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Items: 47

1.

Long-term circulation of Zika virus in Thailand: an observational study.

Ruchusatsawat K, Wongjaroen P, Posanacharoen A, Rodriguez-Barraquer I, Sangkitporn S, Cummings DAT, Salje H.

Lancet Infect Dis. 2019 Feb 27. pii: S1473-3099(18)30718-7. doi: 10.1016/S1473-3099(18)30718-7. [Epub ahead of print] Erratum in: Lancet Infect Dis. 2019 Mar 8;:.

PMID:
30826189
2.

Dengue pre-vaccination screening and positive predictive values.

Rodríguez-Barraquer I, Salje H, Cummings DA.

Lancet Infect Dis. 2019 Feb;19(2):132-134. doi: 10.1016/S1473-3099(18)30799-0. Epub 2019 Jan 30. No abstract available.

PMID:
30712834
3.

Differential mobility and local variation in infection attack rate.

Haw DJ, Cummings DAT, Lessler J, Salje H, Read JM, Riley S.

PLoS Comput Biol. 2019 Jan 22;15(1):e1006600. doi: 10.1371/journal.pcbi.1006600. eCollection 2019 Jan.

4.

Viridot: An automated virus plaque (immunofocus) counter for the measurement of serological neutralizing responses with application to dengue virus.

Katzelnick LC, Coello Escoto A, McElvany BD, Chávez C, Salje H, Luo W, Rodriguez-Barraquer I, Jarman R, Durbin AP, Diehl SA, Smith DJ, Whitehead SS, Cummings DAT.

PLoS Negl Trop Dis. 2018 Oct 24;12(10):e0006862. doi: 10.1371/journal.pntd.0006862. eCollection 2018 Oct.

5.

Dengue serosurvey after a 2-month long outbreak in Nîmes, France, 2015: was there more than met the eye?

Succo T, Noël H, Nikolay B, Maquart M, Cochet A, Leparc-Goffart I, Catelinois O, Salje H, Pelat C, de Crouy-Chanel P, de Valk H, Cauchemez S, Rousseau C.

Euro Surveill. 2018 Jun;23(23). doi: 10.2807/1560-7917.ES.2018.23.23.1700482.

6.

Using serological studies to reconstruct the history of bluetongue epidemic in French cattle under successive vaccination campaigns.

Courtejoie N, Salje H, Durand B, Zanella G, Cauchemez S.

Epidemics. 2018 Dec;25:54-60. doi: 10.1016/j.epidem.2018.05.005. Epub 2018 May 17.

7.

Reconstruction of antibody dynamics and infection histories to evaluate dengue risk.

Salje H, Cummings DAT, Rodriguez-Barraquer I, Katzelnick LC, Lessler J, Klungthong C, Thaisomboonsuk B, Nisalak A, Weg A, Ellison D, Macareo L, Yoon IK, Jarman R, Thomas S, Rothman AL, Endy T, Cauchemez S.

Nature. 2018 May;557(7707):719-723. doi: 10.1038/s41586-018-0157-4. Epub 2018 May 23.

8.

Micro-Hotspots of Risk in Urban Cholera Epidemics.

Azman AS, Luquero FJ, Salje H, Mbaïbardoum NN, Adalbert N, Ali M, Bertuzzo E, Finger F, Toure B, Massing LA, Ramazani R, Saga B, Allan M, Olson D, Leglise J, Porten K, Lessler J.

J Infect Dis. 2018 Aug 24;218(7):1164-1168. doi: 10.1093/infdis/jiy283.

9.

Understanding dengue virus evolution to support epidemic surveillance and counter-measure development.

Pollett S, Melendrez MC, Maljkovic Berry I, Duchêne S, Salje H, Cummings DAT, Jarman RG.

Infect Genet Evol. 2018 Aug;62:279-295. doi: 10.1016/j.meegid.2018.04.032. Epub 2018 Apr 25. Review.

10.

Characterization of the Spatial and Temporal Distribution of Nipah Virus Spillover Events in Bangladesh, 2007-2013.

Cortes MC, Cauchemez S, Lefrancq N, Luby SP, Jahangir Hossain M, Sazzad HMS, Rahman M, Daszak P, Salje H, Gurley ES.

J Infect Dis. 2018 Apr 11;217(9):1390-1394. doi: 10.1093/infdis/jiy015.

PMID:
29351657
11.

Genomic history of the seventh pandemic of cholera in Africa.

Weill FX, Domman D, Njamkepo E, Tarr C, Rauzier J, Fawal N, Keddy KH, Salje H, Moore S, Mukhopadhyay AK, Bercion R, Luquero FJ, Ngandjio A, Dosso M, Monakhova E, Garin B, Bouchier C, Pazzani C, Mutreja A, Grunow R, Sidikou F, Bonte L, Breurec S, Damian M, Njanpop-Lafourcade BM, Sapriel G, Page AL, Hamze M, Henkens M, Chowdhury G, Mengel M, Koeck JL, Fournier JM, Dougan G, Grimont PAD, Parkhill J, Holt KE, Piarroux R, Ramamurthy T, Quilici ML, Thomson NR.

Science. 2017 Nov 10;358(6364):785-789. doi: 10.1126/science.aad5901.

PMID:
29123067
12.

Convergence of Humans, Bats, Trees, and Culture in Nipah Virus Transmission, Bangladesh.

Gurley ES, Hegde ST, Hossain K, Sazzad HMS, Hossain MJ, Rahman M, Sharker MAY, Salje H, Islam MS, Epstein JH, Khan SU, Kilpatrick AM, Daszak P, Luby SP.

Emerg Infect Dis. 2017 Sep;23(9):1446-1453. doi: 10.3201/eid2309.161922.

13.

Reply to Shanks and Brundage: Many plausible mechanisms of pandemic mortality disparities.

Grantz KH, Rane MS, Salje H, Glass GE, Schachterle SE, Cummings DAT.

Proc Natl Acad Sci U S A. 2017 May 2;114(18):E3588-E3589. doi: 10.1073/pnas.1703851114. Epub 2017 Apr 6. No abstract available.

14.

Dengue diversity across spatial and temporal scales: Local structure and the effect of host population size.

Salje H, Lessler J, Maljkovic Berry I, Melendrez MC, Endy T, Kalayanarooj S, A-Nuegoonpipat A, Chanama S, Sangkijporn S, Klungthong C, Thaisomboonsuk B, Nisalak A, Gibbons RV, Iamsirithaworn S, Macareo LR, Yoon IK, Sangarsang A, Jarman RG, Cummings DA.

Science. 2017 Mar 24;355(6331):1302-1306. doi: 10.1126/science.aaj9384.

15.

Contact structure, mobility, environmental impact and behaviour: the importance of social forces to infectious disease dynamics and disease ecology.

Arthur RF, Gurley ES, Salje H, Bloomfield LS, Jones JH.

Philos Trans R Soc Lond B Biol Sci. 2017 May 5;372(1719). pii: 20160454. doi: 10.1098/rstb.2016.0454. Review.

16.

Real-Time Assessment of Health-Care Requirements During the Zika Virus Epidemic in Martinique.

Andronico A, Dorléans F, Fergé JL, Salje H, Ghawché F, Signate A, Daudens-Vaysse E, Baudouin L, Dub T, Aubry M, Cao-Lormeau VM, Ledrans M, Noel H, Mallet HP, Fontanet A, Cabié A, Cauchemez S.

Am J Epidemiol. 2017 Nov 15;186(10):1194-1203. doi: 10.1093/aje/kwx008.

17.

Evaluating Hospital-Based Surveillance for Outbreak Detection in Bangladesh: Analysis of Healthcare Utilization Data.

Nikolay B, Salje H, Sturm-Ramirez K, Azziz-Baumgartner E, Homaira N, Ahmed M, Iuliano AD, Paul RC, Rahman M, Hossain MJ, Luby SP, Cauchemez S, Gurley ES.

PLoS Med. 2017 Jan 17;14(1):e1002218. doi: 10.1371/journal.pmed.1002218. eCollection 2017 Jan.

18.

Spread of yellow fever virus outbreak in Angola and the Democratic Republic of the Congo 2015-16: a modelling study.

Kraemer MUG, Faria NR, Reiner RC Jr, Golding N, Nikolay B, Stasse S, Johansson MA, Salje H, Faye O, Wint GRW, Niedrig M, Shearer FM, Hill SC, Thompson RN, Bisanzio D, Taveira N, Nax HH, Pradelski BSR, Nsoesie EO, Murphy NR, Bogoch II, Khan K, Brownstein JS, Tatem AJ, de Oliveira T, Smith DL, Sall AA, Pybus OG, Hay SI, Cauchemez S.

Lancet Infect Dis. 2017 Mar;17(3):330-338. doi: 10.1016/S1473-3099(16)30513-8. Epub 2016 Dec 23. Erratum in: Lancet Infect Dis. 2019 Feb 15;:.

19.

Disparities in influenza mortality and transmission related to sociodemographic factors within Chicago in the pandemic of 1918.

Grantz KH, Rane MS, Salje H, Glass GE, Schachterle SE, Cummings DA.

Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):13839-13844. Epub 2016 Nov 21.

20.

How social structures, space, and behaviors shape the spread of infectious diseases using chikungunya as a case study.

Salje H, Lessler J, Paul KK, Azman AS, Rahman MW, Rahman M, Cummings D, Gurley ES, Cauchemez S.

Proc Natl Acad Sci U S A. 2016 Nov 22;113(47):13420-13425. Epub 2016 Nov 7.

21.

Estimating infectious disease transmission distances using the overall distribution of cases.

Salje H, Cummings DAT, Lessler J.

Epidemics. 2016 Dec;17:10-18. doi: 10.1016/j.epidem.2016.10.001. Epub 2016 Oct 7.

22.

Unraveling the drivers of MERS-CoV transmission.

Cauchemez S, Nouvellet P, Cori A, Jombart T, Garske T, Clapham H, Moore S, Mills HL, Salje H, Collins C, Rodriquez-Barraquer I, Riley S, Truelove S, Algarni H, Alhakeem R, AlHarbi K, Turkistani A, Aguas RJ, Cummings DA, Van Kerkhove MD, Donnelly CA, Lessler J, Fraser C, Al-Barrak A, Ferguson NM.

Proc Natl Acad Sci U S A. 2016 Aug 9;113(32):9081-6. doi: 10.1073/pnas.1519235113. Epub 2016 Jul 25.

23.

Assessing the global threat from Zika virus.

Lessler J, Chaisson LH, Kucirka LM, Bi Q, Grantz K, Salje H, Carcelen AC, Ott CT, Sheffield JS, Ferguson NM, Cummings DA, Metcalf CJ, Rodriguez-Barraquer I.

Science. 2016 Aug 12;353(6300):aaf8160. doi: 10.1126/science.aaf8160. Epub 2016 Jul 14. Review.

24.

Challenges in Real-Time Prediction of Infectious Disease: A Case Study of Dengue in Thailand.

Reich NG, Lauer SA, Sakrejda K, Iamsirithaworn S, Hinjoy S, Suangtho P, Suthachana S, Clapham HE, Salje H, Cummings DA, Lessler J.

PLoS Negl Trop Dis. 2016 Jun 15;10(6):e0004761. doi: 10.1371/journal.pntd.0004761. eCollection 2016 Jun.

25.

Measuring Spatial Dependence for Infectious Disease Epidemiology.

Lessler J, Salje H, Grabowski MK, Cummings DA.

PLoS One. 2016 May 19;11(5):e0155249. doi: 10.1371/journal.pone.0155249. eCollection 2016.

26.

Seasonal Distribution and Climatic Correlates of Dengue Disease in Dhaka, Bangladesh.

Morales I, Salje H, Saha S, Gurley ES.

Am J Trop Med Hyg. 2016 Jun 1;94(6):1359-61. doi: 10.4269/ajtmh.15-0846. Epub 2016 Apr 25.

27.

Dengue Vaccine in Regions of Endemic Disease.

Rodriguez-Barraquer I, Salje H, Cummings DA.

N Engl J Med. 2016 Apr 7;374(14):1388. doi: 10.1056/NEJMc1514451. No abstract available.

PMID:
27050220
28.

Association between Zika virus and microcephaly in French Polynesia, 2013-15: a retrospective study.

Cauchemez S, Besnard M, Bompard P, Dub T, Guillemette-Artur P, Eyrolle-Guignot D, Salje H, Van Kerkhove MD, Abadie V, Garel C, Fontanet A, Mallet HP.

Lancet. 2016 May 21;387(10033):2125-2132. doi: 10.1016/S0140-6736(16)00651-6. Epub 2016 Mar 16.

29.

Estimating the Severity and Subclinical Burden of Middle East Respiratory Syndrome Coronavirus Infection in the Kingdom of Saudi Arabia.

Lessler J, Salje H, Van Kerkhove MD, Ferguson NM, Cauchemez S, Rodriquez-Barraquer I, Hakeem R, Jombart T, Aguas R, Al-Barrak A, Cummings DA; MERS-CoV Scenario and Modeling Working Group.

Am J Epidemiol. 2016 Apr 1;183(7):657-63. doi: 10.1093/aje/kwv452. Epub 2016 Feb 4.

30.

Dengue Virus (DENV) Neutralizing Antibody Kinetics in Children After Symptomatic Primary and Postprimary DENV Infection.

Clapham HE, Rodriguez-Barraquer I, Azman AS, Althouse BM, Salje H, Gibbons RV, Rothman AL, Jarman RG, Nisalak A, Thaisomboonsuk B, Kalayanarooj S, Nimmannitya S, Vaughn DW, Green S, Yoon IK, Cummings DA.

J Infect Dis. 2016 May 1;213(9):1428-35. doi: 10.1093/infdis/jiv759. Epub 2015 Dec 23.

31.

Seroepidemiology of Human Enterovirus 71 Infection among Children, Cambodia.

Horwood PF, Andronico A, Tarantola A, Salje H, Duong V, Mey C, Ly S, Dussart P, Cauchemez S, Buchy P.

Emerg Infect Dis. 2016 Jan;22(1):92-5. doi: 10.3201/eid2201.151323.

32.

Use of Viremia to Evaluate the Baseline Case Fatality Ratio of Ebola Virus Disease and Inform Treatment Studies: A Retrospective Cohort Study.

Faye O, Andronico A, Faye O, Salje H, Boëlle PY, Magassouba N, Bah EI, Koivogui L, Diallo B, Diallo AA, Keita S, Konde MK, Fowler R, Fall G, Cauchemez S, Sall AA.

PLoS Med. 2015 Dec 1;12(12):e1001908. doi: 10.1371/journal.pmed.1001908. eCollection 2015 Dec.

33.

Utilization of an Eilat Virus-Based Chimera for Serological Detection of Chikungunya Infection.

Erasmus JH, Needham J, Raychaudhuri S, Diamond MS, Beasley DW, Morkowski S, Salje H, Fernandez Salas I, Kim DY, Frolov I, Nasar F, Weaver SC.

PLoS Negl Trop Dis. 2015 Oct 22;9(10):e0004119. doi: 10.1371/journal.pntd.0004119. eCollection 2015.

34.

Reconstruction of 60 Years of Chikungunya Epidemiology in the Philippines Demonstrates Episodic and Focal Transmission.

Salje H, Cauchemez S, Alera MT, Rodriguez-Barraquer I, Thaisomboonsuk B, Srikiatkhachorn A, Lago CB, Villa D, Klungthong C, Tac-An IA, Fernandez S, Velasco JM, Roque VG Jr, Nisalak A, Macareo LR, Levy JW, Cummings D, Yoon IK.

J Infect Dis. 2016 Feb 15;213(4):604-10. doi: 10.1093/infdis/jiv470. Epub 2015 Sep 25.

35.

Elevated transmission of upper respiratory illness among new recruits in military barracks in Thailand.

Levy JW, Bhoomiboonchoo P, Simasathien S, Salje H, Huang A, Rangsin R, Jarman RG, Fernandez S, Klungthong C, Hussem K, Gibbons RV, Yoon IK.

Influenza Other Respir Viruses. 2015 Nov;9(6):308-314. doi: 10.1111/irv.12345.

36.

High rate of subclinical chikungunya virus infection and association of neutralizing antibody with protection in a prospective cohort in the Philippines.

Yoon IK, Alera MT, Lago CB, Tac-An IA, Villa D, Fernandez S, Thaisomboonsuk B, Klungthong C, Levy JW, Velasco JM, Roque VG Jr, Salje H, Macareo LR, Hermann LL, Nisalak A, Srikiatkhachorn A.

PLoS Negl Trop Dis. 2015 May 7;9(5):e0003764. doi: 10.1371/journal.pntd.0003764. eCollection 2015 May.

37.

Dynamics of Japanese encephalitis virus transmission among pigs in Northwest Bangladesh and the potential impact of pig vaccination.

Khan SU, Salje H, Hannan A, Islam MA, Bhuyan AA, Islam MA, Rahman MZ, Nahar N, Hossain MJ, Luby SP, Gurley ES.

PLoS Negl Trop Dis. 2014 Sep 25;8(9):e3166. doi: 10.1371/journal.pntd.0003166. eCollection 2014 Sep.

38.

The spatial dynamics of dengue virus in Kamphaeng Phet, Thailand.

Bhoomiboonchoo P, Gibbons RV, Huang A, Yoon IK, Buddhari D, Nisalak A, Chansatiporn N, Thipayamongkolgul M, Kalanarooj S, Endy T, Rothman AL, Srikiatkhachorn A, Green S, Mammen MP, Cummings DA, Salje H.

PLoS Negl Trop Dis. 2014 Sep 11;8(9):e3138. doi: 10.1371/journal.pntd.0003138. eCollection 2014 Sep.

39.

The importance of implementation strategy in scaling up Xpert MTB/RIF for diagnosis of tuberculosis in the Indian health-care system: a transmission model.

Salje H, Andrews JR, Deo S, Satyanarayana S, Sun AY, Pai M, Dowdy DW.

PLoS Med. 2014 Jul 15;11(7):e1001674. doi: 10.1371/journal.pmed.1001674. eCollection 2014 Jul.

40.

Variability in dengue titer estimates from plaque reduction neutralization tests poses a challenge to epidemiological studies and vaccine development.

Salje H, Rodríguez-Barraquer I, Rainwater-Lovett K, Nisalak A, Thaisomboonsuk B, Thomas SJ, Fernandez S, Jarman RG, Yoon IK, Cummings DA.

PLoS Negl Trop Dis. 2014 Jun 26;8(6):e2952. doi: 10.1371/journal.pntd.0002952. eCollection 2014 Jun.

41.

Indoor exposure to particulate matter and age at first acute lower respiratory infection in a low-income urban community in Bangladesh.

Gurley ES, Salje H, Homaira N, Ram PK, Haque R, Petri WA Jr, Bresee J, Moss WJ, Luby SP, Breysse P, Azziz-Baumgartner E.

Am J Epidemiol. 2014 Apr 15;179(8):967-73. doi: 10.1093/aje/kwu002. Epub 2014 Mar 6.

42.

Modeling the impact of alternative strategies for rapid molecular diagnosis of tuberculosis in Southeast Asia.

Sun AY, Pai M, Salje H, Satyanarayana S, Deo S, Dowdy DW.

Am J Epidemiol. 2013 Dec 15;178(12):1740-9. doi: 10.1093/aje/kwt210. Epub 2013 Oct 7.

43.

Impact of neighborhood biomass cooking patterns on episodic high indoor particulate matter concentrations in clean fuel homes in Dhaka, Bangladesh.

Salje H, Gurley ES, Homaira N, Ram PK, Haque R, Petri W, Moss WJ, Luby SP, Breysse P, Azziz-Baumgartner E.

Indoor Air. 2014 Apr;24(2):213-20. doi: 10.1111/ina.12065. Epub 2013 Sep 23.

44.

Indoor exposure to particulate matter and the incidence of acute lower respiratory infections among children: a birth cohort study in urban Bangladesh.

Gurley ES, Homaira N, Salje H, Ram PK, Haque R, Petri W, Bresee J, Moss WJ, Breysse P, Luby SP, Azziz-Baumgartner E.

Indoor Air. 2013 Oct;23(5):379-86. doi: 10.1111/ina.12038. Epub 2013 Mar 21.

45.

Seasonal concentrations and determinants of indoor particulate matter in a low-income community in Dhaka, Bangladesh.

Gurley ES, Salje H, Homaira N, Ram PK, Haque R, Petri WA Jr, Bresee J, Moss WJ, Luby SP, Breysse P, Azziz-Baumgartner E.

Environ Res. 2013 Feb;121:11-6. doi: 10.1016/j.envres.2012.10.004. Epub 2012 Nov 3.

46.

Revealing the microscale spatial signature of dengue transmission and immunity in an urban population.

Salje H, Lessler J, Endy TP, Curriero FC, Gibbons RV, Nisalak A, Nimmannitya S, Kalayanarooj S, Jarman RG, Thomas SJ, Burke DS, Cummings DA.

Proc Natl Acad Sci U S A. 2012 Jun 12;109(24):9535-8. doi: 10.1073/pnas.1120621109. Epub 2012 May 29.

47.

8-OxoA inhibits the incision of an AP site by the DNA glycosylases Fpg, Nth and the AP endonuclease HAP1.

Lomax ME, Salje H, Cunniffe S, O'Neill P.

Radiat Res. 2005 Jan;163(1):79-84.

PMID:
15606310

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