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Items: 1 to 50 of 508

1.

Declarative and procedural working memory updating processes are mutually facilitative.

Sali AW, Egner T.

Atten Percept Psychophys. 2019 Dec 24. doi: 10.3758/s13414-019-01887-1. [Epub ahead of print]

PMID:
31875313
2.

Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures.

Berman HM, Adams PD, Bonvin AA, Burley SK, Carragher B, Chiu W, DiMaio F, Ferrin TE, Gabanyi MJ, Goddard TD, Griffin PR, Haas J, Hanke CA, Hoch JC, Hummer G, Kurisu G, Lawson CL, Leitner A, Markley JL, Meiler J, Montelione GT, Phillips GN Jr, Prisner T, Rappsilber J, Schriemer DC, Schwede T, Seidel CAM, Strutzenberg TS, Svergun DI, Tajkhorshid E, Trewhella J, Vallat B, Velankar S, Vuister GW, Webb B, Westbrook JD, White KL, Sali A.

Structure. 2019 Dec 3;27(12):1745-1759. doi: 10.1016/j.str.2019.11.002. Epub 2019 Nov 25.

3.

The Rare Phenomenon of Loss of INI1 Expression at Recurrence/Progression of Primary Central Nervous System Tumors: Report of 3 Cases.

Sali AP, Chaubey V, Kodare D, Sahay A, Epari S.

Int J Surg Pathol. 2019 Nov 3:1066896919883942. doi: 10.1177/1066896919883942. [Epub ahead of print]

PMID:
31680589
4.

Histopathological risk scoring system as a tool for predicting lymph nodal metastasis in penile squamous cell carcinoma.

Sali AP, Menon S, Prakash G, Murthy V, Bakshi G, Mahantshetty U, Joshi A, Desai SB.

Pathology. 2019 Dec;51(7):696-704. doi: 10.1016/j.pathol.2019.08.003. Epub 2019 Oct 18.

PMID:
31635947
5.

SSEThread: Integrative threading of the DNA-PKcs sequence based on data from chemical cross-linking and hydrogen deuterium exchange.

Saltzberg DJ, Hepburn M, Pilla KB, Schriemer DC, Lees-Miller SP, Blundell TL, Sali A.

Prog Biophys Mol Biol. 2019 Oct;147:92-102. doi: 10.1016/j.pbiomolbio.2019.09.003. Epub 2019 Sep 27.

6.

Modeling Biological Complexes Using Integrative Modeling Platform.

Saltzberg D, Greenberg CH, Viswanath S, Chemmama I, Webb B, Pellarin R, Echeverria I, Sali A.

Methods Mol Biol. 2019;2022:353-377. doi: 10.1007/978-1-4939-9608-7_15.

PMID:
31396911
7.

Low-Slow-Small (LSS) Target Detection Based on Micro Doppler Analysis in Forward Scattering Radar Geometry.

Musa SA, Raja Abdullah RSA, Sali A, Ismail A, Rashid NEA.

Sensors (Basel). 2019 Jul 29;19(15). pii: E3332. doi: 10.3390/s19153332.

8.

Archiving and disseminating integrative structure models.

Vallat B, Webb B, Westbrook J, Sali A, Berman HM.

J Biomol NMR. 2019 Jul;73(6-7):385-398. doi: 10.1007/s10858-019-00264-2. Epub 2019 Jul 5.

9.

One-Stop MRI and MRI/transrectal ultrasound fusion-guided biopsy: an expedited pathway for prostate cancer diagnosis.

Tafuri A, Ashrafi AN, Palmer S, Shakir A, Cacciamani GE, Iwata A, Iwata T, Cai J, Sali A, Gupta C, Medina LG, Stern MC, Duddalwar V, Aron M, Gill IS, Abreu A.

World J Urol. 2019 Jun 7. doi: 10.1007/s00345-019-02835-2. [Epub ahead of print]

PMID:
31175460
10.

Full Embroidery Designed Electro-Textile Wearable Tag Antenna for WBAN Application.

Abbas B, K Khamas S, Ismail A, Sali A.

Sensors (Basel). 2019 May 30;19(11). pii: E2470. doi: 10.3390/s19112470.

11.

Principles for Integrative Structural Biology Studies.

Rout MP, Sali A.

Cell. 2019 May 30;177(6):1384-1403. doi: 10.1016/j.cell.2019.05.016. Review.

PMID:
31150619
12.

Plasma Vitamin C Concentrations and Cognitive Function: A Cross-Sectional Study.

Travica N, Ried K, Sali A, Hudson I, Scholey A, Pipingas A.

Front Aging Neurosci. 2019 Apr 2;11:72. doi: 10.3389/fnagi.2019.00072. eCollection 2019.

13.

Glutamine Side Chain 13C═18O as a Nonperturbative IR Probe of Amyloid Fibril Hydration and Assembly.

Wu H, Saltzberg DJ, Kratochvil HT, Jo H, Sali A, DeGrado WF.

J Am Chem Soc. 2019 May 8;141(18):7320-7326. doi: 10.1021/jacs.9b00577. Epub 2019 Apr 24.

14.

Importin-9 wraps around the H2A-H2B core to act as nuclear importer and histone chaperone.

Padavannil A, Sarkar P, Kim SJ, Cagatay T, Jiou J, Brautigam CA, Tomchick DR, Sali A, D'Arcy S, Chook YM.

Elife. 2019 Mar 11;8. pii: e43630. doi: 10.7554/eLife.43630.

15.

The Effect of Kyolic Aged Garlic Extract on Gut Microbiota, Inflammation, and Cardiovascular Markers in Hypertensives: The GarGIC Trial.

Ried K, Travica N, Sali A.

Front Nutr. 2018 Dec 11;5:122. doi: 10.3389/fnut.2018.00122. eCollection 2018.

16.

Optimizing model representation for integrative structure determination of macromolecular assemblies.

Viswanath S, Sali A.

Proc Natl Acad Sci U S A. 2019 Jan 8;116(2):540-545. doi: 10.1073/pnas.1814649116. Epub 2018 Dec 26.

17.

Information processing biases in the brain: Implications for decision-making and self-governance.

Sali AW, Anderson BA, Courtney SM.

Neuroethics. 2018 Oct;11(3):259-271. doi: 10.1007/s12152-016-9251-1. Epub 2016 Mar 3.

18.

Efficient Matrix-Based Channel Hopping Schemes for Blind Rendezvous in Distributed Cognitive Radio Networks.

Al-Mqdashi A, Sali A, Noordin NK, Hashim SJ, Nordin R.

Sensors (Basel). 2018 Dec 10;18(12). pii: E4360. doi: 10.3390/s18124360.

19.

Clustering Transmission Opportunity Length (CTOL) Model over Cognitive Radio Network.

Mohamad MH, Sali A, Hashim F, Nordin R, Takyu O.

Sensors (Basel). 2018 Dec 10;18(12). pii: E4351. doi: 10.3390/s18124351.

20.

Predicting CD4 T-cell epitopes based on antigen cleavage, MHCII presentation, and TCR recognition.

Schneidman-Duhovny D, Khuri N, Dong GQ, Winter MB, Shifrut E, Friedman N, Craik CS, Pratt KP, Paz P, Aswad F, Sali A.

PLoS One. 2018 Nov 6;13(11):e0206654. doi: 10.1371/journal.pone.0206654. eCollection 2018.

21.

Bayesian Weighing of Electron Cryo-Microscopy Data for Integrative Structural Modeling.

Bonomi M, Hanot S, Greenberg CH, Sali A, Nilges M, Vendruscolo M, Pellarin R.

Structure. 2019 Jan 2;27(1):175-188.e6. doi: 10.1016/j.str.2018.09.011. Epub 2018 Nov 1.

22.

Overcoming Limitations of LoRa Physical Layer in Image Transmission.

Jebril AH, Sali A, Ismail A, Rasid MFA.

Sensors (Basel). 2018 Sep 27;18(10). pii: E3257. doi: 10.3390/s18103257.

23.

Architecture of Pol II(G) and molecular mechanism of transcription regulation by Gdown1.

Jishage M, Yu X, Shi Y, Ganesan SJ, Chen WY, Sali A, Chait BT, Asturias FJ, Roeder RG.

Nat Struct Mol Biol. 2018 Sep;25(9):859-867. doi: 10.1038/s41594-018-0118-5. Epub 2018 Sep 6.

24.

EpCAM homo-oligomerization is not the basis for its role in cell-cell adhesion.

Gaber A, Kim SJ, Kaake RM, Benčina M, Krogan N, Šali A, Pavšič M, Lenarčič B.

Sci Rep. 2018 Sep 5;8(1):13269. doi: 10.1038/s41598-018-31482-7.

25.

Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a "Plug and Play" Domain.

Holliday GL, Akiva E, Meng EC, Brown SD, Calhoun S, Pieper U, Sali A, Booker SJ, Babbitt PC.

Methods Enzymol. 2018;606:1-71. doi: 10.1016/bs.mie.2018.06.004. Epub 2018 Jul 24.

26.

Nuclear Import Receptor Inhibits Phase Separation of FUS through Binding to Multiple Sites.

Yoshizawa T, Ali R, Jiou J, Fung HYJ, Burke KA, Kim SJ, Lin Y, Peeples WB, Saltzberg D, Soniat M, Baumhardt JM, Oldenbourg R, Sali A, Fawzi NL, Rosen MK, Chook YM.

Cell. 2018 Apr 19;173(3):693-705.e22. doi: 10.1016/j.cell.2018.03.003.

27.

Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules.

Vallat B, Webb B, Westbrook JD, Sali A, Berman HM.

Structure. 2018 Jun 5;26(6):894-904.e2. doi: 10.1016/j.str.2018.03.011. Epub 2018 Apr 12.

28.

Correction to: Reduced Value-Driven Attentional Capture among Children with ADHD Compared to Typically Developing Controls.

Sali AW, Anderson BA, Yantis S, Mostofsky SH, Rosch KS.

J Abnorm Child Psychol. 2018 Aug;46(6):1201-1202. doi: 10.1007/s10802-018-0417-7.

PMID:
29637439
29.

Opportunities and Challenges in Building a Spatiotemporal Multi-scale Model of the Human Pancreatic β Cell.

Singla J, McClary KM, White KL, Alber F, Sali A, Stevens RC.

Cell. 2018 Mar 22;173(1):11-19. doi: 10.1016/j.cell.2018.03.014. Review.

30.

Integrative structure and functional anatomy of a nuclear pore complex.

Kim SJ, Fernandez-Martinez J, Nudelman I, Shi Y, Zhang W, Raveh B, Herricks T, Slaughter BD, Hogan JA, Upla P, Chemmama IE, Pellarin R, Echeverria I, Shivaraju M, Chaudhury AS, Wang J, Williams R, Unruh JR, Greenberg CH, Jacobs EY, Yu Z, de la Cruz MJ, Mironska R, Stokes DL, Aitchison JD, Jarrold MF, Gerton JL, Ludtke SJ, Akey CW, Chait BT, Sali A, Rout MP.

Nature. 2018 Mar 22;555(7697):475-482. doi: 10.1038/nature26003. Epub 2018 Mar 14.

31.

Proteome-wide mapping of immune features onto Plasmodium protein three-dimensional structures.

Guy AJ, Irani V, Beeson JG, Webb B, Sali A, Richards JS, Ramsland PA.

Sci Rep. 2018 Mar 12;8(1):4355. doi: 10.1038/s41598-018-22592-3.

32.
33.

Prediction of enzymatic pathways by integrative pathway mapping.

Calhoun S, Korczynska M, Wichelecki DJ, San Francisco B, Zhao S, Rodionov DA, Vetting MW, Al-Obaidi NF, Lin H, O'Meara MJ, Scott DA, Morris JH, Russel D, Almo SC, Osterman AL, Gerlt JA, Jacobson MP, Shoichet BK, Sali A.

Elife. 2018 Jan 29;7. pii: e31097. doi: 10.7554/eLife.31097.

34.

Neural Basis of Cognitive Control over Movement Inhibition: Human fMRI and Primate Electrophysiology Evidence.

Xu KZ, Anderson BA, Emeric EE, Sali AW, Stuphorn V, Yantis S, Courtney SM.

Neuron. 2017 Dec 20;96(6):1447-1458.e6. doi: 10.1016/j.neuron.2017.11.010. Epub 2017 Dec 7.

35.

Assessing Exhaustiveness of Stochastic Sampling for Integrative Modeling of Macromolecular Structures.

Viswanath S, Chemmama IE, Cimermancic P, Sali A.

Biophys J. 2017 Dec 5;113(11):2344-2353. doi: 10.1016/j.bpj.2017.10.005.

36.

Immunoproteasome functions explained by divergence in cleavage specificity and regulation.

Winter MB, La Greca F, Arastu-Kapur S, Caiazza F, Cimermancic P, Buchholz TJ, Anderl JL, Ravalin M, Bohn MF, Sali A, O'Donoghue AJ, Craik CS.

Elife. 2017 Nov 28;6. pii: e27364. doi: 10.7554/eLife.27364.

37.

Chromoblastomycosis of the leg.

Sali AP, Sahay A.

Pol J Pathol. 2017;68(2):182-184. doi: 10.5114/pjp.2017.69695.

38.

Protein Structure Modeling with MODELLER.

Webb B, Sali A.

Methods Mol Biol. 2017;1654:39-54. doi: 10.1007/978-1-4939-7231-9_4.

PMID:
28986782
39.

Cross-activating c-Met/β1 integrin complex drives metastasis and invasive resistance in cancer.

Jahangiri A, Nguyen A, Chandra A, Sidorov MK, Yagnik G, Rick J, Han SW, Chen W, Flanigan PM, Schneidman-Duhovny D, Mascharak S, De Lay M, Imber B, Park CC, Matsumoto K, Lu K, Bergers G, Sali A, Weiss WA, Aghi MK.

Proc Natl Acad Sci U S A. 2017 Oct 10;114(41):E8685-E8694. doi: 10.1073/pnas.1701821114. Epub 2017 Sep 26.

40.

Integrative structure modeling with the Integrative Modeling Platform.

Webb B, Viswanath S, Bonomi M, Pellarin R, Greenberg CH, Saltzberg D, Sali A.

Protein Sci. 2018 Jan;27(1):245-258. doi: 10.1002/pro.3311. Epub 2017 Oct 10.

41.

Reduced Value-Driven Attentional Capture Among Children with ADHD Compared to Typically Developing Controls.

Sali AW, Anderson BA, Yantis S, Mostofsky SH, Rosch KS.

J Abnorm Child Psychol. 2018 Aug;46(6):1187-1200. doi: 10.1007/s10802-017-0345-y. Erratum in: J Abnorm Child Psychol. 2018 Apr 11;:.

42.

PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models.

Burley SK, Kurisu G, Markley JL, Nakamura H, Velankar S, Berman HM, Sali A, Schwede T, Trewhella J.

Structure. 2017 Sep 5;25(9):1317-1318. doi: 10.1016/j.str.2017.08.001.

43.

2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update.

Trewhella J, Duff AP, Durand D, Gabel F, Guss JM, Hendrickson WA, Hura GL, Jacques DA, Kirby NM, Kwan AH, Pérez J, Pollack L, Ryan TM, Sali A, Schneidman-Duhovny D, Schwede T, Svergun DI, Sugiyama M, Tainer JA, Vachette P, Westbrook J, Whitten AE.

Acta Crystallogr D Struct Biol. 2017 Sep 1;73(Pt 9):710-728. doi: 10.1107/S2059798317011597. Epub 2017 Aug 18.

44.

Vitamin C Status and Cognitive Function: A Systematic Review.

Travica N, Ried K, Sali A, Scholey A, Hudson I, Pipingas A.

Nutrients. 2017 Aug 30;9(9). pii: E960. doi: 10.3390/nu9090960. Review.

45.
46.

The proteasome-interacting Ecm29 protein disassembles the 26S proteasome in response to oxidative stress.

Wang X, Chemmama IE, Yu C, Huszagh A, Xu Y, Viner R, Block SA, Cimermancic P, Rychnovsky SD, Ye Y, Sali A, Huang L.

J Biol Chem. 2017 Sep 29;292(39):16310-16320. doi: 10.1074/jbc.M117.803619. Epub 2017 Aug 15.

47.

The molecular architecture of the yeast spindle pole body core determined by Bayesian integrative modeling.

Viswanath S, Bonomi M, Kim SJ, Klenchin VA, Taylor KC, Yabut KC, Umbreit NT, Van Epps HA, Meehl J, Jones MH, Russel D, Velazquez-Muriel JA, Winey M, Rayment I, Davis TN, Sali A, Muller EG.

Mol Biol Cell. 2017 Nov 7;28(23):3298-3314. doi: 10.1091/mbc.E17-06-0397. Epub 2017 Aug 16.

48.
49.

Bioactivity of Epigallocatechin Gallate Nanoemulsions Evaluated in Mice Model.

Koutelidakis AE, Argyri K, Sevastou Z, Lamprinaki D, Panagopoulou E, Paximada E, Sali A, Papalazarou V, Mallouchos A, Evageliou V, Kostourou V, Mantala I, Kapsokefalou M.

J Med Food. 2017 Sep;20(9):923-931. doi: 10.1089/jmf.2016.0160. Epub 2017 Jul 24.

PMID:
28737454
50.

Human Concentrative Nucleoside Transporter 3 (hCNT3, SLC28A3) Forms a Cyclic Homotrimer.

Stecula A, Schlessinger A, Giacomini KM, Sali A.

Biochemistry. 2017 Jul 11;56(27):3475-3483. doi: 10.1021/acs.biochem.7b00339. Epub 2017 Jun 29.

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