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Black Raspberry Inhibits Oral Tumors in Mice Treated with the Tobacco Smoke Constituent Dibenzo(def,p)chrysene via Genetic and Epigenetic Alterations.

Chen KM, Sun YW, Kawasawa YI, Salzberg AC, Zhu J, Gowda K, Aliaga C, Amin S, Atkins H, El-Bayoumy K.

Cancer Prev Res (Phila). 2020 Jan 22. pii: canprevres.0496.2019. doi: 10.1158/1940-6207.CAPR-19-0496. [Epub ahead of print]


Impact of HFE variants and sex in lung cancer.

Lee SY, Walter V, Zhu J, Salzberg AC, Liu DJ, Connor JR.

PLoS One. 2019 Dec 19;14(12):e0226821. doi: 10.1371/journal.pone.0226821. eCollection 2019.


An Activating Mutation in ERK Causes Hyperplastic Tumors in a scribble Mutant Tissue in Drosophila.

Kushnir T, Bar-Cohen S, Mooshayef N, Lange R, Bar-Sinai A, Rozen H, Salzberg A, Engelberg D, Paroush Z.

Genetics. 2020 Jan;214(1):109-120. doi: 10.1534/genetics.119.302794. Epub 2019 Nov 18.


Antibiotics as chemical warfare across multiple taxonomic domains and trophic levels in brown food webs.

Lucas JM, Gora E, Salzberg A, Kaspari M.

Proc Biol Sci. 2019 Sep 25;286(1911):20191536. doi: 10.1098/rspb.2019.1536. Epub 2019 Sep 25.


Tissue-Specific Gene Expression during Productive Human Papillomavirus 16 Infection of Cervical, Foreskin, and Tonsil Epithelium.

Chatterjee S, Do Kang S, Alam S, Salzberg AC, Milici J, van der Burg SH, Freeman W, Meyers C.

J Virol. 2019 Aug 13;93(17). pii: e00915-19. doi: 10.1128/JVI.00915-19. Print 2019 Sep 1.


Selective elimination of cancer cells by the adenovirus E4orf4 protein in a Drosophila cancer model: a new paradigm for cancer therapy.

Rosen H, Sharf R, Pechkovsky A, Salzberg A, Kleinberger T.

Cell Death Dis. 2019 Jun 11;10(6):455. doi: 10.1038/s41419-019-1680-4.


A Change in ECM Composition Affects Sensory Organ Mechanics and Function.

Hassan A, Sapir L, Nitsan I, Greenblatt Ben-El RT, Halachmi N, Salzberg A, Tzlil S.

Cell Rep. 2019 May 21;27(8):2272-2280.e4. doi: 10.1016/j.celrep.2019.04.092.


O-GlcNAcylation alters the selection of mRNAs for translation and promotes 4E-BP1-dependent mitochondrial dysfunction in the retina.

Dierschke SK, Miller WP, Favate JS, Shah P, Imamura Kawasawa Y, Salzberg AC, Kimball SR, Jefferson LS, Dennis MD.

J Biol Chem. 2019 Apr 5;294(14):5508-5520. doi: 10.1074/jbc.RA119.007494. Epub 2019 Feb 7.


Accurate elimination of superfluous attachment cells is critical for the construction of functional multicellular proprioceptors in Drosophila.

Avetisyan A, Salzberg A.

Cell Death Differ. 2019 Oct;26(10):1895-1904. doi: 10.1038/s41418-018-0260-y. Epub 2019 Jan 8.


Effect of Productive Human Papillomavirus 16 Infection on Global Gene Expression in Cervical Epithelium.

Kang SD, Chatterjee S, Alam S, Salzberg AC, Milici J, van der Burg SH, Meyers C.

J Virol. 2018 Sep 26;92(20). pii: e01261-18. doi: 10.1128/JVI.01261-18. Print 2018 Oct 15.


Activity-Induced Regulation of Synaptic Strength through the Chromatin Reader L3mbtl1.

Mao W, Salzberg AC, Uchigashima M, Hasegawa Y, Hock H, Watanabe M, Akbarian S, Kawasawa YI, Futai K.

Cell Rep. 2018 Jun 12;23(11):3209-3222. doi: 10.1016/j.celrep.2018.05.028.


An RNAi Screen Identifies New Genes Required for Normal Morphogenesis of Larval Chordotonal Organs.

Hassan A, Timerman Y, Hamdan R, Sela N, Avetisyan A, Halachmi N, Salzberg A.

G3 (Bethesda). 2018 May 31;8(6):1871-1884. doi: 10.1534/g3.118.200218.


Hypomethylated Fgf3 is a potential biomarker for early detection of oral cancer in mice treated with the tobacco carcinogen dibenzo[def,p]chrysene.

Sun YW, Chen KM, Imamura Kawasawa Y, Salzberg AC, Cooper TK, Caruso C, Aliaga C, Zhu J, Gowda K, Amin S, El-Bayoumy K.

PLoS One. 2017 Oct 26;12(10):e0186873. doi: 10.1371/journal.pone.0186873. eCollection 2017.


Genome-wide profiling of differentially spliced mRNAs in human fetal cortical tissue exposed to alcohol.

Kawasawa YI, Mohammad S, Son AI, Morizono H, Basha A, Salzberg AC, Torii M, Hashimoto-Torii K.

Alcohol. 2017 Aug;62:1-9. doi: 10.1016/j.alcohol.2017.05.001. Epub 2017 May 4.


Ancestry-Adjusted Vitamin D Metabolite Concentrations in Association With Cytochrome P450 3A Polymorphisms.

Wilson RT, Masters LD, Barnholtz-Sloan JS, Salzberg AC, Hartman TJ.

Am J Epidemiol. 2018 Apr 1;187(4):754-766. doi: 10.1093/aje/kwx187.


Identification and prediction of alternative transcription start sites that generate rod photoreceptor-specific transcripts from ubiquitously expressed genes.

Popova EY, Salzberg AC, Yang C, Zhang SS, Barnstable CJ.

PLoS One. 2017 Jun 22;12(6):e0179230. doi: 10.1371/journal.pone.0179230. eCollection 2017.


Loss of thrombospondin reveals a possible role for the extracellular matrix in chordotonal cap cell elongation.

Greenblatt Ben-El RT, Hassan A, Salzberg A.

Int J Dev Biol. 2017;61(3-4-5):311-318. doi: 10.1387/ijdb.160275as.


Building functional units of movement-generation and movement-sensation in the embryo.

Hasson P, Volk T, Salzberg A.

Int J Dev Biol. 2017;61(3-4-5):171-178. doi: 10.1387/ijdb.160279as. Review.


RNA-seq implicates deregulation of the immune system in the pathogenesis of diverticulitis.

Schieffer KM, Choi CS, Emrich S, Harris L, Deiling S, Karamchandani DM, Salzberg A, Kawasawa YI, Yochum GS, Koltun WA.

Am J Physiol Gastrointest Liver Physiol. 2017 Sep 1;313(3):G277-G284. doi: 10.1152/ajpgi.00136.2017. Epub 2017 Jun 15.


Variations in brain defects result from cellular mosaicism in the activation of heat shock signalling.

Ishii S, Torii M, Son AI, Rajendraprasad M, Morozov YM, Kawasawa YI, Salzberg AC, Fujimoto M, Brennand K, Nakai A, Mezger V, Gage FH, Rakic P, Hashimoto-Torii K.

Nat Commun. 2017 May 2;8:15157. doi: 10.1038/ncomms15157.


Analysis of single nucleotide variants of HFE gene and association to survival in The Cancer Genome Atlas GBM data.

Lee SY, Zhu J, Salzberg AC, Zhang B, Liu DJ, Muscat JE, Langan ST, Connor JR.

PLoS One. 2017 Mar 30;12(3):e0174778. doi: 10.1371/journal.pone.0174778. eCollection 2017.


Genome-wide mapping of histone H3K9me2 in acute myeloid leukemia reveals large chromosomal domains associated with massive gene silencing and sites of genome instability.

Salzberg AC, Harris-Becker A, Popova EY, Keasey N, Loughran TP, Claxton DF, Grigoryev SA.

PLoS One. 2017 Mar 16;12(3):e0173723. doi: 10.1371/journal.pone.0173723. eCollection 2017.


PIGN gene expression aberration is associated with genomic instability and leukemic progression in acute myeloid leukemia with myelodysplastic features.

Teye EK, Sido A, Xin P, Finnberg NK, Gokare P, Kawasawa YI, Salzberg AC, Shimko S, Bayerl M, Ehmann WC, Claxton DF, Rybka WB, Drabick JJ, Wang HG, Abraham T, El-Deiry WS, Brodsky RA, J Hohl R, Pu JJ.

Oncotarget. 2017 May 2;8(18):29887-29905. doi: 10.18632/oncotarget.15136.


APOL1-Mediated Cell Injury Involves Disruption of Conserved Trafficking Processes.

Kruzel-Davila E, Shemer R, Ofir A, Bavli-Kertselli I, Darlyuk-Saadon I, Oren-Giladi P, Wasser WG, Magen D, Zaknoun E, Schuldiner M, Salzberg A, Kornitzer D, Marelja Z, Simons M, Skorecki K.

J Am Soc Nephrol. 2017 Apr;28(4):1117-1130. doi: 10.1681/ASN.2016050546. Epub 2016 Nov 18.


Identification of novel targets of diabetic nephropathy and PEDF peptide treatment using RNA-seq.

Rubin A, Salzberg AC, Imamura Y, Grivitishvilli A, Tombran-Tink J.

BMC Genomics. 2016 Nov 17;17(1):936.


Simple Reshaping of the Breast in Massive Weight Loss Patients: Promising Preliminary Results.

Ikander P, Gad D, Gunnarsson GL, Boljanovic S, Salzberg A, Sørensen JA, Thomsen JB.

Ann Plast Surg. 2017 Feb;78(2):145-148. doi: 10.1097/SAP.0000000000000816.


RNA-seq analysis of developing olfactory bulb projection neurons.

Kawasawa YI, Salzberg AC, Li M, Šestan N, Greer CA, Imamura F.

Mol Cell Neurosci. 2016 Jul;74:78-86. doi: 10.1016/j.mcn.2016.03.009. Epub 2016 Apr 9.


A newly identified type of attachment cell is critical for normal patterning of chordotonal neurons.

Halachmi N, Nachman A, Salzberg A.

Dev Biol. 2016 Mar 1;411(1):61-71. doi: 10.1016/j.ydbio.2016.01.009. Epub 2016 Jan 19.


Identifying type 1 diabetes candidate genes by DNA microarray analysis of islet-specific CD4 + T cells.

Berry GJ, Frielle C, Brucklacher RM, Salzberg AC, Waldner H.

Genom Data. 2015 Jun 14;5:184-8. doi: 10.1016/j.gdata.2015.05.041. eCollection 2015 Sep.


The Versatile Extended Thoracodorsal Artery Perforator Flap for Breast Reconstruction.

Jacobs J, Børsen-Koch M, Gunnarsson GL, Tos T, Siim E, Udesen A, Hölmich LR, Salzberg A, Thomsen JB.

Ann Plast Surg. 2016 Oct;77(4):396-400. doi: 10.1097/SAP.0000000000000615.


Global deletion of BCATm increases expression of skeletal muscle genes associated with protein turnover.

Lynch CJ, Kimball SR, Xu Y, Salzberg AC, Kawasawa YI.

Physiol Genomics. 2015 Nov;47(11):569-80. doi: 10.1152/physiolgenomics.00055.2015. Epub 2015 Sep 8.


LSD1-Mediated Demethylation of H3K4me2 Is Required for the Transition from Late Progenitor to Differentiated Mouse Rod Photoreceptor.

Popova EY, Pinzon-Guzman C, Salzberg AC, Zhang SS, Barnstable CJ.

Mol Neurobiol. 2016 Sep;53(7):4563-81. doi: 10.1007/s12035-015-9395-8. Epub 2015 Aug 23.


Bilateral Breast Reconstruction with Extended Thoracodorsal Artery Perforator Propeller Flaps and Implants.

Gunnarsson GL, Børsen-Koch M, Nielsen HT, Salzberg A, Thomsen JB.

Plast Reconstr Surg Glob Open. 2015 Jul 8;3(6):e435. doi: 10.1097/GOX.0000000000000414. eCollection 2015 Jun.


Assessing the carcinogenic potential of low-dose exposures to chemical mixtures in the environment: the challenge ahead.

Goodson WH 3rd, Lowe L, Carpenter DO, Gilbertson M, Manaf Ali A, Lopez de Cerain Salsamendi A, Lasfar A, Carnero A, Azqueta A, Amedei A, Charles AK, Collins AR, Ward A, Salzberg AC, Colacci A, Olsen AK, Berg A, Barclay BJ, Zhou BP, Blanco-Aparicio C, Baglole CJ, Dong C, Mondello C, Hsu CW, Naus CC, Yedjou C, Curran CS, Laird DW, Koch DC, Carlin DJ, Felsher DW, Roy D, Brown DG, Ratovitski E, Ryan EP, Corsini E, Rojas E, Moon EY, Laconi E, Marongiu F, Al-Mulla F, Chiaradonna F, Darroudi F, Martin FL, Van Schooten FJ, Goldberg GS, Wagemaker G, Nangami GN, Calaf GM, Williams G, Wolf GT, Koppen G, Brunborg G, Lyerly HK, Krishnan H, Ab Hamid H, Yasaei H, Sone H, Kondoh H, Salem HK, Hsu HY, Park HH, Koturbash I, Miousse IR, Scovassi AI, Klaunig JE, Vondráček J, Raju J, Roman J, Wise JP Sr, Whitfield JR, Woodrick J, Christopher JA, Ochieng J, Martinez-Leal JF, Weisz J, Kravchenko J, Sun J, Prudhomme KR, Narayanan KB, Cohen-Solal KA, Moorwood K, Gonzalez L, Soucek L, Jian L, D'Abronzo LS, Lin LT, Li L, Gulliver L, McCawley LJ, Memeo L, Vermeulen L, Leyns L, Zhang L, Valverde M, Khatami M, Romano MF, Chapellier M, Williams MA, Wade M, Manjili MH, Lleonart ME, Xia M, Gonzalez MJ, Karamouzis MV, Kirsch-Volders M, Vaccari M, Kuemmerle NB, Singh N, Cruickshanks N, Kleinstreuer N, van Larebeke N, Ahmed N, Ogunkua O, Krishnakumar PK, Vadgama P, Marignani PA, Ghosh PM, Ostrosky-Wegman P, Thompson PA, Dent P, Heneberg P, Darbre P, Sing Leung P, Nangia-Makker P, Cheng QS, Robey RB, Al-Temaimi R, Roy R, Andrade-Vieira R, Sinha RK, Mehta R, Vento R, Di Fiore R, Ponce-Cusi R, Dornetshuber-Fleiss R, Nahta R, Castellino RC, Palorini R, Abd Hamid R, Langie SA, Eltom SE, Brooks SA, Ryeom S, Wise SS, Bay SN, Harris SA, Papagerakis S, Romano S, Pavanello S, Eriksson S, Forte S, Casey SC, Luanpitpong S, Lee TJ, Otsuki T, Chen T, Massfelder T, Sanderson T, Guarnieri T, Hultman T, Dormoy V, Odero-Marah V, Sabbisetti V, Maguer-Satta V, Rathmell WK, Engström W, Decker WK, Bisson WH, Rojanasakul Y, Luqmani Y, Chen Z, Hu Z.

Carcinogenesis. 2015 Jun;36 Suppl 1:S254-96. doi: 10.1093/carcin/bgv039. Review. Erratum in: Carcinogenesis. 2016 Mar;37(3):344.


Metabolic reprogramming and dysregulated metabolism: cause, consequence and/or enabler of environmental carcinogenesis?

Robey RB, Weisz J, Kuemmerle NB, Salzberg AC, Berg A, Brown DG, Kubik L, Palorini R, Al-Mulla F, Al-Temaimi R, Colacci A, Mondello C, Raju J, Woodrick J, Scovassi AI, Singh N, Vaccari M, Roy R, Forte S, Memeo L, Salem HK, Amedei A, Hamid RA, Williams GP, Lowe L, Meyer J, Martin FL, Bisson WH, Chiaradonna F, Ryan EP.

Carcinogenesis. 2015 Jun;36 Suppl 1:S203-31. doi: 10.1093/carcin/bgv037. Review.


Deconstructing the complexity of regulating common properties in different cell types: lessons from the delilah gene.

Nachman A, Halachmi N, Matia N, Manzur D, Salzberg A.

Dev Biol. 2015 Jul 15;403(2):180-91. doi: 10.1016/j.ydbio.2015.05.009. Epub 2015 May 16.


RNA sequencing reveals a slow to fast muscle fiber type transition after olanzapine infusion in rats.

Lynch CJ, Xu Y, Hajnal A, Salzberg AC, Kawasawa YI.

PLoS One. 2015 Apr 20;10(4):e0123966. doi: 10.1371/journal.pone.0123966. eCollection 2015.


Direct delayed breast reconstruction with TAP flap, implant and acellular dermal matrix (TAPIA).

Børsen-Koch M, Gunnarsson GL, Udesen A, Arffmann S, Jacobs J, Salzberg A, Thomsen JB.

J Plast Reconstr Aesthet Surg. 2015 Jun;68(6):815-21. doi: 10.1016/j.bjps.2015.02.004. Epub 2015 Feb 13.


Genome-wide transcriptional analyses of islet-specific CD4+ T cells identify Idd9 genes controlling diabetogenic T cell function.

Berry GJ, Frielle C, Luu T, Salzberg AC, Rainbow DB, Wicker LS, Waldner H.

J Immunol. 2015 Mar 15;194(6):2654-63. doi: 10.4049/jimmunol.1401288. Epub 2015 Feb 11.


Genetic and environmental influences on plasma vitamin D binding protein concentrations.

Wilson RT, Bortner JD Jr, Roff A, Das A, Battaglioli EJ, Richie JP Jr, Barnholtz-Sloan J, Chinchilli VM, Berg A, Liu G, Salzberg AC, El-Bayoumy K.

Transl Res. 2015 Jun;165(6):667-76. doi: 10.1016/j.trsl.2014.08.003. Epub 2014 Aug 27.


Regulation of UDP-glucuronosyltransferase 1A1 expression and activity by microRNA 491-3p.

Dluzen DF, Sun D, Salzberg AC, Jones N, Bushey RT, Robertson GP, Lazarus P.

J Pharmacol Exp Ther. 2014 Mar;348(3):465-77. doi: 10.1124/jpet.113.210658. Epub 2014 Jan 7.


The adenovirus E4orf4 protein induces a unique mode of cell death while inhibiting classical apoptosis.

Pechkovsky A, Salzberg A, Kleinberger T.

Cell Cycle. 2013 Aug 1;12(15):2343-4. doi: 10.4161/cc.25707. Epub 2013 Jul 11. No abstract available.


Homothorax plays autonomous and nonautonomous roles in proximodistal axis formation and migration of the Drosophila renal tubules.

Zohar-Stoopel A, Gonen N, Mahroum M, Ben-Zvi DS, Toledano H, Salzberg A.

Dev Dyn. 2014 Jan;243(1):132-44. doi: 10.1002/dvdy.24011. Epub 2013 Jul 29.


E4orf4 induces PP2A- and Src-dependent cell death in Drosophila melanogaster and at the same time inhibits classic apoptosis pathways.

Pechkovsky A, Lahav M, Bitman E, Salzberg A, Kleinberger T.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):E1724-33. doi: 10.1073/pnas.1220282110. Epub 2013 Apr 23.


Stage and gene specific signatures defined by histones H3K4me2 and H3K27me3 accompany mammalian retina maturation in vivo.

Popova EY, Xu X, DeWan AT, Salzberg AC, Berg A, Hoh J, Zhang SS, Barnstable CJ.

PLoS One. 2012;7(10):e46867. doi: 10.1371/journal.pone.0046867. Epub 2012 Oct 9.


Visualization of proprioceptors in Drosophila larvae and pupae.

Halachmi N, Nachman A, Salzberg A.

J Vis Exp. 2012 Jun 13;(64):e3846. doi: 10.3791/3846.


MiR-365 regulates lung cancer and developmental gene thyroid transcription factor 1.

Qi J, Rice SJ, Salzberg AC, Runkle EA, Liao J, Zander DS, Mu D.

Cell Cycle. 2012 Jan 1;11(1):177-86. doi: 10.4161/cc.11.1.18576. Epub 2012 Jan 1.


The effects of exercise on the neuronal response to food cues.

Cornier MA, Melanson EL, Salzberg AK, Bechtell JL, Tregellas JR.

Physiol Behav. 2012 Feb 28;105(4):1028-34. doi: 10.1016/j.physbeh.2011.11.023. Epub 2011 Dec 3.


Spatial regulation of cell adhesion in the Drosophila wing is mediated by Delilah, a potent activator of βPS integrin expression.

Egoz-Matia N, Nachman A, Halachmi N, Toder M, Klein Y, Salzberg A.

Dev Biol. 2011 Mar 1;351(1):99-109. doi: 10.1016/j.ydbio.2010.12.039. Epub 2011 Jan 4.


Classification of alcohol abuse by plasma protein biomarkers.

Freeman WM, Salzberg AC, Gonzales SW, Grant KA, Vrana KE.

Biol Psychiatry. 2010 Aug 1;68(3):219-22. doi: 10.1016/j.biopsych.2010.01.028. Epub 2010 Mar 17.

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