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Items: 13

1.

Alpha, Beta, gamma human PapillomaViruses (HPV) detection with a different sets of primers in oropharyngeal swabs, anal and cervical samples.

Sias C, Salichos L, Lapa D, Del Nonno F, Baiocchini A, Capobianchi MR, Garbuglia AR.

Virol J. 2019 Mar 4;16(1):27. doi: 10.1186/s12985-019-1132-x.

2.

A Genome-Scale Investigation of How Sequence, Function, and Tree-Based Gene Properties Influence Phylogenetic Inference.

Shen XX, Salichos L, Rokas A.

Genome Biol Evol. 2016 Sep 2;8(8):2565-80. doi: 10.1093/gbe/evw179.

3.

Erratum to: The real cost of sequencing: scaling computation to keep pace with data generation.

Muir P, Li S, Lou S, Wang D, Spakowicz DJ, Salichos L, Zhang J, Weinstock GM, Isaacs F, Rozowsky J, Gerstein M.

Genome Biol. 2016 Apr 28;17:78. doi: 10.1186/s13059-016-0961-9. No abstract available.

4.

The real cost of sequencing: scaling computation to keep pace with data generation.

Muir P, Li S, Lou S, Wang D, Spakowicz DJ, Salichos L, Zhang J, Weinstock GM, Isaacs F, Rozowsky J, Gerstein M.

Genome Biol. 2016 Mar 23;17:53. doi: 10.1186/s13059-016-0917-0. Erratum in: Genome Biol. 2016;17:78.

5.

Computing the Internode Certainty and Related Measures from Partial Gene Trees.

Kobert K, Salichos L, Rokas A, Stamatakis A.

Mol Biol Evol. 2016 Jun;33(6):1606-17. doi: 10.1093/molbev/msw040. Epub 2016 Feb 25.

6.

Novel information theory-based measures for quantifying incongruence among phylogenetic trees.

Salichos L, Stamatakis A, Rokas A.

Mol Biol Evol. 2014 May;31(5):1261-71. doi: 10.1093/molbev/msu061. Epub 2014 Feb 7.

PMID:
24509691
7.

Inferring ancient divergences requires genes with strong phylogenetic signals.

Salichos L, Rokas A.

Nature. 2013 May 16;497(7449):327-31. doi: 10.1038/nature12130. Epub 2013 May 8.

PMID:
23657258
8.

The evolutionary imprint of domestication on genome variation and function of the filamentous fungus Aspergillus oryzae.

Gibbons JG, Salichos L, Slot JC, Rinker DC, McGary KL, King JG, Klich MA, Tabb DL, McDonald WH, Rokas A.

Curr Biol. 2012 Aug 7;22(15):1403-9. doi: 10.1016/j.cub.2012.05.033. Epub 2012 Jul 12.

9.

Transcriptome-wide analysis of small RNA expression in early zebrafish development.

Wei C, Salichos L, Wittgrove CM, Rokas A, Patton JG.

RNA. 2012 May;18(5):915-29. doi: 10.1261/rna.029090.111. Epub 2012 Mar 8.

10.

Evaluating ortholog prediction algorithms in a yeast model clade.

Salichos L, Rokas A.

PLoS One. 2011 Apr 13;6(4):e18755. doi: 10.1371/journal.pone.0018755.

11.

Complete bacteriophage transfer in a bacterial endosymbiont (Wolbachia) determined by targeted genome capture.

Kent BN, Salichos L, Gibbons JG, Rokas A, Newton IL, Clark ME, Bordenstein SR.

Genome Biol Evol. 2011;3:209-18. doi: 10.1093/gbe/evr007. Epub 2011 Feb 2.

12.

The diversity and evolution of circadian clock proteins in fungi.

Salichos L, Rokas A.

Mycologia. 2010 Mar-Apr;102(2):269-78.

PMID:
20361495
13.

Impact of viral selected mutations on T cell mediated immunity in chronically evolving and self limiting acute HCV infection.

Guglietta S, Garbuglia AR, Salichos L, Ruggeri L, Folgori A, Perrone MP, Camperio C, Mellace V, Maio G, Maio P, Capobianchi MR, Spada E, Gargano N, Scottà C, Piccolella E, Del Porto P.

Virology. 2009 Apr 10;386(2):398-406. doi: 10.1016/j.virol.2009.01.020. Epub 2009 Feb 20.

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