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Items: 45

1.

Strong temporal dynamics of QTL action on plant growth progression revealed through high-throughput phenotyping in canola.

Knoch D, Abbadi A, Grandke F, Meyer RC, Samans B, Werner CR, Snowdon RJ, Altmann T.

Plant Biotechnol J. 2019 May 24. doi: 10.1111/pbi.13171. [Epub ahead of print]

2.

Quantifying circulating Th17 cells by qPCR: potential as diagnostic biomarker for rheumatoid arthritis.

Burska AN, Thu A, Parmar R, Bzoma I, Samans B, Raschke E, Olek S, Conaghan PG, Emery P, Ponchel F.

Rheumatology (Oxford). 2019 May 12. pii: kez162. doi: 10.1093/rheumatology/kez162. [Epub ahead of print]

PMID:
31081041
3.

Inherited allelic variants and novel karyotype changes influence fertility and genome stability in Brassica allohexaploids.

Gaebelein R, Schiessl SV, Samans B, Batley J, Mason AS.

New Phytol. 2019 Jul;223(2):965-978. doi: 10.1111/nph.15804. Epub 2019 Apr 24.

PMID:
30887525
4.

Effect of breeding on nitrogen use efficiency-associated traits in oilseed rape.

Stahl A, Vollrath P, Samans B, Frisch M, Wittkop B, Snowdon RJ.

J Exp Bot. 2019 Mar 27;70(6):1969-1986. doi: 10.1093/jxb/erz044.

5.

Sorghum root-system classification in contrasting P environments reveals three main rooting types and root-architecture-related marker-trait associations.

Parra-Londono S, Kavka M, Samans B, Snowdon R, Wieckhorst S, Uptmoor R.

Ann Bot. 2018 Feb 12;121(2):267-280. doi: 10.1093/aob/mcx157.

6.

Surviving a Genome Collision: Genomic Signatures of Allopolyploidization in the Recent Crop Species Brassica napus.

Samans B, Chalhoub B, Snowdon RJ.

Plant Genome. 2017 Nov;10(3). doi: 10.3835/plantgenome2017.02.0013.

7.

Transcriptome dynamic of Arabidopsis roots infected with Phytophthora parasitica identifies VQ29, a gene induced during the penetration and involved in the restriction of infection.

Le Berre JY, Gourgues M, Samans B, Keller H, Panabières F, Attard A.

PLoS One. 2017 Dec 27;12(12):e0190341. doi: 10.1371/journal.pone.0190341. eCollection 2017.

8.

Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus.

Hurgobin B, Golicz AA, Bayer PE, Chan CK, Tirnaz S, Dolatabadian A, Schiessl SV, Samans B, Montenegro JD, Parkin IAP, Pires JC, Chalhoub B, King GJ, Snowdon R, Batley J, Edwards D.

Plant Biotechnol J. 2018 Jul;16(7):1265-1274. doi: 10.1111/pbi.12867. Epub 2018 Jan 10.

9.

Genetic dissection of early-season cold tolerance in sorghum: genome-wide association studies for seedling emergence and survival under field and controlled environment conditions.

Parra-Londono S, Fiedler K, Kavka M, Samans B, Wieckhorst S, Zacharias A, Uptmoor R.

Theor Appl Genet. 2018 Mar;131(3):581-595. doi: 10.1007/s00122-017-3021-2. Epub 2017 Nov 16.

PMID:
29147737
10.

Drought-Tolerant Brassica rapa Shows Rapid Expression of Gene Networks for General Stress Responses and Programmed Cell Death Under Simulated Drought Stress.

Guo YM, Samans B, Chen S, Kibret KB, Hatzig S, Turner NC, Nelson MN, Cowling WA, Snowdon RJ.

Plant Mol Biol Report. 2017;35(4):416-430. doi: 10.1007/s11105-017-1032-4. Epub 2017 May 22.

11.

Mapping of homoeologous chromosome exchanges influencing quantitative trait variation in Brassica napus.

Stein A, Coriton O, Rousseau-Gueutin M, Samans B, Schiessl SV, Obermeier C, Parkin IAP, Chèvre AM, Snowdon RJ.

Plant Biotechnol J. 2017 Nov;15(11):1478-1489. doi: 10.1111/pbi.12732. Epub 2017 Apr 27.

12.

Deletion of a Stay-Green Gene Associates with Adaptive Selection in Brassica napus.

Qian L, Voss-Fels K, Cui Y, Jan HU, Samans B, Obermeier C, Qian W, Snowdon RJ.

Mol Plant. 2016 Dec 5;9(12):1559-1569. doi: 10.1016/j.molp.2016.10.017. Epub 2016 Nov 4.

13.

gsrc: an R package for genome structure rearrangement calling.

Grandke F, Snowdon R, Samans B.

Bioinformatics. 2017 Feb 15;33(4):545-546. doi: 10.1093/bioinformatics/btw648.

PMID:
27797758
14.

Species-wide genome sequence and nucleotide polymorphisms from the model allopolyploid plant Brassica napus.

Schmutzer T, Samans B, Dyrszka E, Ulpinnis C, Weise S, Stengel D, Colmsee C, Lespinasse D, Micic Z, Abel S, Duchscherer P, Breuer F, Abbadi A, Leckband G, Snowdon R, Scholz U.

Sci Data. 2015 Dec 8;2:150072. doi: 10.1038/sdata.2015.72.

15.

Microspore culture reveals complex meiotic behaviour in a trigenomic Brassica hybrid.

Mason AS, Takahira J, Atri C, Samans B, Hayward A, Cowling WA, Batley J, Nelson MN.

BMC Plant Biol. 2015 Jul 8;15:173. doi: 10.1186/s12870-015-0555-9.

16.

Species- and genome-wide dissection of the shoot ionome in Brassica napus and its relationship to seedling development.

Bus A, Körber N, Parkin IA, Samans B, Snowdon RJ, Li J, Stich B.

Front Plant Sci. 2014 Sep 30;5:485. doi: 10.3389/fpls.2014.00485. eCollection 2014.

17.

Capturing sequence variation among flowering-time regulatory gene homologs in the allopolyploid crop species Brassica napus.

Schiessl S, Samans B, Hüttel B, Reinhard R, Snowdon RJ.

Front Plant Sci. 2014 Aug 25;5:404. doi: 10.3389/fpls.2014.00404. eCollection 2014.

18.

Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.

Chalhoub B, Denoeud F, Liu S, Parkin IA, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, Corréa M, Da Silva C, Just J, Falentin C, Koh CS, Le Clainche I, Bernard M, Bento P, Noel B, Labadie K, Alberti A, Charles M, Arnaud D, Guo H, Daviaud C, Alamery S, Jabbari K, Zhao M, Edger PP, Chelaifa H, Tack D, Lassalle G, Mestiri I, Schnel N, Le Paslier MC, Fan G, Renault V, Bayer PE, Golicz AA, Manoli S, Lee TH, Thi VH, Chalabi S, Hu Q, Fan C, Tollenaere R, Lu Y, Battail C, Shen J, Sidebottom CH, Wang X, Canaguier A, Chauveau A, Bérard A, Deniot G, Guan M, Liu Z, Sun F, Lim YP, Lyons E, Town CD, Bancroft I, Wang X, Meng J, Ma J, Pires JC, King GJ, Brunel D, Delourme R, Renard M, Aury JM, Adams KL, Batley J, Snowdon RJ, Tost J, Edwards D, Zhou Y, Hua W, Sharpe AG, Paterson AH, Guan C, Wincker P.

Science. 2014 Aug 22;345(6199):950-3. doi: 10.1126/science.1253435. Epub 2014 Aug 21.

19.

Uniformity of nucleosome preservation pattern in Mammalian sperm and its connection to repetitive DNA elements.

Samans B, Yang Y, Krebs S, Sarode GV, Blum H, Reichenbach M, Wolf E, Steger K, Dansranjavin T, Schagdarsurengin U.

Dev Cell. 2014 Jul 14;30(1):23-35. doi: 10.1016/j.devcel.2014.05.023. Epub 2014 Jul 3.

20.

N-Acyl-Homoserine Lactone Primes Plants for Cell Wall Reinforcement and Induces Resistance to Bacterial Pathogens via the Salicylic Acid/Oxylipin Pathway.

Schenk ST, Hernández-Reyes C, Samans B, Stein E, Neumann C, Schikora M, Reichelt M, Mithöfer A, Becker A, Kogel KH, Schikora A.

Plant Cell. 2014 Jun;26(6):2708-2723. Epub 2014 Jun 24.

21.

Scaffold-assisted cartilage tissue engineering using infant chondrocytes from human hip cartilage.

Kreuz PC, Gentili C, Samans B, Martinelli D, Krüger JP, Mittelmeier W, Endres M, Cancedda R, Kaps C.

Osteoarthritis Cartilage. 2013 Dec;21(12):1997-2005. doi: 10.1016/j.joca.2013.09.007. Epub 2013 Oct 2.

22.
23.

Prolonged generalized dystonia after chronic cerebellar application of kainic acid.

Alvarez-Fischer D, Grundmann M, Lu L, Samans B, Fritsch B, Möller JC, Schaefer MK, Hartmann A, Oertel WH, Bandmann O.

Brain Res. 2012 Jun 29;1464:82-8. doi: 10.1016/j.brainres.2012.05.007. Epub 2012 May 15.

PMID:
22595488
24.

Endophytic life strategies decoded by genome and transcriptome analyses of the mutualistic root symbiont Piriformospora indica.

Zuccaro A, Lahrmann U, Güldener U, Langen G, Pfiffi S, Biedenkopf D, Wong P, Samans B, Grimm C, Basiewicz M, Murat C, Martin F, Kogel KH.

PLoS Pathog. 2011 Oct;7(10):e1002290. doi: 10.1371/journal.ppat.1002290. Epub 2011 Oct 13.

25.

Barley leaf transcriptome and metabolite analysis reveals new aspects of compatibility and Piriformospora indica-mediated systemic induced resistance to powdery mildew.

Molitor A, Zajic D, Voll LM, Pons-K Hnemann J, Samans B, Kogel KH, Waller F.

Mol Plant Microbe Interact. 2011 Dec;24(12):1427-39. doi: 10.1094/MPMI-06-11-0177.

26.

The MK5/PRAK kinase and Myc form a negative feedback loop that is disrupted during colorectal tumorigenesis.

Kress TR, Cannell IG, Brenkman AB, Samans B, Gaestel M, Roepman P, Burgering BM, Bushell M, Rosenwald A, Eilers M.

Mol Cell. 2011 Feb 18;41(4):445-57. doi: 10.1016/j.molcel.2011.01.023.

27.

Common Motifs in the Response of Cereal Primary Metabolism to Fungal Pathogens are not Based on Similar Transcriptional Reprogramming.

Voll LM, Horst RJ, Voitsik AM, Zajic D, Samans B, Pons-Kühnemann J, Doehlemann G, Münch S, Wahl R, Molitor A, Hofmann J, Schmiedl A, Waller F, Deising HB, Kahmann R, Kämper J, Kogel KH, Sonnewald U.

Front Plant Sci. 2011 Aug 22;2:39. doi: 10.3389/fpls.2011.00039. eCollection 2011.

28.

TGFβ-dependent gene expression shows that senescence correlates with abortive differentiation along several lineages in Myc-induced lymphomas.

Müller J, Samans B, van Riggelen J, Fagà G, Peh K N R, Wei CL, Müller H, Amati B, Felsher D, Eilers M.

Cell Cycle. 2010 Dec 1;9(23):4622-6.

PMID:
21127397
29.

Gene expression analysis after receptor tyrosine kinase activation reveals new potential melanoma proteins.

Teutschbein J, Haydn JM, Samans B, Krause M, Eilers M, Schartl M, Meierjohann S.

BMC Cancer. 2010 Jul 21;10:386. doi: 10.1186/1471-2407-10-386.

30.

Microarray analysis reveals differential expression of benign and malignant pheochromocytoma.

Waldmann J, Fendrich V, Holler J, Buchholz M, Heinmöller E, Langer P, Ramaswamy A, Samans B, Walz MK, Rothmund M, Bartsch DK, Slater EP.

Endocr Relat Cancer. 2010 Jul 28;17(3):743-56. doi: 10.1677/ERC-09-0118. Print 2010 Sep.

PMID:
20562231
31.

DNA binding cooperativity of p53 modulates the decision between cell-cycle arrest and apoptosis.

Schlereth K, Beinoraviciute-Kellner R, Zeitlinger MK, Bretz AC, Sauer M, Charles JP, Vogiatzi F, Leich E, Samans B, Eilers M, Kisker C, Rosenwald A, Stiewe T.

Mol Cell. 2010 May 14;38(3):356-68. doi: 10.1016/j.molcel.2010.02.037.

32.

lin9 is required for mitosis and cell survival during early zebrafish development.

Kleinschmidt MA, Wagner TU, Liedtke D, Spahr S, Samans B, Gaubatz S.

J Biol Chem. 2009 May 8;284(19):13119-27. doi: 10.1074/jbc.M809635200. Epub 2009 Mar 11.

33.

p53 and p73 in suppression of Myc-driven lymphomagenesis.

Griesmann H, Schlereth K, Krause M, Samans B, Stiewe T.

Int J Cancer. 2009 Jan 15;124(2):502-6. doi: 10.1002/ijc.23978.

34.

The protein arginine methyltransferases CARM1 and PRMT1 cooperate in gene regulation.

Kleinschmidt MA, Streubel G, Samans B, Krause M, Bauer UM.

Nucleic Acids Res. 2008 Jun;36(10):3202-13. doi: 10.1093/nar/gkn166. Epub 2008 Apr 15.

35.

Cellular and mitochondrial remodeling upon defects in iron-sulfur protein biogenesis.

Hausmann A, Samans B, Lill R, Mühlenhoff U.

J Biol Chem. 2008 Mar 28;283(13):8318-30. doi: 10.1074/jbc.M705570200. Epub 2008 Jan 28.

36.

MYCN regulates oncogenic MicroRNAs in neuroblastoma.

Schulte JH, Horn S, Otto T, Samans B, Heukamp LC, Eilers UC, Krause M, Astrahantseff K, Klein-Hitpass L, Buettner R, Schramm A, Christiansen H, Eilers M, Eggert A, Berwanger B.

Int J Cancer. 2008 Feb 1;122(3):699-704.

37.

Candidate genes for the progression of malignant gliomas identified by microarray analysis.

Bozinov O, Köhler S, Samans B, Benes L, Miller D, Ritter M, Sure U, Bertalanffy H.

Neurosurg Rev. 2008 Jan;31(1):83-9; discussion 89-90. Epub 2007 Oct 5. Erratum in: Neurosurg Rev. 2008 Apr;31(2):247-8.

PMID:
17917751
38.

The human synMuv-like protein LIN-9 is required for transcription of G2/M genes and for entry into mitosis.

Osterloh L, von Eyss B, Schmit F, Rein L, Hübner D, Samans B, Hauser S, Gaubatz S.

EMBO J. 2007 Jan 10;26(1):144-57. Epub 2006 Dec 7.

39.

BMI1 is a target gene of E2F-1 and is strongly expressed in primary neuroblastomas.

Nowak K, Kerl K, Fehr D, Kramps C, Gessner C, Killmer K, Samans B, Berwanger B, Christiansen H, Lutz W.

Nucleic Acids Res. 2006 Mar 31;34(6):1745-54. Print 2006.

40.

Target genes of the WNT/beta-catenin pathway in Wilms tumors.

Zirn B, Samans B, Wittmann S, Pietsch T, Leuschner I, Graf N, Gessler M.

Genes Chromosomes Cancer. 2006 Jun;45(6):565-74.

PMID:
16575872
41.

Analysis by cDNA microarrays of gene expression patterns of human adrenocortical tumors.

Slater EP, Diehl SM, Langer P, Samans B, Ramaswamy A, Zielke A, Bartsch DK.

Eur J Endocrinol. 2006 Apr;154(4):587-98.

PMID:
16556722
42.

Myc regulates keratinocyte adhesion and differentiation via complex formation with Miz1.

Gebhardt A, Frye M, Herold S, Benitah SA, Braun K, Samans B, Watt FM, Elsässer HP, Eilers M.

J Cell Biol. 2006 Jan 2;172(1):139-49.

43.

Expression profiling of Wilms tumors reveals new candidate genes for different clinical parameters.

Zirn B, Hartmann O, Samans B, Krause M, Wittmann S, Mertens F, Graf N, Eilers M, Gessler M.

Int J Cancer. 2006 Apr 15;118(8):1954-62.

44.

All-trans retinoic acid treatment of Wilms tumor cells reverses expression of genes associated with high risk and relapse in vivo.

Zirn B, Samans B, Spangenberg C, Graf N, Eilers M, Gessler M.

Oncogene. 2005 Aug 4;24(33):5246-51.

PMID:
15897880
45.

Programmed cell death protein 4 suppresses CDK1/cdc2 via induction of p21(Waf1/Cip1).

Göke R, Barth P, Schmidt A, Samans B, Lankat-Buttgereit B.

Am J Physiol Cell Physiol. 2004 Dec;287(6):C1541-6. Epub 2004 Aug 18.

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