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Items: 1 to 50 of 145

1.

Creating basis for introducing non-invasive prenatal testing in the Estonian public health setting.

Žilina O, Rekker K, Kaplinski L, Sauk M, Paluoja P, Teder H, Ustav EL, Tõnisson N, Reimand T, Ridnõi K, Palta P, Vermeesch JR, Krjutškov K, Kurg A, Salumets A.

Prenat Diagn. 2019 Nov 6. doi: 10.1002/pd.5578. [Epub ahead of print] German.

PMID:
31691324
2.

A molecular tool for menstrual cycle phase dating of endometrial samples in endometriosis transcriptome studies†.

Saare M, Laisk T, Teder H, Paluoja P, Palta P, Koel M, Kirss F, Karro H, Sõritsa D, Salumets A, Krjutškov K, Peters M.

Biol Reprod. 2019 Nov 5. pii: ioz092. doi: 10.1093/biolre/ioz092. [Epub ahead of print] No abstract available.

PMID:
31687746
3.

In vitro fertilization does not increase the incidence of de novo copy number alterations in fetal and placental lineages.

Zamani Esteki M, Viltrop T, Tšuiko O, Tiirats A, Koel M, Nõukas M, Žilina O, Teearu K, Marjonen H, Kahila H, Meekels J, Söderström-Anttila V, Suikkari AM, Tiitinen A, Mägi R, Kõks S, Kaminen-Ahola N, Kurg A, Voet T, Vermeesch JR, Salumets A.

Nat Med. 2019 Nov 4. doi: 10.1038/s41591-019-0620-2. [Epub ahead of print]

PMID:
31686035
4.

Community curation of bioinformatics software and data resources.

Ison J, Ménager H, Brancotte B, Jaaniso E, Salumets A, Raček T, Lamprecht AL, Palmblad M, Kalaš M, Chmura P, Hancock JM, Schwämmle V, Ienasescu HI.

Brief Bioinform. 2019 Oct 16. pii: bbz075. doi: 10.1093/bib/bbz075. [Epub ahead of print]

PMID:
31624831
5.

MUC20 expression marks the receptive phase of the human endometrium.

Stepanjuk A, Koel M, Pook M, Saare M, Jääger K, Peters M, Krjutškov K, Ingerpuu S, Salumets A.

Reprod Biomed Online. 2019 May 11. pii: S1472-6483(19)30538-3. doi: 10.1016/j.rbmo.2019.05.004. [Epub ahead of print]

PMID:
31519421
6.

Uterine fluid proteins for minimally invasive assessment of endometrial receptivity.

Kasvandik S, Saarma M, Kaart T, Rooda I, Meikas AV, Ehrenberg A, Gemzell K, Lalitkumar PG, Salumets A, Peters M.

J Clin Endocrinol Metab. 2019 Sep 12. pii: dgz019. doi: 10.1210/clinem/dgz019. [Epub ahead of print]

PMID:
31512719
7.

Women with polycystic ovary syndrome present with altered endometrial expression of stanniocalcin-1.

Khatun M, Arffman RK, Lavogina D, Kangasniemi M, Laru J, Ahtikoski A, Lehtonen S, Paulson M, Hirschberg AL, Salumets A, Andersson LC, Piltonen TT.

Biol Reprod. 2019 Sep 9. pii: ioz180. doi: 10.1093/biolre/ioz180. [Epub ahead of print]

PMID:
31494675
8.

EXTL3-interacting endometriosis-specific serum factors induce colony formation of endometrial stromal cells.

Aints A, Mölder S, Salumets A.

Sci Rep. 2019 Aug 29;9(1):12562. doi: 10.1038/s41598-019-48840-8.

9.

The bio.tools registry of software tools and data resources for the life sciences.

Ison J, Ienasescu H, Chmura P, Rydza E, Ménager H, Kalaš M, Schwämmle V, Grüning B, Beard N, Lopez R, Duvaud S, Stockinger H, Persson B, Vařeková RS, Raček T, Vondrášek J, Peterson H, Salumets A, Jonassen I, Hooft R, Nyrönen T, Valencia A, Capella S, Gelpí J, Zambelli F, Savakis B, Leskošek B, Rapacki K, Blanchet C, Jimenez R, Oliveira A, Vriend G, Collin O, van Helden J, Løngreen P, Brunak S.

Genome Biol. 2019 Aug 12;20(1):164. doi: 10.1186/s13059-019-1772-6.

10.

Chemosensitivity and chemoresistance in endometriosis - differences for ectopic versus eutopic cells.

Lavogina D, Samuel K, Lavrits A, Meltsov A, Sõritsa D, Kadastik Ü, Peters M, Rinken A, Salumets A.

Reprod Biomed Online. 2019 Oct;39(4):556-568. doi: 10.1016/j.rbmo.2019.05.019. Epub 2019 May 31.

PMID:
31377021
11.

Computational framework for targeted high-coverage sequencing based NIPT.

Teder H, Paluoja P, Rekker K, Salumets A, Krjutškov K, Palta P.

PLoS One. 2019 Jul 8;14(7):e0209139. doi: 10.1371/journal.pone.0209139. eCollection 2019.

12.

Detection of a balanced translocation carrier through trophectoderm biopsy analysis: a case report.

Tšuiko O, Dmitrijeva T, Kask K, Tammur P, Tõnisson N, Salumets A, Jatsenko T.

Mol Cytogenet. 2019 Jun 18;12:28. doi: 10.1186/s13039-019-0444-2. eCollection 2019.

13.

A case report and follow-up of the first live birth after heterotopic transplantation of cryopreserved ovarian tissue in Eastern Europe.

Tammiste T, Kask K, Padrik P, Idla K, Rosenstein K, Jatsenko T, Veerus P, Salumets A.

BMC Womens Health. 2019 May 14;19(1):65. doi: 10.1186/s12905-019-0764-8.

14.

A molecular tool for menstrual cycle phase dating of endometrial samples in endometriosis transcriptome studies†.

Saare M, Laisk T, Teder H, Paluoja P, Palta P, Koel M, Kirss F, Karro H, Sõritsa D, Salumets A, Krjutškov K, Peters M.

Biol Reprod. 2019 Jul 1;101(1):1-3. doi: 10.1093/biolre/ioz072. No abstract available.

PMID:
31004479
15.

A dual colour FISH method for routine validation of sexed Bos taurus semen.

Reinsalu O, Scheler O, Mikelsaar R, Mikelsaar AV, Hallap T, Jaakma Ü, Padrik P, Kavak A, Salumets A, Kurg A.

BMC Vet Res. 2019 Apr 3;15(1):104. doi: 10.1186/s12917-019-1839-3.

16.

Potential vaginal probiotics: safety, tolerability and preliminary effectiveness.

Rostok M, Hütt P, Rööp T, Smidt I, Štšepetova J, Salumets A, Mändar R.

Benef Microbes. 2019 Apr 19;10(4):385-393. doi: 10.3920/BM2016.0123. Epub 2019 Mar 18.

PMID:
30882242
17.

TAC-seq: targeted DNA and RNA sequencing for precise biomarker molecule counting.

Teder H, Koel M, Paluoja P, Jatsenko T, Rekker K, Laisk-Podar T, Kukuškina V, Velthut-Meikas A, Fjodorova O, Peters M, Kere J, Salumets A, Palta P, Krjutškov K.

NPJ Genom Med. 2018 Dec 18;3:34. doi: 10.1038/s41525-018-0072-5. eCollection 2018.

18.

Large-scale genome-wide meta-analysis of polycystic ovary syndrome suggests shared genetic architecture for different diagnosis criteria.

Day F, Karaderi T, Jones MR, Meun C, He C, Drong A, Kraft P, Lin N, Huang H, Broer L, Magi R, Saxena R, Laisk T, Urbanek M, Hayes MG, Thorleifsson G, Fernandez-Tajes J, Mahajan A, Mullin BH, Stuckey BGA, Spector TD, Wilson SG, Goodarzi MO, Davis L, Obermayer-Pietsch B, Uitterlinden AG, Anttila V, Neale BM, Jarvelin MR, Fauser B, Kowalska I, Visser JA, Andersen M, Ong K, Stener-Victorin E, Ehrmann D, Legro RS, Salumets A, McCarthy MI, Morin-Papunen L, Thorsteinsdottir U, Stefansson K; 23andMe Research Team, Styrkarsdottir U, Perry JRB, Dunaif A, Laven J, Franks S, Lindgren CM, Welt CK.

PLoS Genet. 2018 Dec 19;14(12):e1007813. doi: 10.1371/journal.pgen.1007813. eCollection 2018 Dec.

19.

Differentially-Expressed miRNAs in Ectopic Stromal Cells Contribute to Endometriosis Development: The Plausible Role of miR-139-5p and miR-375.

Rekker K, Tasa T, Saare M, Samuel K, Kadastik Ü, Karro H, Götte M, Salumets A, Peters M.

Int J Mol Sci. 2018 Nov 28;19(12). pii: E3789. doi: 10.3390/ijms19123789.

20.

A Two-Cohort RNA-seq Study Reveals Changes in Endometrial and Blood miRNome in Fertile and Infertile Women.

Rekker K, Altmäe S, Suhorutshenko M, Peters M, Martinez-Blanch JF, Codoñer FM, Vilella F, Simón C, Salumets A, Velthut-Meikas A.

Genes (Basel). 2018 Nov 23;9(12). pii: E574. doi: 10.3390/genes9120574.

21.

Chromosomal scan of single sperm cells by combining fluorescence-activated cell sorting and next-generation sequencing.

Tran QT, Jatsenko T, Poolamets O, Tšuiko O, Lubenets D, Reimand T, Punab M, Peters M, Salumets A.

J Assist Reprod Genet. 2019 Jan;36(1):91-97. doi: 10.1007/s10815-018-1340-0. Epub 2018 Nov 9.

PMID:
30411275
22.

Demographic and evolutionary trends in ovarian function and aging.

Laisk T, Tšuiko O, Jatsenko T, Hõrak P, Otala M, Lahdenperä M, Lummaa V, Tuuri T, Salumets A, Tapanainen JS.

Hum Reprod Update. 2019 Jan 1;25(1):34-50. doi: 10.1093/humupd/dmy031.

PMID:
30346539
23.

Endometrial receptivity revisited: endometrial transcriptome adjusted for tissue cellular heterogeneity.

Suhorutshenko M, Kukushkina V, Velthut-Meikas A, Altmäe S, Peters M, Mägi R, Krjutškov K, Koel M, Codoñer FM, Martinez-Blanch JF, Vilella F, Simón C, Salumets A, Laisk T.

Hum Reprod. 2018 Nov 1;33(11):2074-2086. doi: 10.1093/humrep/dey301.

PMID:
30295736
24.

Hyperglycosylated hCG activates LH/hCG-receptor with lower activity than hCG.

Koistinen H, Koel M, Peters M, Rinken A, Lundin K, Tuuri T, Tapanainen JS, Alfthan H, Salumets A, Stenman UH, Lavogina D.

Mol Cell Endocrinol. 2019 Jan 5;479:103-109. doi: 10.1016/j.mce.2018.09.006. Epub 2018 Oct 2.

25.

Large-scale meta-analysis highlights the hypothalamic-pituitary-gonadal axis in the genetic regulation of menstrual cycle length.

Laisk T, Kukuškina V, Palmer D, Laber S, Chen CY, Ferreira T, Rahmioglu N, Zondervan K, Becker C, Smoller JW, Lippincott M, Salumets A, Granne I, Seminara S, Neale B, Mägi R, Lindgren CM.

Hum Mol Genet. 2018 Dec 15;27(24):4323-4332. doi: 10.1093/hmg/ddy317.

26.

Thinning and drilling laser-assisted hatching in thawed embryo transfer: A randomized controlled trial.

Le MT, Nguyen TTA, Nguyen TTT, Nguyen VT, Le DD, Nguyen VQH, Cao NT, Aints A, Salumets A.

Clin Exp Reprod Med. 2018 Sep;45(3):129-134. doi: 10.5653/cerm.2018.45.3.129. Epub 2018 Sep 3.

27.

Aberrant expression of genes associated with stemness and cancer in endometria and endometrioma in a subset of women with endometriosis.

Ponandai-Srinivasan S, Andersson KL, Nister M, Saare M, Hassan HA, Varghese SJ, Peters M, Salumets A, Gemzell-Danielsson K, Lalitkumar PGL.

Hum Reprod. 2018 Oct 1;33(10):1924-1938. doi: 10.1093/humrep/dey241.

PMID:
30020448
28.

rs10732516 polymorphism at the IGF2/H19 locus associates with genotype-specific effects on placental DNA methylation and birth weight of newborns conceived by assisted reproductive technology.

Marjonen H, Auvinen P, Kahila H, Tšuiko O, Kõks S, Tiirats A, Viltrop T, Tuuri T, Söderström-Anttila V, Suikkari AM, Salumets A, Tiitinen A, Kaminen-Ahola N.

Clin Epigenetics. 2018 Jun 18;10:80. doi: 10.1186/s13148-018-0511-2. eCollection 2018.

29.

Karyotype of the blastocoel fluid demonstrates low concordance with both trophectoderm and inner cell mass.

Tšuiko O, Zhigalina DI, Jatsenko T, Skryabin NA, Kanbekova OR, Artyukhova VG, Svetlakov AV, Teearu K, Trošin A, Salumets A, Kurg A, Lebedev IN.

Fertil Steril. 2018 Jun;109(6):1127-1134.e1. doi: 10.1016/j.fertnstert.2018.02.008.

PMID:
29935648
30.

DNA methylation alterations-potential cause of endometriosis pathogenesis or a reflection of tissue heterogeneity?

Saare M, Krigul KL, Laisk-Podar T, Ponandai-Srinivasan S, Rahmioglu N, Lalit Kumar PG, Zondervan K, Salumets A, Peters M.

Biol Reprod. 2018 Aug 1;99(2):273-282. doi: 10.1093/biolre/ioy067. Review.

PMID:
29796617
31.

Advances in the Molecular Pathophysiology, Genetics, and Treatment of Primary Ovarian Insufficiency.

Huhtaniemi I, Hovatta O, La Marca A, Livera G, Monniaux D, Persani L, Heddar A, Jarzabek K, Laisk-Podar T, Salumets A, Tapanainen JS, Veitia RA, Visser JA, Wieacker P, Wolczynski S, Misrahi M.

Trends Endocrinol Metab. 2018 Jun;29(6):400-419. doi: 10.1016/j.tem.2018.03.010. Epub 2018 Apr 26. Review.

32.

NIPTmer: rapid k-mer-based software package for detection of fetal aneuploidies.

Sauk M, Žilina O, Kurg A, Ustav EL, Peters M, Paluoja P, Roost AM, Teder H, Palta P, Brison N, Vermeesch JR, Krjutškov K, Salumets A, Kaplinski L.

Sci Rep. 2018 Apr 4;8(1):5616. doi: 10.1038/s41598-018-23589-8.

33.

A speculative outlook on embryonic aneuploidy: Can molecular pathways be involved?

Tšuiko O, Jatsenko T, Parameswaran Grace LK, Kurg A, Vermeesch JR, Lanner F, Altmäe S, Salumets A.

Dev Biol. 2019 Mar 1;447(1):3-13. doi: 10.1016/j.ydbio.2018.01.014. Epub 2018 Jan 31. Review.

PMID:
29391166
34.

Whole exome sequencing of benign pulmonary metastasizing leiomyoma reveals mutation in the BMP8B gene.

Sõritsa D, Teder H, Roosipuu R, Tamm H, Laisk-Podar T, Soplepmann P, Altraja A, Salumets A, Peters M.

BMC Med Genet. 2018 Jan 31;19(1):20. doi: 10.1186/s12881-018-0537-5.

35.

Genome stability of bovine in vivo-conceived cleavage-stage embryos is higher compared to in vitro-produced embryos.

Tšuiko O, Catteeuw M, Zamani Esteki M, Destouni A, Bogado Pascottini O, Besenfelder U, Havlicek V, Smits K, Kurg A, Salumets A, D'Hooghe T, Voet T, Van Soom A, Robert Vermeesch J.

Hum Reprod. 2017 Nov 1;32(11):2348-2357. doi: 10.1093/humrep/dex286.

PMID:
29040498
36.

Celebrating Baer - a Nordic scientist who discovered the mammalian oocyte.

Altmäe S, Acharya G, Salumets A.

Acta Obstet Gynecol Scand. 2017 Nov;96(11):1281-1282. doi: 10.1111/aogs.13234. No abstract available.

PMID:
29034960
37.

Role of Molecular Biology in Diagnosis and Characterization of Vulvo-Vaginitis in Clinical Practice.

Donders GGG, Ravel J, Vitali B, Netea MG, Salumets A, Unemo M.

Gynecol Obstet Invest. 2017;82(6):607-616. doi: 10.1159/000478982. Epub 2017 Oct 10.

PMID:
29017160
38.

Meta-signature of human endometrial receptivity: a meta-analysis and validation study of transcriptomic biomarkers.

Altmäe S, Koel M, Võsa U, Adler P, Suhorutšenko M, Laisk-Podar T, Kukushkina V, Saare M, Velthut-Meikas A, Krjutškov K, Aghajanova L, Lalitkumar PG, Gemzell-Danielsson K, Giudice L, Simón C, Salumets A.

Sci Rep. 2017 Aug 30;7(1):10077. doi: 10.1038/s41598-017-10098-3.

39.

The Influence of Different Maternal Microbial Communities on the Development of Infant Gut and Oral Microbiota.

Drell T, Štšepetova J, Simm J, Rull K, Aleksejeva A, Antson A, Tillmann V, Metsis M, Sepp E, Salumets A, Mändar R.

Sci Rep. 2017 Aug 30;7(1):9940. doi: 10.1038/s41598-017-09278-y.

40.

Compliance to the recommended use of folic acid supplements for women in Sweden is higher among those under treatment for infertility than among fertile controls and is also related to socioeconomic status and lifestyle.

Murto T, Yngve A, Skoog Svanberg A, Altmäe S, Salumets A, Wånggren K, Stavreus-Evers A.

Food Nutr Res. 2017 Jun 9;61(1):1334483. doi: 10.1080/16546628.2017.1334483. eCollection 2017.

41.

Challenges in endometriosis miRNA studies - From tissue heterogeneity to disease specific miRNAs.

Saare M, Rekker K, Laisk-Podar T, Rahmioglu N, Zondervan K, Salumets A, Götte M, Peters M.

Biochim Biophys Acta Mol Basis Dis. 2017 Sep;1863(9):2282-2292. doi: 10.1016/j.bbadis.2017.06.018. Epub 2017 Jun 23. Review.

42.

Optimizing bone morphogenic protein 4-mediated human embryonic stem cell differentiation into trophoblast-like cells using fibroblast growth factor 2 and transforming growth factor-β/activin/nodal signalling inhibition.

Koel M, Võsa U, Krjutškov K, Einarsdottir E, Kere J, Tapanainen J, Katayama S, Ingerpuu S, Jaks V, Stenman UH, Lundin K, Tuuri T, Salumets A.

Reprod Biomed Online. 2017 Sep;35(3):253-263. doi: 10.1016/j.rbmo.2017.06.003. Epub 2017 Jun 12.

PMID:
28647356
43.

DNA methylation changes in endometrium and correlation with gene expression during the transition from pre-receptive to receptive phase.

Kukushkina V, Modhukur V, Suhorutšenko M, Peters M, Mägi R, Rahmioglu N, Velthut-Meikas A, Altmäe S, Esteban FJ, Vilo J, Zondervan K, Salumets A, Laisk-Podar T.

Sci Rep. 2017 Jun 20;7(1):3916. doi: 10.1038/s41598-017-03682-0.

44.

High-throughput mRNA sequencing of stromal cells from endometriomas and endometrium.

Rekker K, Saare M, Eriste E, Tasa T, Kukuškina V, Roost AM, Anderson K, Samuel K, Karro H, Salumets A, Peters M.

Reproduction. 2017 Jul;154(1):93-100. doi: 10.1530/REP-17-0092. Epub 2017 May 11.

PMID:
28495852
45.

Demographic associations for autoantibodies in disease-free individuals of a European population.

Haller-Kikkatalo K, Alnek K, Metspalu A, Mihailov E, Metsküla K, Kisand K, Pisarev H, Salumets A, Uibo R.

Sci Rep. 2017 Mar 28;7:44846. doi: 10.1038/srep44846.

46.

Determination of biological activity of gonadotropins hCG and FSH by Förster resonance energy transfer based biosensors.

Mazina O, Allikalt A, Tapanainen JS, Salumets A, Rinken A.

Sci Rep. 2017 Feb 9;7:42219. doi: 10.1038/srep42219.

47.

Seminal microbiome in men with and without prostatitis.

Mändar R, Punab M, Korrovits P, Türk S, Ausmees K, Lapp E, Preem JK, Oopkaup K, Salumets A, Truu J.

Int J Urol. 2017 Mar;24(3):211-216. doi: 10.1111/iju.13286. Epub 2017 Feb 1.

48.

A novel hypothesis for histone-to-protamine transition in Bos taurus spermatozoa.

Sillaste G, Kaplinski L, Meier R, Jaakma Ü, Eriste E, Salumets A.

Reproduction. 2017 Mar;153(3):241-251. doi: 10.1530/REP-16-0441. Epub 2016 Nov 29.

49.

Erratum to: DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns.

Lokk K, Modhukur V, Rajashekar B, Märtens K, Mägi R, Kolde R, Koltšina M, Nilsson TK, Vilo J, Salumets A, Tönisson N.

Genome Biol. 2016 Nov 1;17(1):224. No abstract available.

50.

Compartmentalized gene expression profiling of receptive endometrium reveals progesterone regulated ENPP3 is differentially expressed and secreted in glycosylated form.

Boggavarapu NR, Lalitkumar S, Joshua V, Kasvandik S, Salumets A, Lalitkumar PG, Gemzell-Danielsson K.

Sci Rep. 2016 Sep 26;6:33811. doi: 10.1038/srep33811.

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