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Items: 1 to 50 of 68

1.

A reference genome for pea provides insight into legume genome evolution.

Kreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J.

Nat Genet. 2019 Sep;51(9):1411-1422. doi: 10.1038/s41588-019-0480-1. Epub 2019 Sep 2.

PMID:
31477930
2.

Tracing the ancestry of modern bread wheats.

Pont C, Leroy T, Seidel M, Tondelli A, Duchemin W, Armisen D, Lang D, Bustos-Korts D, Goué N, Balfourier F, Molnár-Láng M, Lage J, Kilian B, Özkan H, Waite D, Dyer S, Letellier T, Alaux M; Wheat and Barley Legacy for Breeding Improvement (WHEALBI) consortium, Russell J, Keller B, van Eeuwijk F, Spannagl M, Mayer KFX, Waugh R, Stein N, Cattivelli L, Haberer G, Charmet G, Salse J.

Nat Genet. 2019 May;51(5):905-911. doi: 10.1038/s41588-019-0393-z. Epub 2019 May 1.

PMID:
31043760
3.

Paleogenomics: reconstruction of plant evolutionary trajectories from modern and ancient DNA.

Pont C, Wagner S, Kremer A, Orlando L, Plomion C, Salse J.

Genome Biol. 2019 Feb 11;20(1):29. doi: 10.1186/s13059-019-1627-1.

4.

Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data.

Alaux M, Rogers J, Letellier T, Flores R, Alfama F, Pommier C, Mohellibi N, Durand S, Kimmel E, Michotey C, Guerche C, Loaec M, Lainé M, Steinbach D, Choulet F, Rimbert H, Leroy P, Guilhot N, Salse J, Feuillet C; International Wheat Genome Sequencing Consortium, Paux E, Eversole K, Adam-Blondon AF, Quesneville H.

Genome Biol. 2018 Aug 17;19(1):111. doi: 10.1186/s13059-018-1491-4.

5.

Oak genome reveals facets of long lifespan.

Plomion C, Aury JM, Amselem J, Leroy T, Murat F, Duplessis S, Faye S, Francillonne N, Labadie K, Le Provost G, Lesur I, Bartholomé J, Faivre-Rampant P, Kohler A, Leplé JC, Chantret N, Chen J, Diévart A, Alaeitabar T, Barbe V, Belser C, Bergès H, Bodénès C, Bogeat-Triboulot MB, Bouffaud ML, Brachi B, Chancerel E, Cohen D, Couloux A, Da Silva C, Dossat C, Ehrenmann F, Gaspin C, Grima-Pettenati J, Guichoux E, Hecker A, Herrmann S, Hugueney P, Hummel I, Klopp C, Lalanne C, Lascoux M, Lasserre E, Lemainque A, Desprez-Loustau ML, Luyten I, Madoui MA, Mangenot S, Marchal C, Maumus F, Mercier J, Michotey C, Panaud O, Picault N, Rouhier N, Rué O, Rustenholz C, Salin F, Soler M, Tarkka M, Velt A, Zanne AE, Martin F, Wincker P, Quesneville H, Kremer A, Salse J.

Nat Plants. 2018 Jul;4(7):440-452. doi: 10.1038/s41477-018-0172-3. Epub 2018 Jun 18.

6.

The Rosa genome provides new insights into the domestication of modern roses.

Raymond O, Gouzy J, Just J, Badouin H, Verdenaud M, Lemainque A, Vergne P, Moja S, Choisne N, Pont C, Carrère S, Caissard JC, Couloux A, Cottret L, Aury JM, Szécsi J, Latrasse D, Madoui MA, François L, Fu X, Yang SH, Dubois A, Piola F, Larrieu A, Perez M, Labadie K, Perrier L, Govetto B, Labrousse Y, Villand P, Bardoux C, Boltz V, Lopez-Roques C, Heitzler P, Vernoux T, Vandenbussche M, Quesneville H, Boualem A, Bendahmane A, Liu C, Le Bris M, Salse J, Baudino S, Benhamed M, Wincker P, Bendahmane M.

Nat Genet. 2018 Jun;50(6):772-777. doi: 10.1038/s41588-018-0110-3. Epub 2018 Apr 30.

7.

Improving Nelumbo nucifera genome assemblies using high-resolution genetic maps and BioNano genome mapping reveals ancient chromosome rearrangements.

Gui S, Peng J, Wang X, Wu Z, Cao R, Salse J, Zhang H, Zhu Z, Xia Q, Quan Z, Shu L, Ke W, Ding Y.

Plant J. 2018 May;94(4):721-734. doi: 10.1111/tpj.13894. Epub 2018 Apr 15.

8.

The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution.

Lang D, Ullrich KK, Murat F, Fuchs J, Jenkins J, Haas FB, Piednoel M, Gundlach H, Van Bel M, Meyberg R, Vives C, Morata J, Symeonidi A, Hiss M, Muchero W, Kamisugi Y, Saleh O, Blanc G, Decker EL, van Gessel N, Grimwood J, Hayes RD, Graham SW, Gunter LE, McDaniel SF, Hoernstein SNW, Larsson A, Li FW, Perroud PF, Phillips J, Ranjan P, Rokshar DS, Rothfels CJ, Schneider L, Shu S, Stevenson DW, Thümmler F, Tillich M, Villarreal Aguilar JC, Widiez T, Wong GK, Wymore A, Zhang Y, Zimmer AD, Quatrano RS, Mayer KFX, Goodstein D, Casacuberta JM, Vandepoele K, Reski R, Cuming AC, Tuskan GA, Maumus F, Salse J, Schmutz J, Rensing SA.

Plant J. 2018 Feb;93(3):515-533. doi: 10.1111/tpj.13801.

9.

Combined Genomic and Genetic Data Integration of Major Agronomical Traits in Bread Wheat (Triticum aestivum L.).

Quraishi UM, Pont C, Ain QU, Flores R, Burlot L, Alaux M, Quesneville H, Salse J.

Front Plant Sci. 2017 Nov 14;8:1843. doi: 10.3389/fpls.2017.01843. eCollection 2017.

10.

The bottle gourd genome provides insights into Cucurbitaceae evolution and facilitates mapping of a Papaya ring-spot virus resistance locus.

Wu S, Shamimuzzaman M, Sun H, Salse J, Sui X, Wilder A, Wu Z, Levi A, Xu Y, Ling KS, Fei Z.

Plant J. 2017 Dec;92(5):963-975. doi: 10.1111/tpj.13722. Epub 2017 Nov 12.

11.

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution.

Badouin H, Gouzy J, Grassa CJ, Murat F, Staton SE, Cottret L, Lelandais-Brière C, Owens GL, Carrère S, Mayjonade B, Legrand L, Gill N, Kane NC, Bowers JE, Hubner S, Bellec A, Bérard A, Bergès H, Blanchet N, Boniface MC, Brunel D, Catrice O, Chaidir N, Claudel C, Donnadieu C, Faraut T, Fievet G, Helmstetter N, King M, Knapp SJ, Lai Z, Le Paslier MC, Lippi Y, Lorenzon L, Mandel JR, Marage G, Marchand G, Marquand E, Bret-Mestries E, Morien E, Nambeesan S, Nguyen T, Pegot-Espagnet P, Pouilly N, Raftis F, Sallet E, Schiex T, Thomas J, Vandecasteele C, Varès D, Vear F, Vautrin S, Crespi M, Mangin B, Burke JM, Salse J, Muños S, Vincourt P, Rieseberg LH, Langlade NB.

Nature. 2017 Jun 1;546(7656):148-152. doi: 10.1038/nature22380. Epub 2017 May 22.

PMID:
28538728
12.

Reconstructing the genome of the most recent common ancestor of flowering plants.

Murat F, Armero A, Pont C, Klopp C, Salse J.

Nat Genet. 2017 Apr;49(4):490-496. doi: 10.1038/ng.3813. Epub 2017 Mar 13.

PMID:
28288112
13.

Wheat paleohistory created asymmetrical genomic evolution.

Pont C, Salse J.

Curr Opin Plant Biol. 2017 Apr;36:29-37. doi: 10.1016/j.pbi.2017.01.001. Epub 2017 Feb 7. Review.

PMID:
28182971
14.

Reconciling the evolutionary origin of bread wheat (Triticum aestivum).

El Baidouri M, Murat F, Veyssiere M, Molinier M, Flores R, Burlot L, Alaux M, Quesneville H, Pont C, Salse J.

New Phytol. 2017 Feb;213(3):1477-1486. doi: 10.1111/nph.14113. Epub 2016 Aug 23.

15.

Deciphering the evolutionary interplay between subgenomes following polyploidy: A paleogenomics approach in grasses.

Salse J.

Am J Bot. 2016 Jul;103(7):1167-74. doi: 10.3732/ajb.1500459. Epub 2016 Jul 17. Review.

16.

Erratum to: Understanding Brassicaceae evolution through ancestral genome reconstruction.

Murat F, Louis A, Maumus F, Armero A, Cook R, Quesneville H, Roest Crollius H, Salse J.

Genome Biol. 2016 Apr 4;17:64. doi: 10.1186/s13059-016-0887-2. No abstract available.

17.

Ancestors of modern plant crops.

Salse J.

Curr Opin Plant Biol. 2016 Apr;30:134-42. doi: 10.1016/j.pbi.2016.02.005. Epub 2016 Mar 14. Review.

PMID:
26985732
18.

Understanding Brassicaceae evolution through ancestral genome reconstruction.

Murat F, Louis A, Maumus F, Armero A, Cooke R, Quesneville H, Roest Crollius H, Salse J.

Genome Biol. 2015 Dec 10;16:262. doi: 10.1186/s13059-015-0814-y. Erratum in: Genome Biol. 2016;17(1):64.

19.

Evidence of intense chromosomal shuffling during conifer evolution.

de Miguel M, Bartholomé J, Ehrenmann F, Murat F, Moriguchi Y, Uchiyama K, Ueno S, Tsumura Y, Lagraulet H, de Maria N, Cabezas JA, Cervera MT, Gion JM, Salse J, Plomion C.

Genome Biol Evol. 2015 Oct;7(10):2799-2809. Epub 2015 Sep 23.

20.

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies.

Plomion C, Aury JM, Amselem J, Alaeitabar T, Barbe V, Belser C, Bergès H, Bodénès C, Boudet N, Boury C, Canaguier A, Couloux A, Da Silva C, Duplessis S, Ehrenmann F, Estrada-Mairey B, Fouteau S, Francillonne N, Gaspin C, Guichard C, Klopp C, Labadie K, Lalanne C, Le Clainche I, Leplé JC, Le Provost G, Leroy T, Lesur I, Martin F, Mercier J, Michotey C, Murat F, Salin F, Steinbach D, Faivre-Rampant P, Wincker P, Salse J, Quesneville H, Kremer A.

Mol Ecol Resour. 2016 Jan;16(1):254-65. doi: 10.1111/1755-0998.12425. Epub 2015 May 29.

PMID:
25944057
21.

The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release.

Lesur I, Le Provost G, Bento P, Da Silva C, Leplé JC, Murat F, Ueno S, Bartholomé J, Lalanne C, Ehrenmann F, Noirot C, Burban C, Léger V, Amselem J, Belser C, Quesneville H, Stierschneider M, Fluch S, Feldhahn L, Tarkka M, Herrmann S, Buscot F, Klopp C, Kremer A, Salse J, Aury JM, Plomion C.

BMC Genomics. 2015 Feb 21;16:112. doi: 10.1186/s12864-015-1331-9.

22.

Karyotype and gene order evolution from reconstructed extinct ancestors highlight contrasts in genome plasticity of modern rosid crops.

Murat F, Zhang R, Guizard S, Gavranović H, Flores R, Steinbach D, Quesneville H, Tannier E, Salse J.

Genome Biol Evol. 2015 Jan 29;7(3):735-49. doi: 10.1093/gbe/evv014.

23.

GenomicusPlants: a web resource to study genome evolution in flowering plants.

Louis A, Murat F, Salse J, Crollius HR.

Plant Cell Physiol. 2015 Jan;56(1):e4. doi: 10.1093/pcp/pcu177. Epub 2014 Nov 27.

24.

FRIZZY PANICLE drives supernumerary spikelets in bread wheat.

Dobrovolskaya O, Pont C, Sibout R, Martinek P, Badaeva E, Murat F, Chosson A, Watanabe N, Prat E, Gautier N, Gautier V, Poncet C, Orlov YL, Krasnikov AA, Bergès H, Salina E, Laikova L, Salse J.

Plant Physiol. 2015 Jan;167(1):189-99. doi: 10.1104/pp.114.250043. Epub 2014 Nov 14.

25.

A perspective from drug user organisations on 'ECDC and EMCDDA guidance: prevention and control of infectious diseases among people who inject drugs'.

Corbacho A, Rivera M, Trujillo F, Martí M, Carbonell J, Fernández F, Rosselló A, Perramon J, Salse J, Ramos I.

BMC Infect Dis. 2014;14 Suppl 6:S10. doi: 10.1186/1471-2334-14-S6-S10. Epub 2014 Sep 19. No abstract available.

26.

The genome of Eucalyptus grandis.

Myburg AA, Grattapaglia D, Tuskan GA, Hellsten U, Hayes RD, Grimwood J, Jenkins J, Lindquist E, Tice H, Bauer D, Goodstein DM, Dubchak I, Poliakov A, Mizrachi E, Kullan AR, Hussey SG, Pinard D, van der Merwe K, Singh P, van Jaarsveld I, Silva-Junior OB, Togawa RC, Pappas MR, Faria DA, Sansaloni CP, Petroli CD, Yang X, Ranjan P, Tschaplinski TJ, Ye CY, Li T, Sterck L, Vanneste K, Murat F, Soler M, Clemente HS, Saidi N, Cassan-Wang H, Dunand C, Hefer CA, Bornberg-Bauer E, Kersting AR, Vining K, Amarasinghe V, Ranik M, Naithani S, Elser J, Boyd AE, Liston A, Spatafora JW, Dharmwardhana P, Raja R, Sullivan C, Romanel E, Alves-Ferreira M, Külheim C, Foley W, Carocha V, Paiva J, Kudrna D, Brommonschenkel SH, Pasquali G, Byrne M, Rigault P, Tibbits J, Spokevicius A, Jones RC, Steane DA, Vaillancourt RE, Potts BM, Joubert F, Barry K, Pappas GJ, Strauss SH, Jaiswal P, Grima-Pettenati J, Salse J, Van de Peer Y, Rokhsar DS, Schmutz J.

Nature. 2014 Jun 19;510(7505):356-62. doi: 10.1038/nature13308. Epub 2014 Jun 11.

PMID:
24919147
27.

Genetic and molecular bases of yield-associated traits: a translational biology approach between rice and wheat.

Valluru R, Reynolds MP, Salse J.

Theor Appl Genet. 2014 Jul;127(7):1463-89. doi: 10.1007/s00122-014-2332-9. Epub 2014 Jun 10. Review.

PMID:
24913362
28.

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication.

Wu GA, Prochnik S, Jenkins J, Salse J, Hellsten U, Murat F, Perrier X, Ruiz M, Scalabrin S, Terol J, Takita MA, Labadie K, Poulain J, Couloux A, Jabbari K, Cattonaro F, Del Fabbro C, Pinosio S, Zuccolo A, Chapman J, Grimwood J, Tadeo FR, Estornell LH, Muñoz-Sanz JV, Ibanez V, Herrero-Ortega A, Aleza P, Pérez-Pérez J, Ramón D, Brunel D, Luro F, Chen C, Farmerie WG, Desany B, Kodira C, Mohiuddin M, Harkins T, Fredrikson K, Burns P, Lomsadze A, Borodovsky M, Reforgiato G, Freitas-Astúa J, Quetier F, Navarro L, Roose M, Wincker P, Schmutz J, Morgante M, Machado MA, Talon M, Jaillon O, Ollitrault P, Gmitter F, Rokhsar D.

Nat Biotechnol. 2014 Jul;32(7):656-62. doi: 10.1038/nbt.2906. Epub 2014 Jun 8.

29.

Characterization of polyploid wheat genomic diversity using a high-density 90,000 single nucleotide polymorphism array.

Wang S, Wong D, Forrest K, Allen A, Chao S, Huang BE, Maccaferri M, Salvi S, Milner SG, Cattivelli L, Mastrangelo AM, Whan A, Stephen S, Barker G, Wieseke R, Plieske J; International Wheat Genome Sequencing Consortium, Lillemo M, Mather D, Appels R, Dolferus R, Brown-Guedira G, Korol A, Akhunova AR, Feuillet C, Salse J, Morgante M, Pozniak C, Luo MC, Dvorak J, Morell M, Dubcovsky J, Ganal M, Tuberosa R, Lawley C, Mikoulitch I, Cavanagh C, Edwards KJ, Hayden M, Akhunov E.

Plant Biotechnol J. 2014 Aug;12(6):787-96. doi: 10.1111/pbi.12183. Epub 2014 Mar 20.

30.

Paleo-evolutionary plasticity of plant disease resistance genes.

Zhang R, Murat F, Pont C, Langin T, Salse J.

BMC Genomics. 2014 Mar 12;15:187. doi: 10.1186/1471-2164-15-187.

31.

Shared subgenome dominance following polyploidization explains grass genome evolutionary plasticity from a seven protochromosome ancestor with 16K protogenes.

Murat F, Zhang R, Guizard S, Flores R, Armero A, Pont C, Steinbach D, Quesneville H, Cooke R, Salse J.

Genome Biol Evol. 2014 Jan;6(1):12-33. doi: 10.1093/gbe/evt200.

32.

Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes.

Pont C, Murat F, Guizard S, Flores R, Foucrier S, Bidet Y, Quraishi UM, Alaux M, Doležel J, Fahima T, Budak H, Keller B, Salvi S, Maccaferri M, Steinbach D, Feuillet C, Quesneville H, Salse J.

Plant J. 2013 Dec;76(6):1030-44. doi: 10.1111/tpj.12366. Epub 2013 Nov 29.

33.

The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions.

Guo S, Zhang J, Sun H, Salse J, Lucas WJ, Zhang H, Zheng Y, Mao L, Ren Y, Wang Z, Min J, Guo X, Murat F, Ham BK, Zhang Z, Gao S, Huang M, Xu Y, Zhong S, Bombarely A, Mueller LA, Zhao H, He H, Zhang Y, Zhang Z, Huang S, Tan T, Pang E, Lin K, Hu Q, Kuang H, Ni P, Wang B, Liu J, Kou Q, Hou W, Zou X, Jiang J, Gong G, Klee K, Schoof H, Huang Y, Hu X, Dong S, Liang D, Wang J, Wu K, Xia Y, Zhao X, Zheng Z, Xing M, Liang X, Huang B, Lv T, Wang J, Yin Y, Yi H, Li R, Wu M, Levi A, Zhang X, Giovannoni JJ, Wang J, Li Y, Fei Z, Xu Y.

Nat Genet. 2013 Jan;45(1):51-8. doi: 10.1038/ng.2470. Epub 2012 Nov 25.

34.

Identification of glycosyltransferases involved in cell wall synthesis of wheat endosperm.

Suliman M, Chateigner-Boutin AL, Francin-Allami M, Partier A, Bouchet B, Salse J, Pont C, Marion J, Rogniaux H, Tessier D, Guillon F, Larré C.

J Proteomics. 2013 Jan 14;78:508-21. doi: 10.1016/j.jprot.2012.10.021. Epub 2012 Nov 2.

PMID:
23128297
35.

Comparative mapping in the Fagaceae and beyond with EST-SSRs.

Bodénès C, Chancerel E, Gailing O, Vendramin GG, Bagnoli F, Durand J, Goicoechea PG, Soliani C, Villani F, Mattioni C, Koelewijn HP, Murat F, Salse J, Roussel G, Boury C, Alberto F, Kremer A, Plomion C.

BMC Plant Biol. 2012 Aug 29;12:153. doi: 10.1186/1471-2229-12-153.

36.

Decoding plant and animal genome plasticity from differential paleo-evolutionary patterns and processes.

Murat F, Van de Peer Y, Salse J.

Genome Biol Evol. 2012;4(9):917-28. doi: 10.1093/gbe/evs066. Epub 2012 Jul 24.

37.

Deciphering the genomic structure, function and evolution of carotenogenesis related phytoene synthases in grasses.

Dibari B, Murat F, Chosson A, Gautier V, Poncet C, Lecomte P, Mercier I, Bergès H, Pont C, Blanco A, Salse J.

BMC Genomics. 2012 Jun 6;13:221. doi: 10.1186/1471-2164-13-221.

38.

Grass microRNA gene paleohistory unveils new insights into gene dosage balance in subgenome partitioning after whole-genome duplication.

Abrouk M, Zhang R, Murat F, Li A, Pont C, Mao L, Salse J.

Plant Cell. 2012 May;24(5):1776-92. doi: 10.1105/tpc.112.095752. Epub 2012 May 15.

39.

Translational Genomics in Legumes Allowed Placing In Silico 5460 Unigenes on the Pea Functional Map and Identified Candidate Genes in Pisum sativum L.

Bordat A, Savois V, Nicolas M, Salse J, Chauveau A, Bourgeois M, Potier J, Houtin H, Rond C, Murat F, Marget P, Aubert G, Burstin J.

G3 (Bethesda). 2011 Jul;1(2):93-103. doi: 10.1534/g3.111.000349. Epub 2011 Jul 1.

40.

In silico archeogenomics unveils modern plant genome organisation, regulation and evolution.

Salse J.

Curr Opin Plant Biol. 2012 Apr;15(2):122-30. doi: 10.1016/j.pbi.2012.01.001. Epub 2012 Jan 24. Review.

PMID:
22280839
41.

RNA-seq in grain unveils fate of neo- and paleopolyploidization events in bread wheat (Triticum aestivum L.).

Pont C, Murat F, Confolent C, Balzergue S, Salse J.

Genome Biol. 2011 Dec 2;12(12):R119. doi: 10.1186/gb-2011-12-12-r119.

42.

Microsatellite mapping of Ae. speltoides and map-based comparative analysis of the S, G, and B genomes of Triticeae species.

Dobrovolskaya O, Boeuf C, Salse J, Pont C, Sourdille P, Bernard M, Salina E.

Theor Appl Genet. 2011 Nov;123(7):1145-57. doi: 10.1007/s00122-011-1655-z. Epub 2011 Jul 27.

PMID:
21792632
43.

Mapping ancestral genomes with massive gene loss: a matrix sandwich problem.

Gavranović H, Chauve C, Salse J, Tannier E.

Bioinformatics. 2011 Jul 1;27(13):i257-65. doi: 10.1093/bioinformatics/btr224.

44.

Unlocking the barley genome by chromosomal and comparative genomics.

Mayer KF, Martis M, Hedley PE, Simková H, Liu H, Morris JA, Steuernagel B, Taudien S, Roessner S, Gundlach H, Kubaláková M, Suchánková P, Murat F, Felder M, Nussbaumer T, Graner A, Salse J, Endo T, Sakai H, Tanaka T, Itoh T, Sato K, Platzer M, Matsumoto T, Scholz U, Dolezel J, Waugh R, Stein N.

Plant Cell. 2011 Apr;23(4):1249-63. doi: 10.1105/tpc.110.082537. Epub 2011 Apr 5.

45.

Palaeogenomics in cereals: modeling of ancestors for modern species improvement.

Salse J, Feuillet C.

C R Biol. 2011 Mar;334(3):205-11. doi: 10.1016/j.crvi.2010.12.014. Epub 2011 Jan 31. Review.

PMID:
21377615
46.

Cross-genome map based dissection of a nitrogen use efficiency ortho-metaQTL in bread wheat unravels concerted cereal genome evolution.

Quraishi UM, Abrouk M, Murat F, Pont C, Foucrier S, Desmaizieres G, Confolent C, Rivière N, Charmet G, Paux E, Murigneux A, Guerreiro L, Lafarge S, Le Gouis J, Feuillet C, Salse J.

Plant J. 2011 Mar;65(5):745-56. doi: 10.1111/j.1365-313X.2010.04461.x. Epub 2011 Jan 19.

47.

The genome of Theobroma cacao.

Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sallet E, Schiex T, Dievart A, Kramer M, Gelley L, Shi Z, Bérard A, Viot C, Boccara M, Risterucci AM, Guignon V, Sabau X, Axtell MJ, Ma Z, Zhang Y, Brown S, Bourge M, Golser W, Song X, Clement D, Rivallan R, Tahi M, Akaza JM, Pitollat B, Gramacho K, D'Hont A, Brunel D, Infante D, Kebe I, Costet P, Wing R, McCombie WR, Guiderdoni E, Quetier F, Panaud O, Wincker P, Bocs S, Lanaud C.

Nat Genet. 2011 Feb;43(2):101-8. doi: 10.1038/ng.736. Epub 2010 Dec 26.

PMID:
21186351
48.

Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak.

Ueno S, Le Provost G, Léger V, Klopp C, Noirot C, Frigerio JM, Salin F, Salse J, Abrouk M, Murat F, Brendel O, Derory J, Abadie P, Léger P, Cabane C, Barré A, de Daruvar A, Couloux A, Wincker P, Reviron MP, Kremer A, Plomion C.

BMC Genomics. 2010 Nov 23;11:650. doi: 10.1186/1471-2164-11-650.

49.

Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution.

Murat F, Xu JH, Tannier E, Abrouk M, Guilhot N, Pont C, Messing J, Salse J.

Genome Res. 2010 Nov;20(11):1545-57. doi: 10.1101/gr.109744.110. Epub 2010 Sep 28.

50.

Combined meta-genomics analyses unravel candidate genes for the grain dietary fiber content in bread wheat (Triticum aestivum L.).

Quraishi UM, Murat F, Abrouk M, Pont C, Confolent C, Oury FX, Ward J, Boros D, Gebruers K, Delcour JA, Courtin CM, Bedo Z, Saulnier L, Guillon F, Balzergue S, Shewry PR, Feuillet C, Charmet G, Salse J.

Funct Integr Genomics. 2011 Mar;11(1):71-83. doi: 10.1007/s10142-010-0183-2. Epub 2010 Aug 10.

PMID:
20697765

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