-12 kit.

Samejima M, Nakamura Y, Nambiar P, Minaguchi K.

Int J Legal Med. 2012 Jul;126(4):677-83. doi: 10.1007/s00414-012-0705-7. Epub 2012 May 15.

PMID:
22584910
38.

Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis.

Fernandez-Fueyo E, Ruiz-Dueñas FJ, Ferreira P, Floudas D, Hibbett DS, Canessa P, Larrondo LF, James TY, Seelenfreund D, Lobos S, Polanco R, Tello M, Honda Y, Watanabe T, Watanabe T, Ryu JS, Kubicek CP, Schmoll M, Gaskell J, Hammel KE, St John FJ, Vanden Wymelenberg A, Sabat G, Splinter BonDurant S, Syed K, Yadav JS, Doddapaneni H, Subramanian V, Lavín JL, Oguiza JA, Perez G, Pisabarro AG, Ramirez L, Santoyo F, Master E, Coutinho PM, Henrissat B, Lombard V, Magnuson JK, Kües U, Hori C, Igarashi K, Samejima M, Held BW, Barry KW, LaButti KM, Lapidus A, Lindquist EA, Lucas SM, Riley R, Salamov AA, Hoffmeister D, Schwenk D, Hadar Y, Yarden O, de Vries RP, Wiebenga A, Stenlid J, Eastwood D, Grigoriev IV, Berka RM, Blanchette RA, Kersten P, Martinez AT, Vicuna R, Cullen D.

Proc Natl Acad Sci U S A. 2012 Apr 3;109(14):5458-63. doi: 10.1073/pnas.1119912109. Epub 2012 Mar 20. Erratum in: Proc Natl Acad Sci U S A. 2012 May 22;109(21):8352. San, Ryu Jae [corrected to Ryu, Jae San].

39.

Transcriptional response of the cellobiose dehydrogenase gene to cello- and xylooligosaccharides in the basidiomycete Phanerochaete chrysosporium.

Hori C, Suzuki H, Igarashi K, Samejima M.

Appl Environ Microbiol. 2012 May;78(10):3770-3. doi: 10.1128/AEM.00150-12. Epub 2012 Mar 9.

40.

Cellulose affinity purification of fusion proteins tagged with fungal family 1 cellulose-binding domain.

Sugimoto N, Igarashi K, Samejima M.

Protein Expr Purif. 2012 Apr;82(2):290-6. doi: 10.1016/j.pep.2012.01.007. Epub 2012 Jan 28.

PMID:
22305911
41.

The putative endoglucanase PcGH61D from Phanerochaete chrysosporium is a metal-dependent oxidative enzyme that cleaves cellulose.

Westereng B, Ishida T, Vaaje-Kolstad G, Wu M, Eijsink VG, Igarashi K, Samejima M, Ståhlberg J, Horn SJ, Sandgren M.

PLoS One. 2011;6(11):e27807. doi: 10.1371/journal.pone.0027807. Epub 2011 Nov 23.

42.

A novel combined thermometric and amperometric biosensor for lactose determination based on immobilised cellobiose dehydrogenase.

Yakovleva M, Buzas O, Matsumura H, Samejima M, Igarashi K, Larsson PO, Gorton L, Danielsson B.

Biosens Bioelectron. 2012 Jan 15;31(1):251-6. doi: 10.1016/j.bios.2011.10.027. Epub 2011 Oct 21.

PMID:
22078845
43.

Population genetic study of six closely linked groups of X-STRs in a Japanese population.

Samejima M, Nakamura Y, Minaguchi K.

Int J Legal Med. 2011 Nov;125(6):895-900. doi: 10.1007/s00414-011-0618-x. Epub 2011 Sep 15.

PMID:
21918845
44.

Traffic jams reduce hydrolytic efficiency of cellulase on cellulose surface.

Igarashi K, Uchihashi T, Koivula A, Wada M, Kimura S, Okamoto T, Penttilä M, Ando T, Samejima M.

Science. 2011 Sep 2;333(6047):1279-82. doi: 10.1126/science.1208386. Erratum in: Science. 2011 Oct 28;334(6055):453.

45.

Endo-beta-1,3-galactanase from winter mushroom Flammulina velutipes.

Kotake T, Hirata N, Degi Y, Ishiguro M, Kitazawa K, Takata R, Ichinose H, Kaneko S, Igarashi K, Samejima M, Tsumuraya Y.

J Biol Chem. 2011 Aug 5;286(31):27848-54. doi: 10.1074/jbc.M111.251736. Epub 2011 Jun 8.

46.

[Consideration of early rehabilitation in the treatment of post-cardiac arrest syndrome].

Kurihara M, Ogasawara S, Kadowaki A, Onizuka S, Samejima M.

Nihon Rinsho. 2011 Apr;69(4):653-7. Japanese.

PMID:
21591419
47.

Effects of xylan and starch on secretome of the basidiomycete Phanerochaete chrysosporium grown on cellulose.

Hori C, Igarashi K, Katayama A, Samejima M.

FEMS Microbiol Lett. 2011 Aug;321(1):14-23. doi: 10.1111/j.1574-6968.2011.02307.x. Epub 2011 Jun 2.

48.

Degradation of carbohydrate moieties of arabinogalactan-proteins by glycoside hydrolases from Neurospora crassa.

Takata R, Tokita K, Mori S, Shimoda R, Harada N, Ichinose H, Kaneko S, Igarashi K, Samejima M, Tsumuraya Y, Kotake T.

Carbohydr Res. 2010 Nov 22;345(17):2516-22. doi: 10.1016/j.carres.2010.09.006. Epub 2010 Sep 9.

PMID:
20932514
49.

Cellotriose and cellotetraose as inducers of the genes encoding cellobiohydrolases in the basidiomycete Phanerochaete chrysosporium.

Suzuki H, Igarashi K, Samejima M.

Appl Environ Microbiol. 2010 Sep;76(18):6164-70. doi: 10.1128/AEM.00724-10. Epub 2010 Jul 23.

50.

Crystal structure of a glycoside hydrolase family 6 enzyme, CcCel6C, a cellulase constitutively produced by Coprinopsis cinerea.

Liu Y, Yoshida M, Kurakata Y, Miyazaki T, Igarashi K, Samejima M, Fukuda K, Nishikawa A, Tonozuka T.

FEBS J. 2010 Mar;277(6):1532-42. doi: 10.1111/j.1742-4658.2010.07582.x. Epub 2010 Feb 10.

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