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Items: 1 to 50 of 145

1.

Proteomic and metabolomic analysis of desiccation tolerance in wheat young seedlings.

Koobaz P, Reza Ghaffari M, Heidari M, Mirzaei M, Ghanati F, Amirkhani A, Mortazavi SE, Moradi F, Hajirezaei MR, Salekdeh GH.

Plant Physiol Biochem. 2020 Jan;146:349-362. doi: 10.1016/j.plaphy.2019.11.017. Epub 2019 Nov 15.

PMID:
31786507
2.

Inhibition of Human Y Chromosome Gene, SRY, Promotes Naïve State of Human Pluripotent Stem Cells.

Taleahmad S, Alikhani M, Mollamohammadi S, Yousefi M, Taei A, Hassani SN, Baharvand H, Salekdeh GH.

J Proteome Res. 2019 Dec 6;18(12):4254-4261. doi: 10.1021/acs.jproteome.9b00396. Epub 2019 Oct 15.

PMID:
31580082
3.

Down-Regulation of a Male-Specific H3K4 Demethylase, KDM5D, Impairs Cardiomyocyte Differentiation.

Meyfour A, Pahlavan S, Ansari H, Baharvand H, Salekdeh GH.

J Proteome Res. 2019 Dec 6;18(12):4277-4282. doi: 10.1021/acs.jproteome.9b00395. Epub 2019 Oct 9.

PMID:
31560558
4.

Plant-Microbe Symbiosis: What Has Proteomics Taught Us?

Khatabi B, Gharechahi J, Ghaffari MR, Liu D, Haynes PA, McKay MJ, Mirzaei M, Salekdeh GH.

Proteomics. 2019 Aug;19(16):e1800105. doi: 10.1002/pmic.201800105. Review.

PMID:
31218790
5.

Salinity-associated microRNAs and their potential roles in mediating salt tolerance in rice colonized by the endophytic root fungus Piriformospora indica.

Kord H, Fakheri B, Ghabooli M, Solouki M, Emamjomeh A, Khatabi B, Sepehri M, Salekdeh GH, Ghaffari MR.

Funct Integr Genomics. 2019 Jul;19(4):659-672. doi: 10.1007/s10142-019-00671-6. Epub 2019 Mar 22.

PMID:
30903405
6.

Amyloid β Induces Early Changes in the Ribosomal Machinery, Cytoskeletal Organization and Oxidative Phosphorylation in Retinal Photoreceptor Cells.

Deng L, Pushpitha K, Joseph C, Gupta V, Rajput R, Chitranshi N, Dheer Y, Amirkhani A, Kamath K, Pascovici D, Wu JX, Salekdeh GH, Haynes PA, Graham SL, Gupta VK, Mirzaei M.

Front Mol Neurosci. 2019 Feb 22;12:24. doi: 10.3389/fnmol.2019.00024. eCollection 2019.

7.

Mining of camel rumen metagenome to identify novel alkali-thermostable xylanase capable of enhancing the recalcitrant lignocellulosic biomass conversion.

Ariaeenejad S, Maleki M, Hosseini E, Kavousi K, Moosavi-Movahedi AA, Salekdeh GH.

Bioresour Technol. 2019 Jun;281:343-350. doi: 10.1016/j.biortech.2019.02.059. Epub 2019 Feb 12.

PMID:
30831513
8.

Upregulation of Proteolytic Pathways and Altered Protein Biosynthesis Underlie Retinal Pathology in a Mouse Model of Alzheimer's Disease.

Mirzaei M, Pushpitha K, Deng L, Chitranshi N, Gupta V, Rajput R, Mangani AB, Dheer Y, Godinez A, McKay MJ, Kamath K, Pascovici D, Wu JX, Salekdeh GH, Karl T, Haynes PA, Graham SL, Gupta VK.

Mol Neurobiol. 2019 Sep;56(9):6017-6034. doi: 10.1007/s12035-019-1479-4. Epub 2019 Feb 1.

PMID:
30707393
9.

Preconditioning of sperm with sublethal nitrosative stress: a novel approach to improve frozen-thawed sperm function.

Hezavehei M, Kouchesfahani HM, Shahverdi A, Sharafi M, Salekdeh GH, Eftekhari-Yazdi P.

Reprod Biomed Online. 2019 Mar;38(3):413-425. doi: 10.1016/j.rbmo.2018.11.029. Epub 2019 Jan 8.

PMID:
30658893
10.

The Quest for Missing Proteins in Rice.

Rahiminejad M, Ledari MT, Mirzaei M, Ghorbanzadeh Z, Kavousi K, Ghaffari MR, Haynes PA, Komatsu S, Salekdeh GH.

Mol Plant. 2019 Jan 7;12(1):4-6. doi: 10.1016/j.molp.2018.11.009. Epub 2018 Dec 11. No abstract available.

11.

Identification and characterization of a novel thermostable xylanase from camel rumen metagenome.

Ariaeenejad S, Hosseini E, Maleki M, Kavousi K, Moosavi-Movahedi AA, Salekdeh GH.

Int J Biol Macromol. 2019 Apr 1;126:1295-1302. doi: 10.1016/j.ijbiomac.2018.12.041. Epub 2018 Dec 4.

PMID:
30529208
12.

200+ Protein Concentrations in Healthy Human Blood Plasma: Targeted Quantitative SRM SIS Screening of Chromosomes 18, 13, Y, and the Mitochondrial Chromosome Encoded Proteome.

Kopylov AT, Ponomarenko EA, Ilgisonis EV, Pyatnitskiy MA, Lisitsa AV, Poverennaya EV, Kiseleva OI, Farafonova TE, Tikhonova OV, Zavialova MG, Novikova SE, Moshkovskii SA, Radko SP, Morukov BV, Grigoriev AI, Paik YK, Salekdeh GH, Urbani A, Zgoda VG, Archakov AI.

J Proteome Res. 2019 Jan 4;18(1):120-129. doi: 10.1021/acs.jproteome.8b00391. Epub 2018 Dec 11.

PMID:
30480452
13.

Correction to: Efficient Differentiation of Human Embryonic Stem Cells Toward Dopaminergic Neurons Using Recombinant LMX1A Factor.

Fathi A, Rasouli H, Yeganeh M, Salekdeh GH, Baharvand H.

Mol Biotechnol. 2019 Jan;61(1):72. doi: 10.1007/s12033-018-0131-2.

PMID:
30390207
14.

The Art of Validating Quantitative Proteomics Data.

Handler DC, Pascovici D, Mirzaei M, Gupta V, Salekdeh GH, Haynes PA.

Proteomics. 2018 Dec;18(23):e1800222. doi: 10.1002/pmic.201800222. Epub 2018 Nov 25.

PMID:
30352137
15.

Loss of Shp2 Rescues BDNF/TrkB Signaling and Contributes to Improved Retinal Ganglion Cell Neuroprotection.

Chitranshi N, Dheer Y, Mirzaei M, Wu Y, Salekdeh GH, Abbasi M, Gupta V, Vander Wall R, You Y, Graham SL, Gupta V.

Mol Ther. 2019 Feb 6;27(2):424-441. doi: 10.1016/j.ymthe.2018.09.019. Epub 2018 Oct 4.

PMID:
30341011
16.

Distribution and development of molecularly distinct perineuronal nets in visual thalamus.

Sabbagh U, Monavarfeshani A, Su K, Zabet-Moghadam M, Cole J, Carnival E, Su J, Mirzaei M, Gupta V, Salekdeh GH, Fox MA.

J Neurochem. 2018 Dec;147(5):626-646. doi: 10.1111/jnc.14614. Epub 2018 Nov 26.

17.

Launching the C-HPP neXt-CP50 Pilot Project for Functional Characterization of Identified Proteins with No Known Function.

Paik YK, Lane L, Kawamura T, Chen YJ, Cho JY, LaBaer J, Yoo JS, Domont G, Corrales F, Omenn GS, Archakov A, Encarnación-Guevara S, Lui S, Salekdeh GH, Cho JY, Kim CY, Overall CM.

J Proteome Res. 2018 Dec 7;17(12):4042-4050. doi: 10.1021/acs.jproteome.8b00383. Epub 2018 Nov 29.

18.

Subcellular Proteome Landscape of Human Embryonic Stem Cells Revealed Missing Membrane Proteins.

Weldemariam MM, Han CL, Shekari F, Kitata RB, Chuang CY, Hsu WT, Kuo HC, Choong WK, Sung TY, He FC, Chung MCM, Salekdeh GH, Chen YJ.

J Proteome Res. 2018 Dec 7;17(12):4138-4151. doi: 10.1021/acs.jproteome.8b00407. Epub 2018 Sep 24.

PMID:
30203655
19.

A metagenomic analysis of the camel rumen's microbiome identifies the major microbes responsible for lignocellulose degradation and fermentation.

Gharechahi J, Salekdeh GH.

Biotechnol Biofuels. 2018 Aug 2;11:216. doi: 10.1186/s13068-018-1214-9. eCollection 2018.

20.

Transcriptomic analysis of Aegilops tauschii during long-term salinity stress.

Mansouri M, Naghavi MR, Alizadeh H, Mohammadi-Nejad G, Mousavi SA, Salekdeh GH, Tada Y.

Funct Integr Genomics. 2019 Jan;19(1):13-28. doi: 10.1007/s10142-018-0623-y. Epub 2018 Jun 21.

PMID:
29931612
21.

Discovery of Novel Cell Surface Markers for Purification of Embryonic Dopamine Progenitors for Transplantation in Parkinson's Disease Animal Models.

Fathi A, Mirzaei M, Dolatyar B, Sharifitabar M, Bayat M, Shahbazi E, Lee J, Javan M, Zhang SC, Gupta V, Lee B, Haynes PA, Baharvand H, Salekdeh GH.

Mol Cell Proteomics. 2018 Sep;17(9):1670-1684. doi: 10.1074/mcp.RA118.000809. Epub 2018 May 29.

22.

Distinct changes in the proteome profile of endometrial tissues in polycystic ovary syndrome compared with healthy fertile women.

Amjadi F, Mehdizadeh M, Ashrafi M, Nasrabadi D, Taleahmad S, Mirzaei M, Gupta V, Salekdeh GH, Aflatoonian R.

Reprod Biomed Online. 2018 Aug;37(2):184-200. doi: 10.1016/j.rbmo.2018.04.043. Epub 2018 Apr 21.

PMID:
29729850
23.

Prospective Isolation of ISL1+ Cardiac Progenitors from Human ESCs for Myocardial Infarction Therapy.

Ghazizadeh Z, Fattahi F, Mirzaei M, Bayersaikhan D, Lee J, Chae S, Hwang D, Byun K, Tabar MS, Taleahmad S, Mirshahvaladi S, Shabani P, Fonoudi H, Haynes PA, Baharvand H, Aghdami N, Evans T, Lee B, Salekdeh GH.

Stem Cell Reports. 2018 Mar 13;10(3):848-859. doi: 10.1016/j.stemcr.2018.01.037. Epub 2018 Mar 1.

24.

MicroRNA-340 inhibits the proliferation and promotes the apoptosis of colon cancer cells by modulating REV3L.

Arivazhagan R, Lee J, Bayarsaikhan D, Kwak P, Son M, Byun K, Salekdeh GH, Lee B.

Oncotarget. 2017 Dec 26;9(4):5155-5168. doi: 10.18632/oncotarget.23703. eCollection 2018 Jan 12.

25.

17th Chromosome-Centric Human Proteome Project Symposium in Tehran.

Meyfour A, Pahlavan S, Sobhanian H, Salekdeh GH.

Proteomics. 2018 Apr;18(7):e1800012. doi: 10.1002/pmic.201800012.

PMID:
29384269
26.

Small RNA Sequencing Reveals Dlk1-Dio3 Locus-Embedded MicroRNAs as Major Drivers of Ground-State Pluripotency.

Moradi S, Sharifi-Zarchi A, Ahmadi A, Mollamohammadi S, Stubenvoll A, Günther S, Salekdeh GH, Asgari S, Braun T, Baharvand H.

Stem Cell Reports. 2017 Dec 12;9(6):2081-2096. doi: 10.1016/j.stemcr.2017.10.009. Epub 2017 Nov 9.

27.

Age-related neurodegenerative disease associated pathways identified in retinal and vitreous proteome from human glaucoma eyes.

Mirzaei M, Gupta VB, Chick JM, Greco TM, Wu Y, Chitranshi N, Wall RV, Hone E, Deng L, Dheer Y, Abbasi M, Rezaeian M, Braidy N, You Y, Salekdeh GH, Haynes PA, Molloy MP, Martins R, Cristea IM, Gygi SP, Graham SL, Gupta VK.

Sci Rep. 2017 Oct 4;7(1):12685. doi: 10.1038/s41598-017-12858-7.

28.

Chromosome-Centric Human Proteome Project Allies with Developmental Biology: A Case Study of the Role of Y Chromosome Genes in Organ Development.

Meyfour A, Pooyan P, Pahlavan S, Rezaei-Tavirani M, Gourabi H, Baharvand H, Salekdeh GH.

J Proteome Res. 2017 Dec 1;16(12):4259-4272. doi: 10.1021/acs.jproteome.7b00446. Epub 2017 Oct 11. Review.

PMID:
28914051
29.

MicroRNAs regulate the main events in rice drought stress response by manipulating the water supply to shoots.

Fard EM, Bakhshi B, Farsi M, Kakhki AM, Nikpay N, Ebrahimi MA, Mardi M, Salekdeh GH.

Mol Biosyst. 2017 Oct 24;13(11):2289-2302. doi: 10.1039/c7mb00298j.

PMID:
28872648
30.

Y Chromosome Missing Protein, TBL1Y, May Play an Important Role in Cardiac Differentiation.

Meyfour A, Ansari H, Pahlavan S, Mirshahvaladi S, Rezaei-Tavirani M, Gourabi H, Baharvand H, Salekdeh GH.

J Proteome Res. 2017 Dec 1;16(12):4391-4402. doi: 10.1021/acs.jproteome.7b00391. Epub 2017 Sep 13.

PMID:
28853286
31.

Low Focal Adhesion Signaling Promotes Ground State Pluripotency of Mouse Embryonic Stem Cells.

Taleahmad S, Mirzaei M, Samadian A, Hassani SN, Haynes PA, Salekdeh GH, Baharvand H.

J Proteome Res. 2017 Oct 6;16(10):3585-3595. doi: 10.1021/acs.jproteome.7b00322. Epub 2017 Sep 13.

PMID:
28850235
32.

Drought responsive microRNAs in two barley cultivars differing in their level of sensitivity to drought stress.

Fard EM, Bakhshi B, Keshavarznia R, Nikpay N, Shahbazi M, Salekdeh GH.

Plant Physiol Biochem. 2017 Sep;118:121-129. doi: 10.1016/j.plaphy.2017.06.007. Epub 2017 Jun 7.

PMID:
28624683
33.

Machine Learning and Network Analysis of Molecular Dynamics Trajectories Reveal Two Chains of Red/Ox-specific Residue Interactions in Human Protein Disulfide Isomerase.

Karamzadeh R, Karimi-Jafari MH, Sharifi-Zarchi A, Chitsaz H, Salekdeh GH, Moosavi-Movahedi AA.

Sci Rep. 2017 Jun 16;7(1):3666. doi: 10.1038/s41598-017-03966-5.

34.

The contrasting microRNA content of a drought tolerant and a drought susceptible wheat cultivar.

Bakhshi B, Fard EM, Gharechahi J, Safarzadeh M, Nikpay N, Fotovat R, Azimi MR, Salekdeh GH.

J Plant Physiol. 2017 Sep;216:35-43. doi: 10.1016/j.jplph.2017.05.012. Epub 2017 May 21.

PMID:
28575745
35.

Transient Activation of Reprogramming Transcription Factors Using Protein Transduction Facilitates Conversion of Human Fibroblasts Toward Cardiomyocyte-Like Cells.

Ghazizadeh Z, Rassouli H, Fonoudi H, Alikhani M, Talkhabi M, Darbandi-Azar A, Chen S, Baharvand H, Aghdami N, Salekdeh GH.

Mol Biotechnol. 2017 Jun;59(6):207-220. doi: 10.1007/s12033-017-0007-x.

PMID:
28509990
36.

Proteome analysis of human embryonic stem cells organelles.

Shekari F, Nezari H, Larijani MR, Han CL, Baharvand H, Chen YJ, Salekdeh GH.

J Proteomics. 2017 Jun 6;162:108-118. doi: 10.1016/j.jprot.2017.04.017. Epub 2017 Apr 20.

PMID:
28435121
37.

Red/ox states of human protein disulfide isomerase regulate binding affinity of 17 beta-estradiol.

Karamzadeh R, Karimi-Jafari MH, Saboury AA, Salekdeh GH, Moosavi-Movahedi AA.

Arch Biochem Biophys. 2017 Apr 1;619:35-44. doi: 10.1016/j.abb.2017.02.010. Epub 2017 Feb 28.

PMID:
28257787
38.

Advanced glycation end-products produced systemically and by macrophages: A common contributor to inflammation and degenerative diseases.

Byun K, Yoo Y, Son M, Lee J, Jeong GB, Park YM, Salekdeh GH, Lee B.

Pharmacol Ther. 2017 Sep;177:44-55. doi: 10.1016/j.pharmthera.2017.02.030. Epub 2017 Feb 13. Review.

39.

Quantitative proteomic analysis of human testis reveals system-wide molecular and cellular pathways associated with non-obstructive azoospermia.

Alikhani M, Mirzaei M, Sabbaghian M, Parsamatin P, Karamzadeh R, Adib S, Sodeifi N, Gilani MAS, Zabet-Moghaddam M, Parker L, Wu Y, Gupta V, Haynes PA, Gourabi H, Baharvand H, Salekdeh GH.

J Proteomics. 2017 Jun 6;162:141-154. doi: 10.1016/j.jprot.2017.02.007. Epub 2017 Feb 15.

PMID:
28213128
40.

A Proteomics Approach to Discover Drought Tolerance Proteins in Wheat Pollen Grain at Meiosis Stage.

Fotovat R, Alikhani M, Valizadeh M, Mirzaei M, Salekdeh GH.

Protein Pept Lett. 2017;24(1):26-36. doi: 10.2174/0929866523666161130143446.

PMID:
27908260
41.

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses.

Paez-Espino D, Chen IA, Palaniappan K, Ratner A, Chu K, Szeto E, Pillay M, Huang J, Markowitz VM, Nielsen T, Huntemann M, K Reddy TB, Pavlopoulos GA, Sullivan MB, Campbell BJ, Chen F, McMahon K, Hallam SJ, Denef V, Cavicchioli R, Caffrey SM, Streit WR, Webster J, Handley KM, Salekdeh GH, Tsesmetzis N, Setubal JC, Pope PB, Liu WT, Rivers AR, Ivanova NN, Kyrpides NC.

Nucleic Acids Res. 2017 Jan 4;45(D1):D457-D465. doi: 10.1093/nar/gkw1030. Epub 2016 Oct 30.

42.

Two-dimensional blue native/SDS-PAGE analysis of whole cell lysate protein complexes of rice in response to salt stress.

Hashemi A, Gharechahi J, Nematzadeh G, Shekari F, Hosseini SA, Salekdeh GH.

J Plant Physiol. 2016 Aug 1;200:90-101. doi: 10.1016/j.jplph.2016.05.023. Epub 2016 Jun 22.

PMID:
27362847
43.

MicroRNA Signatures of Drought Signaling in Rice Root.

Bakhshi B, Mohseni Fard E, Nikpay N, Ebrahimi MA, Bihamta MR, Mardi M, Salekdeh GH.

PLoS One. 2016 Jun 8;11(6):e0156814. doi: 10.1371/journal.pone.0156814. eCollection 2016.

44.

Metabolic and transcriptional response of central metabolism affected by root endophytic fungus Piriformospora indica under salinity in barley.

Ghaffari MR, Ghabooli M, Khatabi B, Hajirezaei MR, Schweizer P, Salekdeh GH.

Plant Mol Biol. 2016 Apr;90(6):699-717. doi: 10.1007/s11103-016-0461-z. Epub 2016 Mar 7.

PMID:
26951140
45.

PlantPReS: A database for plant proteome response to stress.

Mousavi SA, Pouya FM, Ghaffari MR, Mirzaei M, Ghaffari A, Alikhani M, Ghareyazie M, Komatsu S, Haynes PA, Salekdeh GH.

J Proteomics. 2016 Jun 30;143:69-72. doi: 10.1016/j.jprot.2016.03.009. Epub 2016 Mar 3.

PMID:
26947550
46.

Comparison of the Proteome Profiling of Iranian isolates of Leishmania tropica, L. major and L. infantum by Two-Dimensional Electrophoresis (2-DE) and Mass-spectrometry.

Hajjaran H, Mohammadi Bazargani M, Mohebali M, Burchmore R, Salekdeh GH, Kazemi-Rad E, Khoramizadeh MR.

Iran J Parasitol. 2015 Oct-Dec;10(4):530-40.

47.

Nesterenkonia sp. strain F, a halophilic bacterium producing acetone, butanol, and ethanol under aerobic conditions.

Amiri H, Azarbaijani R, Parsa Yeganeh L, Shahzadeh Fazeli A, Tabatabaei M, Salekdeh GH, Karimi K.

Sci Rep. 2016 Jan 4;6:18408. doi: 10.1038/srep18408.

48.

Proteome Analysis of Ground State Pluripotency.

Taleahmad S, Mirzaei M, Parker LM, Hassani SN, Mollamohammadi S, Sharifi-Zarchi A, Haynes PA, Baharvand H, Salekdeh GH.

Sci Rep. 2015 Dec 16;5:17985. doi: 10.1038/srep17985.

49.

Comparative Proteomic Profiling of Leishmania tropica: Investigation of a Case Infected with Simultaneous Cutaneous and Viscerotropic Leishmaniasis by 2-Dimentional Electrophoresis and Mass Spectrometry.

Hajjaran H, Mousavi P, Burchmore R, Mohebali M, Mohammadi Bazargani M, Salekdeh GH, Kazemi-Rad E, Khoramizadeh MR.

Iran J Parasitol. 2015 Jul-Sep;10(3):366-80.

50.

Genome-Wide Analysis of Oceanimonas sp. GK1 Isolated from Gavkhouni Wetland (Iran) Demonstrates Presence of Genes for Virulence and Pathogenicity.

Parsa Yeganeh L, Azarbaijani R, Mousavi H, Shahzadeh Fazeli SA, Amoozgar MA, Salekdeh GH.

Cell J. 2015 Fall;17(3):451-60. Epub 2015 Oct 7.

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