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Items: 1 to 50 of 487

1.

Overcoming Limitations of LoRa Physical Layer in Image Transmission.

Jebril AH, Sali A, Ismail A, Rasid MFA.

Sensors (Basel). 2018 Sep 27;18(10). pii: E3257. doi: 10.3390/s18103257.

2.

Architecture of Pol II(G) and molecular mechanism of transcription regulation by Gdown1.

Jishage M, Yu X, Shi Y, Ganesan SJ, Chen WY, Sali A, Chait BT, Asturias FJ, Roeder RG.

Nat Struct Mol Biol. 2018 Sep;25(9):859-867. doi: 10.1038/s41594-018-0118-5. Epub 2018 Sep 6.

PMID:
30190596
3.

EpCAM homo-oligomerization is not the basis for its role in cell-cell adhesion.

Gaber A, Kim SJ, Kaake RM, Benčina M, Krogan N, Šali A, Pavšič M, Lenarčič B.

Sci Rep. 2018 Sep 5;8(1):13269. doi: 10.1038/s41598-018-31482-7.

4.

Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a "Plug and Play" Domain.

Holliday GL, Akiva E, Meng EC, Brown SD, Calhoun S, Pieper U, Sali A, Booker SJ, Babbitt PC.

Methods Enzymol. 2018;606:1-71. doi: 10.1016/bs.mie.2018.06.004. Epub 2018 Jul 24.

PMID:
30097089
5.

Nuclear Import Receptor Inhibits Phase Separation of FUS through Binding to Multiple Sites.

Yoshizawa T, Ali R, Jiou J, Fung HYJ, Burke KA, Kim SJ, Lin Y, Peeples WB, Saltzberg D, Soniat M, Baumhardt JM, Oldenbourg R, Sali A, Fawzi NL, Rosen MK, Chook YM.

Cell. 2018 Apr 19;173(3):693-705.e22. doi: 10.1016/j.cell.2018.03.003.

PMID:
29677513
6.

Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules.

Vallat B, Webb B, Westbrook JD, Sali A, Berman HM.

Structure. 2018 Jun 5;26(6):894-904.e2. doi: 10.1016/j.str.2018.03.011. Epub 2018 Apr 12.

PMID:
29657133
7.

Correction to: Reduced Value-Driven Attentional Capture among Children with ADHD Compared to Typically Developing Controls.

Sali AW, Anderson BA, Yantis S, Mostofsky SH, Rosch KS.

J Abnorm Child Psychol. 2018 Aug;46(6):1201-1202. doi: 10.1007/s10802-018-0417-7.

PMID:
29637439
8.

Opportunities and Challenges in Building a Spatiotemporal Multi-scale Model of the Human Pancreatic β Cell.

Singla J, McClary KM, White KL, Alber F, Sali A, Stevens RC.

Cell. 2018 Mar 22;173(1):11-19. doi: 10.1016/j.cell.2018.03.014. Review.

PMID:
29570991
9.

Integrative structure and functional anatomy of a nuclear pore complex.

Kim SJ, Fernandez-Martinez J, Nudelman I, Shi Y, Zhang W, Raveh B, Herricks T, Slaughter BD, Hogan JA, Upla P, Chemmama IE, Pellarin R, Echeverria I, Shivaraju M, Chaudhury AS, Wang J, Williams R, Unruh JR, Greenberg CH, Jacobs EY, Yu Z, de la Cruz MJ, Mironska R, Stokes DL, Aitchison JD, Jarrold MF, Gerton JL, Ludtke SJ, Akey CW, Chait BT, Sali A, Rout MP.

Nature. 2018 Mar 22;555(7697):475-482. doi: 10.1038/nature26003. Epub 2018 Mar 14.

10.

Proteome-wide mapping of immune features onto Plasmodium protein three-dimensional structures.

Guy AJ, Irani V, Beeson JG, Webb B, Sali A, Richards JS, Ramsland PA.

Sci Rep. 2018 Mar 12;8(1):4355. doi: 10.1038/s41598-018-22592-3.

11.
12.

Prediction of enzymatic pathways by integrative pathway mapping.

Calhoun S, Korczynska M, Wichelecki DJ, San Francisco B, Zhao S, Rodionov DA, Vetting MW, Al-Obaidi NF, Lin H, O'Meara MJ, Scott DA, Morris JH, Russel D, Almo SC, Osterman AL, Gerlt JA, Jacobson MP, Shoichet BK, Sali A.

Elife. 2018 Jan 29;7. pii: e31097. doi: 10.7554/eLife.31097.

13.

Neural Basis of Cognitive Control over Movement Inhibition: Human fMRI and Primate Electrophysiology Evidence.

Xu KZ, Anderson BA, Emeric EE, Sali AW, Stuphorn V, Yantis S, Courtney SM.

Neuron. 2017 Dec 20;96(6):1447-1458.e6. doi: 10.1016/j.neuron.2017.11.010. Epub 2017 Dec 7.

PMID:
29224723
14.

Assessing Exhaustiveness of Stochastic Sampling for Integrative Modeling of Macromolecular Structures.

Viswanath S, Chemmama IE, Cimermancic P, Sali A.

Biophys J. 2017 Dec 5;113(11):2344-2353. doi: 10.1016/j.bpj.2017.10.005.

PMID:
29211988
15.

Immunoproteasome functions explained by divergence in cleavage specificity and regulation.

Winter MB, La Greca F, Arastu-Kapur S, Caiazza F, Cimermancic P, Buchholz TJ, Anderl JL, Ravalin M, Bohn MF, Sali A, O'Donoghue AJ, Craik CS.

Elife. 2017 Nov 28;6. pii: e27364. doi: 10.7554/eLife.27364.

16.

Chromoblastomycosis of the leg.

Sali AP, Sahay A.

Pol J Pathol. 2017;68(2):182-184. doi: 10.5114/pjp.2017.69695.

17.

Protein Structure Modeling with MODELLER.

Webb B, Sali A.

Methods Mol Biol. 2017;1654:39-54. doi: 10.1007/978-1-4939-7231-9_4.

PMID:
28986782
18.

Cross-activating c-Met/β1 integrin complex drives metastasis and invasive resistance in cancer.

Jahangiri A, Nguyen A, Chandra A, Sidorov MK, Yagnik G, Rick J, Han SW, Chen W, Flanigan PM, Schneidman-Duhovny D, Mascharak S, De Lay M, Imber B, Park CC, Matsumoto K, Lu K, Bergers G, Sali A, Weiss WA, Aghi MK.

Proc Natl Acad Sci U S A. 2017 Oct 10;114(41):E8685-E8694. doi: 10.1073/pnas.1701821114. Epub 2017 Sep 26.

19.

Integrative structure modeling with the Integrative Modeling Platform.

Webb B, Viswanath S, Bonomi M, Pellarin R, Greenberg CH, Saltzberg D, Sali A.

Protein Sci. 2018 Jan;27(1):245-258. doi: 10.1002/pro.3311. Epub 2017 Oct 10.

PMID:
28960548
20.

Reduced Value-Driven Attentional Capture Among Children with ADHD Compared to Typically Developing Controls.

Sali AW, Anderson BA, Yantis S, Mostofsky SH, Rosch KS.

J Abnorm Child Psychol. 2018 Aug;46(6):1187-1200. doi: 10.1007/s10802-017-0345-y. Erratum in: J Abnorm Child Psychol. 2018 Apr 11;:.

PMID:
28913698
21.

PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models.

Burley SK, Kurisu G, Markley JL, Nakamura H, Velankar S, Berman HM, Sali A, Schwede T, Trewhella J.

Structure. 2017 Sep 5;25(9):1317-1318. doi: 10.1016/j.str.2017.08.001.

22.

2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update.

Trewhella J, Duff AP, Durand D, Gabel F, Guss JM, Hendrickson WA, Hura GL, Jacques DA, Kirby NM, Kwan AH, Pérez J, Pollack L, Ryan TM, Sali A, Schneidman-Duhovny D, Schwede T, Svergun DI, Sugiyama M, Tainer JA, Vachette P, Westbrook J, Whitten AE.

Acta Crystallogr D Struct Biol. 2017 Sep 1;73(Pt 9):710-728. doi: 10.1107/S2059798317011597. Epub 2017 Aug 18.

23.

Vitamin C Status and Cognitive Function: A Systematic Review.

Travica N, Ried K, Sali A, Scholey A, Hudson I, Pipingas A.

Nutrients. 2017 Aug 30;9(9). pii: E960. doi: 10.3390/nu9090960. Review.

24.
25.

The proteasome-interacting Ecm29 protein disassembles the 26S proteasome in response to oxidative stress.

Wang X, Chemmama IE, Yu C, Huszagh A, Xu Y, Viner R, Block SA, Cimermancic P, Rychnovsky SD, Ye Y, Sali A, Huang L.

J Biol Chem. 2017 Sep 29;292(39):16310-16320. doi: 10.1074/jbc.M117.803619. Epub 2017 Aug 15.

26.

The molecular architecture of the yeast spindle pole body core determined by Bayesian integrative modeling.

Viswanath S, Bonomi M, Kim SJ, Klenchin VA, Taylor KC, Yabut KC, Umbreit NT, Van Epps HA, Meehl J, Jones MH, Russel D, Velazquez-Muriel JA, Winey M, Rayment I, Davis TN, Sali A, Muller EG.

Mol Biol Cell. 2017 Nov 7;28(23):3298-3314. doi: 10.1091/mbc.E17-06-0397. Epub 2017 Aug 16.

27.
28.

Bioactivity of Epigallocatechin Gallate Nanoemulsions Evaluated in Mice Model.

Koutelidakis AE, Argyri K, Sevastou Z, Lamprinaki D, Panagopoulou E, Paximada E, Sali A, Papalazarou V, Mallouchos A, Evageliou V, Kostourou V, Mantala I, Kapsokefalou M.

J Med Food. 2017 Sep;20(9):923-931. doi: 10.1089/jmf.2016.0160. Epub 2017 Jul 24.

PMID:
28737454
29.

Human Concentrative Nucleoside Transporter 3 (hCNT3, SLC28A3) Forms a Cyclic Homotrimer.

Stecula A, Schlessinger A, Giacomini KM, Sali A.

Biochemistry. 2017 Jul 11;56(27):3475-3483. doi: 10.1021/acs.biochem.7b00339. Epub 2017 Jun 29.

PMID:
28661652
30.

Spindle cell oncocytoma of adenohypophysis: Review of literature and report of another recurrent case.

Sali A, Epari S, Tampi C, Goel A.

Neuropathology. 2017 Dec;37(6):535-543. doi: 10.1111/neup.12393. Epub 2017 Jun 19. Review.

PMID:
28631277
31.

Regulation of Rvb1/Rvb2 by a Domain within the INO80 Chromatin Remodeling Complex Implicates the Yeast Rvbs as Protein Assembly Chaperones.

Zhou CY, Stoddard CI, Johnston JB, Trnka MJ, Echeverria I, Palovcak E, Sali A, Burlingame AL, Cheng Y, Narlikar GJ.

Cell Rep. 2017 Jun 6;19(10):2033-2044. doi: 10.1016/j.celrep.2017.05.029.

32.

Computational Discovery and Experimental Validation of Inhibitors of the Human Intestinal Transporter OATP2B1.

Khuri N, Zur AA, Wittwer MB, Lin L, Yee SW, Sali A, Giacomini KM.

J Chem Inf Model. 2017 Jun 26;57(6):1402-1413. doi: 10.1021/acs.jcim.6b00720. Epub 2017 Jun 15.

PMID:
28562037
33.

Quiz. What is your diagnosis?

Sali AP, Jai A.

Pol J Pathol. 2017;68(1):96. doi: 10.5114/pjp.2017.67624. No abstract available.

34.

Reconstruction of 3D structures of MET antibodies from electron microscopy 2D class averages.

Chen Q, Vieth M, Timm DE, Humblet C, Schneidman-Duhovny D, Chemmama IE, Sali A, Zeng W, Lu J, Liu L.

PLoS One. 2017 Apr 13;12(4):e0175758. doi: 10.1371/journal.pone.0175758. eCollection 2017.

35.

Youth Awareness on Sexually Transmitted Infections, HIV and AIDS in Secondary Schools in the Dschang Municipality (Cameroon): The Mobile Caravan Project.

Sobze MS, Tiotsia AT, Dongho GB, Tankui GA, Fokam J, Tsi KA, Fotso JR, Azeufack YN, Nkamedjie PP, Sali AB, Mabvouna RB, Ercoli L, Colizzi V, Russo G.

J Public Health Afr. 2017 Jan 18;7(2):614. doi: 10.4081/jphia.2016.614. eCollection 2016 Dec 31.

36.

Molecular Details Underlying Dynamic Structures and Regulation of the Human 26S Proteasome.

Wang X, Cimermancic P, Yu C, Schweitzer A, Chopra N, Engel JL, Greenberg C, Huszagh AS, Beck F, Sakata E, Yang Y, Novitsky EJ, Leitner A, Nanni P, Kahraman A, Guo X, Dixon JE, Rychnovsky SD, Aebersold R, Baumeister W, Sali A, Huang L.

Mol Cell Proteomics. 2017 May;16(5):840-854. doi: 10.1074/mcp.M116.065326. Epub 2017 Mar 14.

37.

Lineage-specific proteins essential for endocytosis in trypanosomes.

Manna PT, Obado SO, Boehm C, Gadelha C, Sali A, Chait BT, Rout MP, Field MC.

J Cell Sci. 2017 Apr 15;130(8):1379-1392. doi: 10.1242/jcs.191478. Epub 2017 Feb 23.

38.

Discovery of Competitive and Noncompetitive Ligands of the Organic Cation Transporter 1 (OCT1; SLC22A1).

Chen EC, Khuri N, Liang X, Stecula A, Chien HC, Yee SW, Huang Y, Sali A, Giacomini KM.

J Med Chem. 2017 Apr 13;60(7):2685-2696. doi: 10.1021/acs.jmedchem.6b01317. Epub 2017 Mar 15.

PMID:
28230985
39.

Molecular Architecture of the Major Membrane Ring Component of the Nuclear Pore Complex.

Upla P, Kim SJ, Sampathkumar P, Dutta K, Cahill SM, Chemmama IE, Williams R, Bonanno JB, Rice WJ, Stokes DL, Cowburn D, Almo SC, Sali A, Rout MP, Fernandez-Martinez J.

Structure. 2017 Mar 7;25(3):434-445. doi: 10.1016/j.str.2017.01.006. Epub 2017 Feb 2.

40.

Editorial overview: Biophysical and molecular biological methods.

Fromme P, Sali A.

Curr Opin Struct Biol. 2016 Oct;40:ix-xi. doi: 10.1016/j.sbi.2016.11.015. Epub 2016 Nov 28. No abstract available.

PMID:
27908508
41.

Clustering of disulfide-rich peptides provides scaffolds for hit discovery by phage display: application to interleukin-23.

Barkan DT, Cheng XL, Celino H, Tran TT, Bhandari A, Craik CS, Sali A, Smythe ML.

BMC Bioinformatics. 2016 Nov 23;17(1):481.

42.

Structure and Function of the Nuclear Pore Complex Cytoplasmic mRNA Export Platform.

Fernandez-Martinez J, Kim SJ, Shi Y, Upla P, Pellarin R, Gagnon M, Chemmama IE, Wang J, Nudelman I, Zhang W, Williams R, Rice WJ, Stokes DL, Zenklusen D, Chait BT, Sali A, Rout MP.

Cell. 2016 Nov 17;167(5):1215-1228.e25. doi: 10.1016/j.cell.2016.10.028. Epub 2016 Nov 10.

43.

A Residue-Resolved Bayesian Approach to Quantitative Interpretation of Hydrogen-Deuterium Exchange from Mass Spectrometry: Application to Characterizing Protein-Ligand Interactions.

Saltzberg DJ, Broughton HB, Pellarin R, Chalmers MJ, Espada A, Dodge JA, Pascal BD, Griffin PR, Humblet C, Sali A.

J Phys Chem B. 2017 Apr 20;121(15):3493-3501. doi: 10.1021/acs.jpcb.6b09358. Epub 2016 Dec 1.

44.

Comparative Protein Structure Modeling Using MODELLER.

Webb B, Sali A.

Curr Protoc Protein Sci. 2016 Nov 1;86:2.9.1-2.9.37. doi: 10.1002/cpps.20.

PMID:
27801516
45.

Insights into HIV-1 proviral transcription from integrative structure and dynamics of the Tat:AFF4:P-TEFb:TAR complex.

Schulze-Gahmen U, Echeverria I, Stjepanovic G, Bai Y, Lu H, Schneidman-Duhovny D, Doudna JA, Zhou Q, Sali A, Hurley JH.

Elife. 2016 Oct 12;5. pii: e15910. doi: 10.7554/eLife.15910.

46.

Ginger-Mechanism of action in chemotherapy-induced nausea and vomiting: A review.

Marx W, Ried K, McCarthy AL, Vitetta L, Sali A, McKavanagh D, Isenring L.

Crit Rev Food Sci Nutr. 2017 Jan 2;57(1):141-146. Review.

PMID:
25848702
47.

Simple rules for passive diffusion through the nuclear pore complex.

Timney BL, Raveh B, Mironska R, Trivedi JM, Kim SJ, Russel D, Wente SR, Sali A, Rout MP.

J Cell Biol. 2016 Oct 10;215(1):57-76. Epub 2016 Oct 3.

48.

Guinea Pig Prion Protein Supports Rapid Propagation of Bovine Spongiform Encephalopathy and Variant Creutzfeldt-Jakob Disease Prions.

Watts JC, Giles K, Saltzberg DJ, Dugger BN, Patel S, Oehler A, Bhardwaj S, Sali A, Prusiner SB.

J Virol. 2016 Oct 14;90(21):9558-9569. Print 2016 Nov 1.

49.

FuGeF: A Resource Bound Secure Forwarding Protocol for Wireless Sensor Networks.

Umar IA, Mohd Hanapi Z, Sali A, Zulkarnain ZA.

Sensors (Basel). 2016 Jun 22;16(6). pii: E943. doi: 10.3390/s16060943.

50.

Comparative Protein Structure Modeling Using MODELLER.

Webb B, Sali A.

Curr Protoc Bioinformatics. 2016 Jun 20;54:5.6.1-5.6.37. doi: 10.1002/cpbi.3.

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