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Items: 25

1.

Unbiased Fitness Estimation of Pooled Barcode or Amplicon Sequencing Studies.

Li F, Salit ML, Levy SF.

Cell Syst. 2018 Nov 28;7(5):521-525.e4. doi: 10.1016/j.cels.2018.09.004. Epub 2018 Nov 1.

PMID:
30391162
2.

Multiplexed precision genome editing with trackable genomic barcodes in yeast.

Roy KR, Smith JD, Vonesch SC, Lin G, Tu CS, Lederer AR, Chu A, Suresh S, Nguyen M, Horecka J, Tripathi A, Burnett WT, Morgan MA, Schulz J, Orsley KM, Wei W, Aiyar RS, Davis RW, Bankaitis VA, Haber JE, Salit ML, St Onge RP, Steinmetz LM.

Nat Biotechnol. 2018 Jul;36(6):512-520. doi: 10.1038/nbt.4137. Epub 2018 May 7.

3.

Summarizing performance for genome scale measurement of miRNA: reference samples and metrics.

Pine PS, Lund SP, Parsons JR, Vang LK, Mahabal AA, Cinquini L, Kelly SC, Kincaid H, Crichton DJ, Spira A, Liu G, Gower AC, Pass HI, Goparaju C, Dubinett SM, Krysan K, Stass SA, Kukuruga D, Van Keuren-Jensen K, Courtright-Lim A, Thompson KL, Rosenzweig BA, Sorbara L, Srivastava S, Salit ML.

BMC Genomics. 2018 Mar 6;19(1):180. doi: 10.1186/s12864-018-4496-1.

4.

Toward achieving harmonization in a nano-cytotoxicity assay measurement through an interlaboratory comparison study.

Elliott JT, Rösslein M, Song NW, Toman B, Kinsner-Ovaskainen A, Maniratanachote R, Salit ML, Petersen EJ, Sequeira F, Romsos EL, Kim SJ, Lee J, von Moos NR, Rossi F, Hirsch C, Krug HF, Suchaoin W, Wick P.

ALTEX. 2017;34(2):201-218. doi: 10.14573/altex.1605021. Epub 2016 Sep 29.

5.

Development and Characterization of Reference Materials for Genetic Testing: Focus on Public Partnerships.

Kalman LV, Datta V, Williams M, Zook JM, Salit ML, Han JY.

Ann Lab Med. 2016 Nov;36(6):513-20. doi: 10.3343/alm.2016.36.6.513. Review.

6.

In Vivo Site-Specific Protein Tagging with Diverse Amines Using an Engineered Sortase Variant.

Glasgow JE, Salit ML, Cochran JR.

J Am Chem Soc. 2016 Jun 22;138(24):7496-9. doi: 10.1021/jacs.6b03836. Epub 2016 Jun 9.

PMID:
27280683
7.

Evaluation of microbial qPCR workflows using engineered Saccharomyces cerevisiae.

Da Silva SM, Vang LK, Olson ND, Lund SP, Downey AS, Kelman Z, Salit ML, Lin NJ, Morrow JB.

Biomol Detect Quantif. 2016 Feb 19;7:27-33. doi: 10.1016/j.bdq.2016.01.001. eCollection 2016 Mar.

8.

PEPR: pipelines for evaluating prokaryotic references.

Olson ND, Zook JM, Samarov DV, Jackson SA, Salit ML.

Anal Bioanal Chem. 2016 Apr;408(11):2975-83. doi: 10.1007/s00216-015-9299-5. Epub 2016 Mar 2.

9.

Minimum information for reporting next generation sequence genotyping (MIRING): Guidelines for reporting HLA and KIR genotyping via next generation sequencing.

Mack SJ, Milius RP, Gifford BD, Sauter J, Hofmann J, Osoegawa K, Robinson J, Groeneweg M, Turenchalk GS, Adai A, Holcomb C, Rozemuller EH, Penning MT, Heuer ML, Wang C, Salit ML, Schmidt AH, Parham PR, Müller C, Hague T, Fischer G, Fernandez-Viňa M, Hollenbach JA, Norman PJ, Maiers M.

Hum Immunol. 2015 Dec;76(12):954-62. doi: 10.1016/j.humimm.2015.09.011. Epub 2015 Sep 25.

10.

Best practices for evaluating single nucleotide variant calling methods for microbial genomics.

Olson ND, Lund SP, Colman RE, Foster JT, Sahl JW, Schupp JM, Keim P, Morrow JB, Salit ML, Zook JM.

Front Genet. 2015 Jul 7;6:235. doi: 10.3389/fgene.2015.00235. eCollection 2015. Review.

11.

Good laboratory practice for clinical next-generation sequencing informatics pipelines.

Gargis AS, Kalman L, Bick DP, da Silva C, Dimmock DP, Funke BH, Gowrisankar S, Hegde MR, Kulkarni S, Mason CE, Nagarajan R, Voelkerding KV, Worthey EA, Aziz N, Barnes J, Bennett SF, Bisht H, Church DM, Dimitrova Z, Gargis SR, Hafez N, Hambuch T, Hyland FC, Luna RA, MacCannell D, Mann T, McCluskey MR, McDaniel TK, Ganova-Raeva LM, Rehm HL, Reid J, Campo DS, Resnick RB, Ridge PG, Salit ML, Skums P, Wong LJ, Zehnbauer BA, Zook JM, Lubin IM.

Nat Biotechnol. 2015 Jul;33(7):689-93. doi: 10.1038/nbt.3237. No abstract available.

PMID:
26154004
12.

Ontology analysis of global gene expression differences of human bone marrow stromal cells cultured on 3D scaffolds or 2D films.

Baker BA, Pine PS, Chatterjee K, Kumar G, Lin NJ, McDaniel JH, Salit ML, Simon CG Jr.

Biomaterials. 2014 Aug;35(25):6716-26. doi: 10.1016/j.biomaterials.2014.04.075. Epub 2014 May 17.

PMID:
24840613
13.

Characterization of in vitro transcription amplification linearity and variability in the low copy number regime using External RNA Control Consortium (ERCC) spike-ins.

Kralj JG, Salit ML.

Anal Bioanal Chem. 2013 Jan;405(1):315-20. doi: 10.1007/s00216-012-6445-1. Epub 2012 Oct 20.

PMID:
23086083
14.

The determination of stem cell fate by 3D scaffold structures through the control of cell shape.

Kumar G, Tison CK, Chatterjee K, Pine PS, McDaniel JH, Salit ML, Young MF, Simon CG Jr.

Biomaterials. 2011 Dec;32(35):9188-96. doi: 10.1016/j.biomaterials.2011.08.054. Epub 2011 Sep 3.

15.

Exploring the use of internal and externalcontrols for assessing microarray technical performance.

Lippa KA, Duewer DL, Salit ML, Game L, Causton HC.

BMC Res Notes. 2010 Dec 28;3:349. doi: 10.1186/1756-0500-3-349.

16.

Image-based feedback control for real-time sorting of microspheres in a microfluidic device.

Munson MS, Spotts JM, Niemistö A, Selinummi J, Kralj JG, Salit ML, Ozinsky A.

Lab Chip. 2010 Sep 21;10(18):2402-10. doi: 10.1039/c004708b. Epub 2010 Jun 30.

17.

Use of Standard Reference Material 2242 (Relative Intensity Correction Standard for Raman Spectroscopy) for microarray scanner qualification.

Satterfield MB, Salit ML, Choquette SJ.

Biotechniques. 2008 Aug;45(2):143-4, 148, 150 passim. doi: 10.2144/000112818.

18.

Microarray Scanner Performance Over a Five-Week Period as Measured With Cy5 and Cy3 Serial Dilution Slides.

Satterfield MB, Lippa K, Lu ZQ, Salit ML.

J Res Natl Inst Stand Technol. 2008 Jun 1;113(3):157-74. Print 2008 May-Jun.

19.
20.

Single-element solution comparisons with a high-performance inductively coupled plasma optical emission spectrometric method.

Salit ML, Turk GC, Lindstrom AP, Butler TA, Beck CM 2nd, Norman B.

Anal Chem. 2001 Oct 15;73(20):4821-9.

PMID:
11681457
21.

Using inductively coupled plasma-mass spectrometry for calibration transfer between environmental CRMs.

Turk GC, Yu LL, Salit ML, Guthrie WF.

Fresenius J Anal Chem. 2001 Jun;370(2-3):259-63.

PMID:
11451248
22.

An ICP-OES method with 0.2% expanded uncertainties for the characterization of LiA1O2

Salit ML, Vocke RD, Kelly WR.

Anal Chem. 2000 Aug 1;72(15):3504-11.

PMID:
10952535
23.

A drift correction procedure.

Salit ML, Turk GC.

Anal Chem. 1998 Aug 1;70(15):3184-90. doi: 10.1021/ac980095b.

PMID:
21644656
24.

Practical wavelength calibration considerations for UV-visible Fourier-transform spectroscopy.

Salit ML, Travis JC, Winchester MR.

Appl Opt. 1996 Jun 1;35(16):2960-70. doi: 10.1364/AO.35.002960.

PMID:
21085448
25.

Wavelengths of spectral lines in mercury pencil lamps.

Sansonetti CJ, Salit ML, Reader J.

Appl Opt. 1996 Jan 1;35(1):74-7. doi: 10.1364/AO.35.000074.

PMID:
21068979

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