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Items: 1 to 50 of 68

1.

Theoretical study on the microscopic mechanism of lignin solubilization in Keggin-type polyoxometalate ionic liquids.

Ju Z, Xiao W, Yao X, Tan X, Simmons BA, Sale KL, Sun N.

Phys Chem Chem Phys. 2020 Jan 17. doi: 10.1039/c9cp05339e. [Epub ahead of print]

PMID:
31950118
2.

Beyond the USMLE: The STAR Algorithm for Initial Residency Applicant Screening and Interview Selection.

Villwock JA, Hamill CS, Sale KA, Sykes KJ.

J Surg Res. 2019 Mar;235:447-452. doi: 10.1016/j.jss.2018.07.057. Epub 2018 Nov 19.

PMID:
30691828
3.

Rapid characterization of the activities of lignin-modifying enzymes based on nanostructure-initiator mass spectrometry (NIMS).

Deng K, Zeng J, Cheng G, Gao J, Sale KL, Simmons BA, Singh AK, Adams PD, Northen TR.

Biotechnol Biofuels. 2018 Sep 27;11:266. doi: 10.1186/s13068-018-1261-2. eCollection 2018.

4.

Tinnitus perception in patients after vagal nerve stimulator implantation for epilepsy.

Wichova H, Alvi SA, Shew M, Lin J, Sale K, Larsen C, Staecker H.

Am J Otolaryngol. 2018 Sep - Oct;39(5):599-602. doi: 10.1016/j.amjoto.2018.07.009. Epub 2018 Jul 11.

PMID:
30025741
5.

Engineering glycoside hydrolase stability by the introduction of zinc binding.

Ellinghaus TL, Pereira JH, McAndrew RP, Welner DH, DeGiovanni AM, Guenther JM, Tran HM, Feldman T, Simmons BA, Sale KL, Adams PD.

Acta Crystallogr D Struct Biol. 2018 Jul 1;74(Pt 7):702-710. doi: 10.1107/S2059798318006678. Epub 2018 Jun 27.

6.

Structure-based Engineering of a Plant-Fungal Hybrid Peroxidase for Enhanced Temperature and pH Tolerance.

Kohler AC, Simmons BA, Sale KL.

Cell Chem Biol. 2018 Aug 16;25(8):974-983.e3. doi: 10.1016/j.chembiol.2018.04.014. Epub 2018 May 24.

7.

Expression of naturally ionic liquid-tolerant thermophilic cellulases in Aspergillus niger.

Amaike Campen S, Lynn J, Sibert SJ, Srikrishnan S, Phatale P, Feldman T, Guenther JM, Hiras J, Tran YTA, Singer SW, Adams PD, Sale KL, Simmons BA, Baker SE, Magnuson JK, Gladden JM.

PLoS One. 2017 Dec 27;12(12):e0189604. doi: 10.1371/journal.pone.0189604. eCollection 2017.

8.

Rhodosporidium toruloides: a new platform organism for conversion of lignocellulose into terpene biofuels and bioproducts.

Yaegashi J, Kirby J, Ito M, Sun J, Dutta T, Mirsiaghi M, Sundstrom ER, Rodriguez A, Baidoo E, Tanjore D, Pray T, Sale K, Singh S, Keasling JD, Simmons BA, Singer SW, Magnuson JK, Arkin AP, Skerker JM, Gladden JM.

Biotechnol Biofuels. 2017 Oct 23;10:241. doi: 10.1186/s13068-017-0927-5. eCollection 2017.

9.

Rhorix: An interface between quantum chemical topology and the 3D graphics program blender.

Mills MJL, Sale KL, Simmons BA, Popelier PLA.

J Comput Chem. 2017 Nov 5;38(29):2538-2552. doi: 10.1002/jcc.25054. Epub 2017 Aug 31.

10.

Reply to Kiser: Dioxygen binding in NOV1 crystal structures.

McAndrew RP, Sathitsuksanoh N, Mbughuni MM, Heins RA, Pereira JH, George A, Sale KL, Fox BG, Simmons BA, Adams PD.

Proc Natl Acad Sci U S A. 2017 Jul 25;114(30):E6029-E6030. doi: 10.1073/pnas.1708124114. Epub 2017 Jul 5. No abstract available.

11.

Parametric study for the optimization of ionic liquid pretreatment of corn stover.

Papa G, Feldman T, Sale KL, Adani F, Singh S, Simmons BA.

Bioresour Technol. 2017 Oct;241:627-637. doi: 10.1016/j.biortech.2017.05.167. Epub 2017 May 30.

PMID:
28605727
12.

Structure of aryl O-demethylase offers molecular insight into a catalytic tyrosine-dependent mechanism.

Kohler AC, Mills MJL, Adams PD, Simmons BA, Sale KL.

Proc Natl Acad Sci U S A. 2017 Apr 18;114(16):E3205-E3214. doi: 10.1073/pnas.1619263114. Epub 2017 Apr 3.

13.

Structure and mechanism of NOV1, a resveratrol-cleaving dioxygenase.

McAndrew RP, Sathitsuksanoh N, Mbughuni MM, Heins RA, Pereira JH, George A, Sale KL, Fox BG, Simmons BA, Adams PD.

Proc Natl Acad Sci U S A. 2016 Dec 13;113(50):14324-14329. Epub 2016 Nov 30.

14.

A novel approach to excision of distal tracheal granulation tissue in tracheostomy patients with difficult anatomy.

Rasband-Lindquist A, Sale K.

Ear Nose Throat J. 2016 Oct-Nov;95(10-11):454-456.

PMID:
27792824
15.

Examining Escherichia coli glycolytic pathways, catabolite repression, and metabolite channeling using Δpfk mutants.

Hollinshead WD, Rodriguez S, Martin HG, Wang G, Baidoo EE, Sale KL, Keasling JD, Mukhopadhyay A, Tang YJ.

Biotechnol Biofuels. 2016 Oct 10;9:212. eCollection 2016.

16.

Changes in the Structure of the Microbial Community Associated with Nannochloropsis salina following Treatments with Antibiotics and Bioactive Compounds.

Geng H, Tran-Gyamfi MB, Lane TW, Sale KL, Yu ET.

Front Microbiol. 2016 Jul 26;7:1155. doi: 10.3389/fmicb.2016.01155. eCollection 2016.

17.

Introduction of New Technologies in Orthopaedic Surgery.

Goodman SB, Mihalko WM, Anderson PA, Sale K, Bozic KJ.

JBJS Rev. 2016 May 24;4(5). pii: 01874474-201605000-00004. doi: 10.2106/JBJS.RVW.O.00067.

PMID:
27490218
18.

Longitudinal Analysis of Microbiota in Microalga Nannochloropsis salina Cultures.

Geng H, Sale KL, Tran-Gyamfi MB, Lane TW, Yu ET.

Microb Ecol. 2016 Jul;72(1):14-24. doi: 10.1007/s00248-016-0746-4. Epub 2016 Mar 8.

PMID:
26956183
19.

Structural and Biochemical Characterization of the Early and Late Enzymes in the Lignin β-Aryl Ether Cleavage Pathway from Sphingobium sp. SYK-6.

Pereira JH, Heins RA, Gall DL, McAndrew RP, Deng K, Holland KC, Donohue TJ, Noguera DR, Simmons BA, Sale KL, Ralph J, Adams PD.

J Biol Chem. 2016 May 6;291(19):10228-38. doi: 10.1074/jbc.M115.700427. Epub 2016 Mar 3.

20.

Structural Basis of Stereospecificity in the Bacterial Enzymatic Cleavage of β-Aryl Ether Bonds in Lignin.

Helmich KE, Pereira JH, Gall DL, Heins RA, McAndrew RP, Bingman C, Deng K, Holland KC, Noguera DR, Simmons BA, Sale KL, Ralph J, Donohue TJ, Adams PD, Phillips GN Jr.

J Biol Chem. 2016 Mar 4;291(10):5234-46. doi: 10.1074/jbc.M115.694307. Epub 2015 Dec 4.

21.

Development of a High Throughput Platform for Screening Glycoside Hydrolases Based on Oxime-NIMS.

Deng K, Guenther JM, Gao J, Bowen BP, Tran H, Reyes-Ortiz V, Cheng X, Sathitsuksanoh N, Heins R, Takasuka TE, Bergeman LF, Geertz-Hansen H, Deutsch S, Loqué D, Sale KL, Simmons BA, Adams PD, Singh AK, Fox BG, Northen TR.

Front Bioeng Biotechnol. 2015 Oct 13;3:153. doi: 10.3389/fbioe.2015.00153. eCollection 2015.

22.

Comparison of different pretreatments for the production of bioethanol and biomethane from corn stover and switchgrass.

Papa G, Rodriguez S, George A, Schievano A, Orzi V, Sale KL, Singh S, Adani F, Simmons BA.

Bioresour Technol. 2015 May;183:101-10. doi: 10.1016/j.biortech.2015.01.121. Epub 2015 Feb 11.

PMID:
25725408
23.

Phylogenomically guided identification of industrially relevant GH1 β-glucosidases through DNA synthesis and nanostructure-initiator mass spectrometry.

Heins RA, Cheng X, Nath S, Deng K, Bowen BP, Chivian DC, Datta S, Friedland GD, D'Haeseleer P, Wu D, Tran-Gyamfi M, Scullin CS, Singh S, Shi W, Hamilton MG, Bendall ML, Sczyrba A, Thompson J, Feldman T, Guenther JM, Gladden JM, Cheng JF, Adams PD, Rubin EM, Simmons BA, Sale KL, Northen TR, Deutsch S.

ACS Chem Biol. 2014 Sep 19;9(9):2082-91. doi: 10.1021/cb500244v. Epub 2014 Jul 17.

24.

Rapid kinetic characterization of glycosyl hydrolases based on oxime derivatization and nanostructure-initiator mass spectrometry (NIMS).

Deng K, Takasuka TE, Heins R, Cheng X, Bergeman LF, Shi J, Aschenbrener R, Deutsch S, Singh S, Sale KL, Simmons BA, Adams PD, Singh AK, Fox BG, Northen TR.

ACS Chem Biol. 2014 Jul 18;9(7):1470-9. doi: 10.1021/cb5000289. Epub 2014 May 12.

PMID:
24819174
25.

Evolutionary history underlies plant physiological responses to global change since the last glacial maximum.

Becklin KM, Medeiros JS, Sale KR, Ward JK.

Ecol Lett. 2014 Jun;17(6):691-9. doi: 10.1111/ele.12271. Epub 2014 Mar 18.

26.

Discovery and characterization of ionic liquid-tolerant thermophilic cellulases from a switchgrass-adapted microbial community.

Gladden JM, Park JI, Bergmann J, Reyes-Ortiz V, D'haeseleer P, Quirino BF, Sale KL, Simmons BA, Singer SW.

Biotechnol Biofuels. 2014 Jan 29;7(1):15. doi: 10.1186/1754-6834-7-15.

27.

Improved activity of a thermophilic cellulase, Cel5A, from Thermotoga maritima on ionic liquid pretreated switchgrass.

Chen Z, Pereira JH, Liu H, Tran HM, Hsu NS, Dibble D, Singh S, Adams PD, Sapra R, Hadi MZ, Simmons BA, Sale KL.

PLoS One. 2013 Nov 14;8(11):e79725. doi: 10.1371/journal.pone.0079725. eCollection 2013.

28.

Scale-up and evaluation of high solid ionic liquid pretreatment and enzymatic hydrolysis of switchgrass.

Li C, Tanjore D, He W, Wong J, Gardner JL, Sale KL, Simmons BA, Singh S.

Biotechnol Biofuels. 2013 Oct 25;6(1):154. doi: 10.1186/1754-6834-6-154.

29.

Addition of a carbohydrate-binding module enhances cellulase penetration into cellulose substrates.

Reyes-Ortiz V, Heins RA, Cheng G, Kim EY, Vernon BC, Elandt RB, Adams PD, Sale KL, Hadi MZ, Simmons BA, Kent MS, Tullman-Ercek D.

Biotechnol Biofuels. 2013 Jul 3;6(1):93. doi: 10.1186/1754-6834-6-93.

30.

From soil to structure, a novel dimeric β-glucosidase belonging to glycoside hydrolase family 3 isolated from compost using metagenomic analysis.

McAndrew RP, Park JI, Heins RA, Reindl W, Friedland GD, D'haeseleer P, Northen T, Sale KL, Simmons BA, Adams PD.

J Biol Chem. 2013 May 24;288(21):14985-92. doi: 10.1074/jbc.M113.458356. Epub 2013 Apr 11.

31.

Production and extraction of sugars from switchgrass hydrolyzed in ionic liquids.

Sun N, Liu H, Sathitsuksanoh N, Stavila V, Sawant M, Bonito A, Tran K, George A, Sale KL, Singh S, Simmons BA, Holmes BM.

Biotechnol Biofuels. 2013 Mar 20;6(1):39. doi: 10.1186/1754-6834-6-39.

32.

Microfluidically-unified cell culture, sample preparation, imaging and flow cytometry for measurement of cell signaling pathways with single cell resolution.

Wu M, Perroud TD, Srivastava N, Branda CS, Sale KL, Carson BD, Patel KD, Branda SS, Singh AK.

Lab Chip. 2012 Aug 21;12(16):2823-31. doi: 10.1039/c2lc40344g. Epub 2012 Jul 10.

PMID:
22777012
33.

A thermophilic ionic liquid-tolerant cellulase cocktail for the production of cellulosic biofuels.

Park JI, Steen EJ, Burd H, Evans SS, Redding-Johnson AM, Batth T, Benke PI, D'haeseleer P, Sun N, Sale KL, Keasling JD, Lee TS, Petzold CJ, Mukhopadhyay A, Singer SW, Simmons BA, Gladden JM.

PLoS One. 2012;7(5):e37010. doi: 10.1371/journal.pone.0037010. Epub 2012 May 23.

34.

Tracing determinants of dual substrate specificity in glycoside hydrolase family 5.

Chen Z, Friedland GD, Pereira JH, Reveco SA, Chan R, Park JI, Thelen MP, Adams PD, Arkin AP, Keasling JD, Blanch HW, Simmons BA, Sale KL, Chivian D, Chhabra SR.

J Biol Chem. 2012 Jul 20;287(30):25335-43. doi: 10.1074/jbc.M112.362640. Epub 2012 May 29.

35.

Simulations reveal conformational changes of methylhydroxyl groups during dissolution of cellulose Iβ in ionic liquid 1-ethyl-3-methylimidazolium acetate.

Liu H, Cheng G, Kent M, Stavila V, Simmons BA, Sale KL, Singh S.

J Phys Chem B. 2012 Jul 19;116(28):8131-8. doi: 10.1021/jp301673h. Epub 2012 Jul 10.

PMID:
22574852
36.

Interactions of endoglucanases with amorphous cellulose films resolved by neutron reflectometry and quartz crystal microbalance with dissipation monitoring.

Cheng G, Datta S, Liu Z, Wang C, Murton JK, Brown PA, Jablin MS, Dubey M, Majewski J, Halbert CE, Browning JF, Esker AR, Watson BJ, Zhang H, Hutcheson SW, Huber DL, Sale KL, Simmons BA, Kent MS.

Langmuir. 2012 Jun 5;28(22):8348-58. doi: 10.1021/la300955q. Epub 2012 May 17.

PMID:
22554348
37.

A 7-year review of the safety of tonsillectomy during short-term medical mission trips.

Sykes KJ, Le PT, Sale KA, Nicklaus PJ.

Otolaryngol Head Neck Surg. 2012 May;146(5):752-6. doi: 10.1177/0194599812437317. Epub 2012 Feb 14.

PMID:
22337727
38.

Implementing a genomic data management system using iRODS in the Wellcome Trust Sanger Institute.

Chiang GT, Clapham P, Qi G, Sale K, Coates G.

BMC Bioinformatics. 2011 Sep 9;12:361. doi: 10.1186/1471-2105-12-361.

39.

Molecular dynamics study of polysaccharides in binary solvent mixtures of an ionic liquid and water.

Liu H, Sale KL, Simmons BA, Singh S.

J Phys Chem B. 2011 Sep 1;115(34):10251-8. doi: 10.1021/jp111738q. Epub 2011 Aug 9.

PMID:
21827163
40.

Neutron reflectometry and QCM-D study of the interaction of cellulases with films of amorphous cellulose.

Cheng G, Liu Z, Murton JK, Jablin M, Dubey M, Majewski J, Halbert C, Browning J, Ankner J, Akgun B, Wang C, Esker AR, Sale KL, Simmons BA, Kent MS.

Biomacromolecules. 2011 Jun 13;12(6):2216-24. doi: 10.1021/bm200305u. Epub 2011 May 23.

PMID:
21553874
41.

Enzymatic hydrolysis of cellulose by the cellobiohydrolase domain of CelB from the hyperthermophilic bacterium Caldicellulosiruptor saccharolyticus.

Park JI, Kent MS, Datta S, Holmes BM, Huang Z, Simmons BA, Sale KL, Sapra R.

Bioresour Technol. 2011 May;102(10):5988-94. doi: 10.1016/j.biortech.2011.02.036. Epub 2011 Feb 13.

PMID:
21421309
42.

Molecular simulations provide new insights into the role of the accessory immunoglobulin-like domain of Cel9A.

Liu H, Pereira JH, Adams PD, Sapra R, Simmons BA, Sale KL.

FEBS Lett. 2010 Aug 4;584(15):3431-5. doi: 10.1016/j.febslet.2010.06.041. Epub 2010 Jul 6. Erratum in: FEBS Lett. 2010 Aug 20;584(16):3672.

43.

Biochemical characterization and crystal structure of endoglucanase Cel5A from the hyperthermophilic Thermotoga maritima.

Pereira JH, Chen Z, McAndrew RP, Sapra R, Chhabra SR, Sale KL, Simmons BA, Adams PD.

J Struct Biol. 2010 Dec;172(3):372-9. doi: 10.1016/j.jsb.2010.06.018. Epub 2010 Jul 3.

PMID:
20599513
44.

Metamorphic response of the CLIC1 chloride intracellular ion channel protein upon membrane interaction.

Goodchild SC, Howell MW, Littler DR, Mandyam RA, Sale KL, Mazzanti M, Breit SN, Curmi PM, Brown LJ.

Biochemistry. 2010 Jun 29;49(25):5278-89. doi: 10.1021/bi100111c.

PMID:
20507120
45.

Understanding the interactions of cellulose with ionic liquids: a molecular dynamics study.

Liu H, Sale KL, Holmes BM, Simmons BA, Singh S.

J Phys Chem B. 2010 Apr 1;114(12):4293-301. doi: 10.1021/jp9117437.

PMID:
20218725
46.

The collaboratory for MS3D: a new cyberinfrastructure for the structural elucidation of biological macromolecules and their assemblies using mass spectrometry-based approaches.

Yu ET, Hawkins A, Kuntz ID, Rahn LA, Rothfuss A, Sale K, Young MM, Yang CL, Pancerella CM, Fabris D.

J Proteome Res. 2008 Nov;7(11):4848-57. doi: 10.1021/pr800443f. Epub 2008 Sep 26.

47.

Genome scale enzyme-metabolite and drug-target interaction predictions using the signature molecular descriptor.

Faulon JL, Misra M, Martin S, Sale K, Sapra R.

Bioinformatics. 2008 Jan 15;24(2):225-33. Epub 2007 Nov 23.

PMID:
18037612
48.

The conduct of clinical research under the HIPAA Privacy Rule.

McMaster WC, Sale K, Andersson GB, Bostrom MP, Gebhardt MC, Trippel SB, Clark DC.

J Bone Joint Surg Am. 2006 Dec;88(12):2765-70. No abstract available.

PMID:
17142429
49.

Structure and dynamics of dark-state bovine rhodopsin revealed by chemical cross-linking and high-resolution mass spectrometry.

Jacobsen RB, Sale KL, Ayson MJ, Novak P, Hong J, Lane P, Wood NL, Kruppa GH, Young MM, Schoeniger JS.

Protein Sci. 2006 Jun;15(6):1303-17.

50.

Calculating slow-motional electron paramagnetic resonance spectra from molecular dynamics using a diffusion operator approach.

Budil DE, Sale KL, Khairy KA, Fajer PG.

J Phys Chem A. 2006 Mar 16;110(10):3703-13.

PMID:
16526654

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