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Items: 1 to 50 of 154

1.

Discovery and cross-validation of peripheral blood and renal biopsy gene expression signatures from ethnically diverse kidney transplant populations.

Ventura CG, Whisenant T, Gelbart T, David DSR, Agena F, Salomon DR, David-Neto E, Kurian SM.

Am J Transplant. 2019 Jun 1. doi: 10.1111/ajt.15482. [Epub ahead of print]

PMID:
31152474
2.

Expression of the miR-150 tumor suppressor is restored by and synergizes with rapamycin in a human leukemia T-cell line.

Podshivalova K, Wang EA, Hart T, Salomon DR.

Leuk Res. 2018 Nov;74:1-9. doi: 10.1016/j.leukres.2018.09.009. Epub 2018 Sep 22.

PMID:
30269036
3.

Development and clinical validity of a novel blood-based molecular biomarker for subclinical acute rejection following kidney transplant.

Friedewald JJ, Kurian SM, Heilman RL, Whisenant TC, Poggio ED, Marsh C, Baliga P, Odim J, Brown MM, Ikle DN, Armstrong BD, Charette JI, Brietigam SS, Sustento-Reodica N, Zhao L, Kandpal M, Salomon DR, Abecassis MM; Clinical Trials in Organ Transplantation 08 (CTOT-08).

Am J Transplant. 2019 Jan;19(1):98-109. doi: 10.1111/ajt.15011. Epub 2018 Aug 31.

PMID:
29985559
4.

A genome-wide survey of mutations in the Jurkat cell line.

Gioia L, Siddique A, Head SR, Salomon DR, Su AI.

BMC Genomics. 2018 May 8;19(1):334. doi: 10.1186/s12864-018-4718-6.

5.

Microdroplet PCR for Highly Multiplexed Targeted Bisulfite Sequencing.

Komori HK, LaMere SA, Hart T, Head SR, Torkamani A, Salomon DR.

Methods Mol Biol. 2018;1708:333-348. doi: 10.1007/978-1-4939-7481-8_17.

PMID:
29224152
6.

Gene expression signature predicts human islet integrity and transplant functionality in diabetic mice.

Kurian SM, Ferreri K, Wang CH, Todorov I, Al-Abdullah IH, Rawson J, Mullen Y, Salomon DR, Kandeel F.

PLoS One. 2017 Oct 2;12(10):e0185331. doi: 10.1371/journal.pone.0185331. eCollection 2017.

7.

H3K27 Methylation Dynamics during CD4 T Cell Activation: Regulation of JAK/STAT and IL12RB2 Expression by JMJD3.

LaMere SA, Thompson RC, Meng X, Komori HK, Mark A, Salomon DR.

J Immunol. 2017 Nov 1;199(9):3158-3175. doi: 10.4049/jimmunol.1700475. Epub 2017 Sep 25.

8.

Precision medicine for suicidality: from universality to subtypes and personalization.

Niculescu AB, Le-Niculescu H, Levey DF, Phalen PL, Dainton HL, Roseberry K, Niculescu EM, Niezer JO, Williams A, Graham DL, Jones TJ, Venugopal V, Ballew A, Yard M, Gelbart T, Kurian SM, Shekhar A, Schork NJ, Sandusky GE, Salomon DR.

Mol Psychiatry. 2017 Sep;22(9):1250-1273. doi: 10.1038/mp.2017.128. Epub 2017 Aug 15.

9.

Biomarker Guidelines for High-Dimensional Genomic Studies in Transplantation: Adding Method to the Madness.

Kurian SM, Whisenant T, Mas V, Heilman R, Abecassis M, Salomon DR, Moss A, Kaplan B.

Transplantation. 2017 Mar;101(3):457-463. doi: 10.1097/TP.0000000000001622. No abstract available.

PMID:
28212255
10.

Orthogonal Comparison of Molecular Signatures of Kidney Transplants With Subclinical and Clinical Acute Rejection: Equivalent Performance Is Agnostic to Both Technology and Platform.

Kurian SM, Velazquez E, Thompson R, Whisenant T, Rose S, Riley N, Harrison F, Gelbart T, Friedewald JJ, Charette J, Brietigam S, Peysakhovich J, First MR, Abecassis MM, Salomon DR.

Am J Transplant. 2017 Aug;17(8):2103-2116. doi: 10.1111/ajt.14224. Epub 2017 Apr 3.

11.

Correction: Suppression of transcriptional drift extends C. elegans lifespan by postponing the onset of mortality.

Rangaraju S, Solis GM, Thompson RC, Gomez-Amaro RL, Kurian L, Encalada SE, Niculescu AB, Salomon DR, Petrascheck M.

Elife. 2016 Dec 30;5. pii: e24506. doi: 10.7554/eLife.24506. No abstract available.

12.

Changes in Urinary Microbiome Populations Correlate in Kidney Transplants With Interstitial Fibrosis and Tubular Atrophy Documented in Early Surveillance Biopsies.

Modena BD, Milam R, Harrison F, Cheeseman JA, Abecassis MM, Friedewald JJ, Kirk AD, Salomon DR.

Am J Transplant. 2017 Mar;17(3):712-723. doi: 10.1111/ajt.14038. Epub 2016 Oct 11.

13.

Peripheral Blood Cell Gene Expression Diagnostic for Identifying Symptomatic Transthyretin Amyloidosis Patients: Male and Female Specific Signatures.

Kurian SM, Novais M, Whisenant T, Gelbart T, Buxbaum JN, Kelly JW, Coelho T, Salomon DR.

Theranostics. 2016 Jul 18;6(11):1792-809. doi: 10.7150/thno.14584. eCollection 2016.

14.

Mood, stress and longevity: convergence on ANK3.

Rangaraju S, Levey DF, Nho K, Jain N, Andrews KD, Le-Niculescu H, Salomon DR, Saykin AJ, Petrascheck M, Niculescu AB.

Mol Psychiatry. 2016 Aug;21(8):1037-49. doi: 10.1038/mp.2016.65. Epub 2016 May 24.

PMID:
27217151
15.

Promoter H3K4 methylation dynamically reinforces activation-induced pathways in human CD4 T cells.

LaMere SA, Thompson RC, Komori HK, Mark A, Salomon DR.

Genes Immun. 2016 Jul;17(5):283-97. doi: 10.1038/gene.2016.19. Epub 2016 May 12.

16.

Genome-wide expression profiling in the peripheral blood of patients with fibromyalgia.

Jones KD, Gelbart T, Whisenant TC, Waalen J, Mondala TS, Iklé DN, Salomon DR, Bennett RM, Kurian SM.

Clin Exp Rheumatol. 2016 Mar-Apr;34(2 Suppl 96):S89-98. Epub 2016 Feb 12.

17.

Comparative top down proteomics of peripheral blood mononuclear cells from kidney transplant recipients with normal kidney biopsies or acute rejection.

Savaryn JP, Toby TK, Catherman AD, Fellers RT, LeDuc RD, Thomas PM, Friedewald JJ, Salomon DR, Abecassis MM, Kelleher NL.

Proteomics. 2016 Jul;16(14):2048-58. doi: 10.1002/pmic.201600008.

18.

UHM-ULM interactions in the RBM39-U2AF65 splicing-factor complex.

Stepanyuk GA, Serrano P, Peralta E, Farr CL, Axelrod HL, Geralt M, Das D, Chiu HJ, Jaroszewski L, Deacon AM, Lesley SA, Elsliger MA, Godzik A, Wilson IA, Wüthrich K, Salomon DR, Williamson JR.

Acta Crystallogr D Struct Biol. 2016 Apr;72(Pt 4):497-511. doi: 10.1107/S2059798316001248. Epub 2016 Mar 24.

19.

Towards understanding and predicting suicidality in women: biomarkers and clinical risk assessment.

Levey DF, Niculescu EM, Le-Niculescu H, Dainton HL, Phalen PL, Ladd TB, Weber H, Belanger E, Graham DL, Khan FN, Vanipenta NP, Stage EC, Ballew A, Yard M, Gelbart T, Shekhar A, Schork NJ, Kurian SM, Sandusky GE, Salomon DR, Niculescu AB.

Mol Psychiatry. 2016 Jun;21(6):768-85. doi: 10.1038/mp.2016.31. Epub 2016 Apr 5.

PMID:
27046645
20.

Gene Expression in Biopsies of Acute Rejection and Interstitial Fibrosis/Tubular Atrophy Reveals Highly Shared Mechanisms That Correlate With Worse Long-Term Outcomes.

Modena BD, Kurian SM, Gaber LW, Waalen J, Su AI, Gelbart T, Mondala TS, Head SR, Papp S, Heilman R, Friedewald JJ, Flechner SM, Marsh CL, Sung RS, Shidban H, Chan L, Abecassis MM, Salomon DR.

Am J Transplant. 2016 Jul;16(7):1982-98. doi: 10.1111/ajt.13728. Epub 2016 Mar 15.

21.

A CRISPR Way to Block PERVs--Engineering Organs for Transplantation.

Salomon DR.

N Engl J Med. 2016 Mar 17;374(11):1089-91. doi: 10.1056/NEJMcibr1515623. No abstract available.

PMID:
26981939
22.

Transplant-induced reactivation of murine cytomegalovirus immediate early gene expression is associated with recruitment of NF-κB and AP-1 to the major immediate early promoter.

Liu XF, Jie C, Zhang Z, Yan S, Wang JJ, Wang X, Kurian S, Salomon DR, Abecassis M, Hummel M.

J Gen Virol. 2016 Apr;97(4):941-54. doi: 10.1099/jgv.0.000407. Epub 2016 Jan 20.

23.

The Activation-Induced Assembly of an RNA/Protein Interactome Centered on the Splicing Factor U2AF2 Regulates Gene Expression in Human CD4 T Cells.

Whisenant TC, Peralta ER, Aarreberg LD, Gao NJ, Head SR, Ordoukhanian P, Williamson JR, Salomon DR.

PLoS One. 2015 Dec 7;10(12):e0144409. doi: 10.1371/journal.pone.0144409. eCollection 2015.

24.

Suppression of transcriptional drift extends C. elegans lifespan by postponing the onset of mortality.

Rangaraju S, Solis GM, Thompson RC, Gomez-Amaro RL, Kurian L, Encalada SE, Niculescu AB 3rd, Salomon DR, Petrascheck M.

Elife. 2015 Dec 1;4:e08833. doi: 10.7554/eLife.08833. Erratum in: Elife. 2016 Dec 30;5:null.

25.

Genomewide Association Study of Tacrolimus Concentrations in African American Kidney Transplant Recipients Identifies Multiple CYP3A5 Alleles.

Oetting WS, Schladt DP, Guan W, Miller MB, Remmel RP, Dorr C, Sanghavi K, Mannon RB, Herrera B, Matas AJ, Salomon DR, Kwok PY, Keating BJ, Israni AK, Jacobson PA; DeKAF Investigators.

Am J Transplant. 2016 Feb;16(2):574-82. doi: 10.1111/ajt.13495. Epub 2015 Oct 20.

26.

Understanding and predicting suicidality using a combined genomic and clinical risk assessment approach.

Niculescu AB, Levey DF, Phalen PL, Le-Niculescu H, Dainton HD, Jain N, Belanger E, James A, George S, Weber H, Graham DL, Schweitzer R, Ladd TB, Learman R, Niculescu EM, Vanipenta NP, Khan FN, Mullen J, Shankar G, Cook S, Humbert C, Ballew A, Yard M, Gelbart T, Shekhar A, Schork NJ, Kurian SM, Sandusky GE, Salomon DR.

Mol Psychiatry. 2015 Nov;20(11):1266-85. doi: 10.1038/mp.2015.112. Epub 2015 Aug 18.

27.

Nonchimeric HLA-Identical Renal Transplant Tolerance: Regulatory Immunophenotypic/Genomic Biomarkers.

Leventhal JR, Mathew JM, Salomon DR, Kurian SM, Friedewald JJ, Gallon L, Konieczna I, Tambur AR, Charette J, Levitsky J, Jie C, Kanwar YS, Abecassis MM, Miller J.

Am J Transplant. 2016 Jan;16(1):221-34. doi: 10.1111/ajt.13416. Epub 2015 Jul 30.

28.

AST/ASTS workshop on increasing organ donation in the United States: creating an "arc of change" from removing disincentives to testing incentives.

Salomon DR, Langnas AN, Reed AI, Bloom RD, Magee JC, Gaston RS; AST/ASTS Incentives Workshop Group (IWG).

Am J Transplant. 2015 May;15(5):1173-9. doi: 10.1111/ajt.13233. Epub 2015 Mar 31.

29.

Genomic profiles and predictors of early allograft dysfunction after human liver transplantation.

Kurian SM, Fouraschen SM, Langfelder P, Horvath S, Shaked A, Salomon DR, Olthoff KM.

Am J Transplant. 2015 Jun;15(6):1605-14. doi: 10.1111/ajt.13145. Epub 2015 Mar 31.

30.

Transplanting Kidneys from Deceased Donors With Severe Acute Kidney Injury.

Heilman RL, Smith ML, Kurian SM, Huskey J, Batra RK, Chakkera HA, Katariya NN, Khamash H, Moss A, Salomon DR, Reddy KS.

Am J Transplant. 2015 Aug;15(8):2143-51. doi: 10.1111/ajt.13260. Epub 2015 Mar 24.

31.

Defining CD4 T cell memory by the epigenetic landscape of CpG DNA methylation.

Komori HK, Hart T, LaMere SA, Chew PV, Salomon DR.

J Immunol. 2015 Feb 15;194(4):1565-79. doi: 10.4049/jimmunol.1401162. Epub 2015 Jan 9.

32.

Plasma protein biomarkers enhance the clinical prediction of kidney injury recovery in patients undergoing liver transplantation.

Levitsky J, Baker TB, Jie C, Ahya S, Levin M, Friedewald J, Al-Saden P, Salomon DR, Abecassis MM.

Hepatology. 2014 Dec;60(6):2017-26. doi: 10.1002/hep.27346. Epub 2014 Oct 29.

PMID:
25078558
33.

Molecular classifiers for acute kidney transplant rejection in peripheral blood by whole genome gene expression profiling.

Kurian SM, Williams AN, Gelbart T, Campbell D, Mondala TS, Head SR, Horvath S, Gaber L, Thompson R, Whisenant T, Lin W, Langfelder P, Robison EH, Schaffer RL, Fisher JS, Friedewald J, Flechner SM, Chan LK, Wiseman AC, Shidban H, Mendez R, Heilman R, Abecassis MM, Marsh CL, Salomon DR.

Am J Transplant. 2014 May;14(5):1164-72. doi: 10.1111/ajt.12671. Epub 2014 Apr 11.

34.

A structurally distinct human mycoplasma protein that generically blocks antigen-antibody union.

Grover RK, Zhu X, Nieusma T, Jones T, Boreo I, MacLeod AS, Mark A, Niessen S, Kim HJ, Kong L, Assad-Garcia N, Kwon K, Chesi M, Smider VV, Salomon DR, Jelinek DF, Kyle RA, Pyles RB, Glass JI, Ward AB, Wilson IA, Lerner RA.

Science. 2014 Feb 7;343(6171):656-661. doi: 10.1126/science.1246135.

35.

Library construction for next-generation sequencing: overviews and challenges.

Head SR, Komori HK, LaMere SA, Whisenant T, Van Nieuwerburgh F, Salomon DR, Ordoukhanian P.

Biotechniques. 2014 Feb 1;56(2):61-4, 66, 68, passim. doi: 10.2144/000114133. eCollection 2014. Review.

36.

Finding the active genes in deep RNA-seq gene expression studies.

Hart T, Komori HK, LaMere S, Podshivalova K, Salomon DR.

BMC Genomics. 2013 Nov 11;14:778. doi: 10.1186/1471-2164-14-778.

38.

Discovery and validation of blood biomarkers for suicidality.

Le-Niculescu H, Levey DF, Ayalew M, Palmer L, Gavrin LM, Jain N, Winiger E, Bhosrekar S, Shankar G, Radel M, Bellanger E, Duckworth H, Olesek K, Vergo J, Schweitzer R, Yard M, Ballew A, Shekhar A, Sandusky GE, Schork NJ, Kurian SM, Salomon DR, Niculescu AB 3rd.

Mol Psychiatry. 2013 Dec;18(12):1249-64. doi: 10.1038/mp.2013.95. Epub 2013 Aug 20.

39.

Genomic biomarkers correlate with HLA-identical renal transplant tolerance.

Leventhal JR, Mathew JM, Salomon DR, Kurian SM, Suthanthiran M, Tambur A, Friedewald J, Gallon L, Charette J, Levitsky J, Kanwar Y, Abecassis M, Miller J.

J Am Soc Nephrol. 2013 Sep;24(9):1376-85. doi: 10.1681/ASN.2013010068. Epub 2013 Jun 20.

40.

RNA purification and expression analysis using microarrays and RNA deep sequencing.

Head SR, Mondala T, Gelbart T, Ordoukhanian P, Chappel R, Hernandez G, Salomon DR.

Methods Mol Biol. 2013;1034:385-403. doi: 10.1007/978-1-62703-493-7_25.

PMID:
23775753
41.

New opportunities for organ transplantation research: epigenetics is likely to be an important determinant of the host immune response.

LaMere SA, Komori HK, Salomon DR.

Epigenomics. 2013 Jun;5(3):243-6. doi: 10.2217/epi.13.27. No abstract available.

PMID:
23750639
42.

Genomic meta-analysis of growth factor and integrin pathways in chronic kidney transplant injury.

Dosanjh A, Robison E, Mondala T, Head SR, Salomon DR, Kurian SM.

BMC Genomics. 2013 Apr 23;14:275. doi: 10.1186/1471-2164-14-275.

43.

HLA identical non-chimeric and HLA disparate chimeric renal transplant tolerance.

Leventhal JR, Mathew JM, Ildstad S, Salomon DR, Kurian SM, Suthanthiran M, Tambur A, Friedewald J, Gallon L, Charette J, Levitsky J, Kanwar Y, Abecassis M, Miller J.

Clin Transpl. 2013:145-56.

PMID:
25095503
44.

Challenges to doing genetic association studies in transplantation.

Salomon DR.

Am J Transplant. 2012 Dec;12(12):3173-5. doi: 10.1111/j.1600-6143.2012.04267.x. No abstract available.

45.

Hematopoietic stem cell gene therapy for the multisystemic lysosomal storage disorder cystinosis.

Harrison F, Yeagy BA, Rocca CJ, Kohn DB, Salomon DR, Cherqui S.

Mol Ther. 2013 Feb;21(2):433-44. doi: 10.1038/mt.2012.214. Epub 2012 Oct 23.

46.

Outcomes and native renal recovery following simultaneous liver-kidney transplantation.

Levitsky J, Baker T, Ahya SN, Levin ML, Friedewald J, Gallon L, Ho B, Skaro A, Krupp J, Wang E, Spies SM, Salomon DR, Abecassis MM.

Am J Transplant. 2012 Nov;12(11):2949-57. doi: 10.1111/j.1600-6143.2012.04182.x. Epub 2012 Jul 3.

47.

The costimulatory immunogen LPS induces the B-Cell clones that infiltrate transplanted human kidneys.

Grover RK, Cheng J, Peng Y, Jones TM, Ruiz DI, Ulevitch RJ, Glass JI, Dennis EA, Salomon DR, Lerner RA.

Proc Natl Acad Sci U S A. 2012 Apr 17;109(16):6036-41. doi: 10.1073/pnas.1202214109. Epub 2012 Apr 6. Erratum in: Proc Natl Acad Sci U S A. 2016 Oct 17;:.

48.

Comparison of the convergent receptor utilization of a retargeted feline leukemia virus envelope with a naturally-occurring porcine endogenous retrovirus A.

Mazari PM, Argaw T, Valdivieso L, Zhang X, Marcucci KT, Salomon DR, Wilson CA, Roth MJ.

Virology. 2012 Jun 5;427(2):118-26. doi: 10.1016/j.virol.2012.02.012. Epub 2012 Mar 8.

49.

Why are some amyloidoses systemic? Does hepatic "chaperoning at a distance" prevent cardiac deposition in a transgenic model of human senile systemic (transthyretin) amyloidosis?

Buxbaum JN, Tagoe C, Gallo G, Walker JR, Kurian S, Salomon DR.

FASEB J. 2012 Jun;26(6):2283-93. doi: 10.1096/fj.11-189571. Epub 2012 Feb 23.

50.

Systemic immunoregulatory and proteogenomic effects of tacrolimus to sirolimus conversion in liver transplant recipients.

Levitsky J, Mathew JM, Abecassis M, Tambur A, Leventhal J, Chandrasekaran D, Herrera N, Al-Saden P, Gallon L, Abdul-Nabi A, Yang GY, Kurian SM, Salomon DR, Miller J.

Hepatology. 2013 Jan;57(1):239-48. doi: 10.1002/hep.25579. Epub 2012 Jul 17.

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