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Items: 39

1.

Tensorial and bipartite block models for link prediction in layered networks and temporal networks.

Tarrés-Deulofeu M, Godoy-Lorite A, Guimerà R, Sales-Pardo M.

Phys Rev E. 2019 Mar;99(3-1):032307. doi: 10.1103/PhysRevE.99.032307.

PMID:
30999447
2.

CliqueMS: A computational tool for annotating in-source metabolite ions from LC-MS untargeted metabolomics data based on a coelution similarity network.

Senan O, Aguilar-Mogas A, Navarro M, Capellades J, Noon L, Burks D, Yanes O, Guimerà R, Sales-Pardo M.

Bioinformatics. 2019 Mar 23. pii: btz207. doi: 10.1093/bioinformatics/btz207. [Epub ahead of print]

PMID:
30903689
3.

Consistencies and inconsistencies between model selection and link prediction in networks.

Vallès-Català T, Peixoto TP, Sales-Pardo M, Guimerà R.

Phys Rev E. 2018 Jun;97(6-1):062316. doi: 10.1103/PhysRevE.97.062316.

PMID:
30011606
4.

Regulation of cell cycle progression by cell-cell and cell-matrix forces.

Uroz M, Wistorf S, Serra-Picamal X, Conte V, Sales-Pardo M, Roca-Cusachs P, Guimerà R, Trepat X.

Nat Cell Biol. 2018 Jun;20(6):646-654. doi: 10.1038/s41556-018-0107-2. Epub 2018 May 25.

5.

Leader evaluation and team cohesiveness in the process of team development: A matter of gender?

Rovira-Asenjo N, Pietraszkiewicz A, Sczesny S, Gumí T, Guimerà R, Sales-Pardo M.

PLoS One. 2017 Oct 23;12(10):e0186045. doi: 10.1371/journal.pone.0186045. eCollection 2017.

6.

The importance of being modular.

Sales-Pardo M.

Science. 2017 Jul 14;357(6347):128-129. doi: 10.1126/science.aan8075. No abstract available.

PMID:
28706024
7.

Bone Fusion in Normal and Pathological Development is Constrained by the Network Architecture of the Human Skull.

Esteve-Altava B, Vallès-Català T, Guimerà R, Sales-Pardo M, Rasskin-Gutman D.

Sci Rep. 2017 Jun 13;7(1):3376. doi: 10.1038/s41598-017-03196-9.

8.

iMet: A Network-Based Computational Tool To Assist in the Annotation of Metabolites from Tandem Mass Spectra.

Aguilar-Mogas A, Sales-Pardo M, Navarro M, Guimerà R, Yanes O.

Anal Chem. 2017 Mar 21;89(6):3474-3482. doi: 10.1021/acs.analchem.6b04512. Epub 2017 Mar 3.

PMID:
28221024
9.

Accurate and scalable social recommendation using mixed-membership stochastic block models.

Godoy-Lorite A, Guimerà R, Moore C, Sales-Pardo M.

Proc Natl Acad Sci U S A. 2016 Dec 13;113(50):14207-14212. Epub 2016 Nov 23.

10.

Inferring propagation paths for sparsely observed perturbations on complex networks.

Massucci FA, Wheeler J, Beltrán-Debón R, Joven J, Sales-Pardo M, Guimerà R.

Sci Adv. 2016 Oct 21;2(10):e1501638. eCollection 2016 Oct.

11.

Differences in Collaboration Patterns across Discipline, Career Stage, and Gender.

Zeng XH, Duch J, Sales-Pardo M, Moreira JA, Radicchi F, Ribeiro HV, Woodruff TK, Amaral LA.

PLoS Biol. 2016 Nov 4;14(11):e1002573. doi: 10.1371/journal.pbio.1002573. eCollection 2016 Nov.

12.

Long-Term Evolution of Email Networks: Statistical Regularities, Predictability and Stability of Social Behaviors.

Godoy-Lorite A, Guimerà R, Sales-Pardo M.

PLoS One. 2016 Jan 6;11(1):e0146113. doi: 10.1371/journal.pone.0146113. eCollection 2016.

13.

A comprehensive study on different modelling approaches to predict platelet deposition rates in a perfusion chamber.

Pallarès J, Senan O, Guimerà R, Vernet A, Aguilar-Mogas A, Vilahur G, Badimon L, Sales-Pardo M, Cito S.

Sci Rep. 2015 Sep 22;5:13606. doi: 10.1038/srep13606.

14.

The acute impact of polyphenols from Hibiscus sabdariffa in metabolic homeostasis: an approach combining metabolomics and gene-expression analyses.

Beltrán-Debón R, Rodríguez-Gallego E, Fernández-Arroyo S, Senan-Campos O, Massucci FA, Hernández-Aguilera A, Sales-Pardo M, Guimerà R, Camps J, Menendez JA, Joven J.

Food Funct. 2015 Sep;6(9):2957-66. doi: 10.1039/c5fo00696a.

PMID:
26234931
15.

Scaling and optimal synergy: Two principles determining microbial growth in complex media.

Massucci FA, Guimerà R, Amaral LA, Sales-Pardo M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Jun;91(6):062703. Epub 2015 Jun 8.

16.

Control of cell-cell forces and collective cell dynamics by the intercellular adhesome.

Bazellières E, Conte V, Elosegui-Artola A, Serra-Picamal X, Bintanel-Morcillo M, Roca-Cusachs P, Muñoz JJ, Sales-Pardo M, Guimerà R, Trepat X.

Nat Cell Biol. 2015 Apr;17(4):409-20. doi: 10.1038/ncb3135.

17.

A network inference method for large-scale unsupervised identification of novel drug-drug interactions.

Guimerà R, Sales-Pardo M.

PLoS Comput Biol. 2013;9(12):e1003374. doi: 10.1371/journal.pcbi.1003374. Epub 2013 Dec 5.

18.

Predicting future conflict between team-members with parameter-free models of social networks.

Rovira-Asenjo N, Gumí T, Sales-Pardo M, Guimerà R.

Sci Rep. 2013;3:1999. doi: 10.1038/srep01999.

19.

The impact of individual biases on consensus formation.

Sales-Pardo M, Diermeier D, Amaral LA.

PLoS One. 2013 May 28;8(5):e58989. doi: 10.1371/journal.pone.0058989. Print 2013.

20.

The possible role of resource requirements and academic career-choice risk on gender differences in publication rate and impact.

Duch J, Zeng XH, Sales-Pardo M, Radicchi F, Otis S, Woodruff TK, Nunes Amaral LA.

PLoS One. 2012;7(12):e51332. doi: 10.1371/journal.pone.0051332. Epub 2012 Dec 12. Erratum in: PLoS One. 2013;8(5). doi:10.1371/annotation/7f54a3e6-6dcf-4825-9eb9-201253cf1e25.

21.

Phenomenological model for predicting the catabolic potential of an arbitrary nutrient.

Seaver SM, Sales-Pardo M, Guimerà R, Amaral LA.

PLoS Comput Biol. 2012;8(11):e1002762. doi: 10.1371/journal.pcbi.1002762. Epub 2012 Nov 1.

22.

Predicting human preferences using the block structure of complex social networks.

Guimerà R, Llorente A, Moro E, Sales-Pardo M.

PLoS One. 2012;7(9):e44620. doi: 10.1371/journal.pone.0044620. Epub 2012 Sep 11.

23.

Evolutionary conservation of species' roles in food webs.

Stouffer DB, Sales-Pardo M, Sirer MI, Bascompte J.

Science. 2012 Mar 23;335(6075):1489-92. doi: 10.1126/science.1216556.

24.

Justice blocks and predictability of U.S. Supreme Court votes.

Guimerà R, Sales-Pardo M.

PLoS One. 2011;6(11):e27188. doi: 10.1371/journal.pone.0027188. Epub 2011 Nov 9.

25.
26.

Modular coherence of protein dynamics in yeast cell polarity system.

Gao JT, Guimerà R, Li H, Pinto IM, Sales-Pardo M, Wai SC, Rubinstein B, Li R.

Proc Natl Acad Sci U S A. 2011 May 3;108(18):7647-52. doi: 10.1073/pnas.1017567108. Epub 2011 Apr 18.

27.

Origin of compartmentalization in food webs.

Guimerà R, Stouffer DB, Sales-Pardo M, Leicht EA, Newman ME, Amaral LA.

Ecology. 2010 Oct;91(10):2941-51.

28.

Missing and spurious interactions and the reconstruction of complex networks.

Guimerà R, Sales-Pardo M.

Proc Natl Acad Sci U S A. 2009 Dec 29;106(52):22073-8. doi: 10.1073/pnas.0908366106. Epub 2009 Dec 14.

29.

Micro-bias and macro-performance.

Seaver SM, Moreira AA, Sales-Pardo M, Malmgren RD, Diermeier D, Amaral LA.

Eur Phys J B. 2009 Feb 1;67(3):369-375.

30.

From clean dishes to clean hands.

Kho A, Sales-Pardo M, Wilson J.

IEEE Eng Med Biol Mag. 2008 Nov-Dec;27(6):26-8. doi: 10.1109/MEMB.2008.929889. No abstract available.

PMID:
19004692
31.

Classes of complex networks defined by role-to-role connectivity profiles.

Guimerà R, Sales-Pardo M, Amaral LA.

Nat Phys. 2007;3(1):63-69.

32.

Effectiveness of journal ranking schemes as a tool for locating information.

Stringer MJ, Sales-Pardo M, Nunes Amaral LA.

PLoS One. 2008 Feb 27;3(2):e1683. doi: 10.1371/journal.pone.0001683.

33.

Module identification in bipartite and directed networks.

Guimerà R, Sales-Pardo M, Amaral LA.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Sep;76(3 Pt 2):036102. Epub 2007 Sep 6.

34.

Extracting the hierarchical organization of complex systems.

Sales-Pardo M, Guimerà R, Moreira AA, Amaral LA.

Proc Natl Acad Sci U S A. 2007 Sep 25;104(39):15224-9. Epub 2007 Sep 19. Erratum in: Proc Natl Acad Sci U S A. 2007 Nov 20;104(47):18874.

35.

Evolution of protein families: is it possible to distinguish between domains of life?

Sales-Pardo M, Chan AO, Amaral LA, Guimerà R.

Gene. 2007 Nov 1;402(1-2):81-93. Epub 2007 Aug 14.

36.

A network-based method for target selection in metabolic networks.

Guimerà R, Sales-Pardo M, Amaral LA.

Bioinformatics. 2007 Jul 1;23(13):1616-22. Epub 2007 Apr 26.

37.

Form follows function: the architecture of complex networks.

Guimerà R, Sales-Pardo M.

Mol Syst Biol. 2006;2:42. Epub 2006 Aug 1. No abstract available.

38.

Mesoscopic modeling for nucleic acid chain dynamics.

Sales-Pardo M, Guimerà R, Moreira AA, Widom J, Amaral LA.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 May;71(5 Pt 1):051902. Epub 2005 May 5.

39.

Modularity from fluctuations in random graphs and complex networks.

Guimerà R, Sales-Pardo M, Amaral LA.

Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Aug;70(2 Pt 2):025101. Epub 2004 Aug 19.

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