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Items: 11

1.

The population genomic basis of geographic differentiation in North American common ragweed (Ambrosia artemisiifolia L.).

Martin MD, Olsen MT, Samaniego JA, Zimmer EA, Gilbert MTP.

Ecol Evol. 2016 May 5;6(11):3760-3771. doi: 10.1002/ece3.2143. eCollection 2016 Jun.

2.

New insights on single-stranded versus double-stranded DNA library preparation for ancient DNA.

Wales N, Carøe C, Sandoval-Velasco M, Gamba C, Barnett R, Samaniego JA, Madrigal JR, Orlando L, Gilbert MT.

Biotechniques. 2015 Dec 1;59(6):368-71. doi: 10.2144/000114364. eCollection 2015 Dec.

3.

Viral meningitis epidemics and a single, recent, recombinant and anthroponotic origin of swine vesicular disease virus.

Bruhn CA, Nielsen SC, Samaniego JA, Wadsworth J, Knowles NJ, Gilbert MT.

Evol Med Public Health. 2015 Oct 27;2015(1):289-303. doi: 10.1093/emph/eov026.

4.

Genome-wide ancestry of 17th-century enslaved Africans from the Caribbean.

Schroeder H, Ávila-Arcos MC, Malaspinas AS, Poznik GD, Sandoval-Velasco M, Carpenter ML, Moreno-Mayar JV, Sikora M, Johnson PL, Allentoft ME, Samaniego JA, Haviser JB, Dee MW, Stafford TW Jr, Salas A, Orlando L, Willerslev E, Bustamante CD, Gilbert MT.

Proc Natl Acad Sci U S A. 2015 Mar 24;112(12):3669-73. doi: 10.1073/pnas.1421784112. Epub 2015 Mar 9.

5.

Mitochondrial genome sequences reveal evolutionary relationships of the Phytophthora 1c clade species.

Lassiter ES, Russ C, Nusbaum C, Zeng Q, Saville AC, Olarte RA, Carbone I, Hu CH, Seguin-Orlando A, Samaniego JA, Thorne JL, Ristaino JB.

Curr Genet. 2015 Nov;61(4):567-77. doi: 10.1007/s00294-015-0480-3. Epub 2015 Mar 10.

6.

The origin and evolution of maize in the Southwestern United States.

da Fonseca RR, Smith BD, Wales N, Cappellini E, Skoglund P, Fumagalli M, Samaniego JA, Carøe C, Ávila-Arcos MC, Hufnagel DE, Korneliussen TS, Vieira FG, Jakobsson M, Arriaza B, Willerslev E, Nielsen R, Hufford MB, Albrechtsen A, Ross-Ibarra J, Gilbert MT.

Nat Plants. 2015 Jan 8;1:14003. doi: 10.1038/nplants.2014.3.

PMID:
27246050
7.

Whole-genome analyses resolve early branches in the tree of life of modern birds.

Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella-Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MP, Prosdocimi F, Samaniego JA, Vargas Velazquez AM, Alfaro-Núñez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jønsson KA, Johnson W, Koepfli KP, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alström P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G.

Science. 2014 Dec 12;346(6215):1320-31. doi: 10.1126/science.1253451.

8.

Near-complete genome sequencing of swine vesicular disease virus using the Roche GS FLX sequencing platform.

Nielsen SC, Bruhn CA, Samaniego JA, Wadsworth J, Knowles NJ, Gilbert MT.

PLoS One. 2014 May 9;9(5):e97180. doi: 10.1371/journal.pone.0097180. eCollection 2014.

9.

Tracking niche variation over millennial timescales in sympatric killer whale lineages.

Foote AD, Newton J, Ávila-Arcos MC, Kampmann ML, Samaniego JA, Post K, Rosing-Asvid A, Sinding MH, Gilbert MT.

Proc Biol Sci. 2013 Aug 14;280(1768):20131481. doi: 10.1098/rspb.2013.1481. Print 2013 Oct 7.

10.

Reconstructing genome evolution in historic samples of the Irish potato famine pathogen.

Martin MD, Cappellini E, Samaniego JA, Zepeda ML, Campos PF, Seguin-Orlando A, Wales N, Orlando L, Ho SY, Dietrich FS, Mieczkowski PA, Heitman J, Willerslev E, Krogh A, Ristaino JB, Gilbert MT.

Nat Commun. 2013;4:2172. doi: 10.1038/ncomms3172.

11.

The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils.

Allentoft ME, Collins M, Harker D, Haile J, Oskam CL, Hale ML, Campos PF, Samaniego JA, Gilbert MT, Willerslev E, Zhang G, Scofield RP, Holdaway RN, Bunce M.

Proc Biol Sci. 2012 Dec 7;279(1748):4724-33. doi: 10.1098/rspb.2012.1745. Epub 2012 Oct 10.

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