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Items: 33


Correction to: Phage-centric ecological interactions in aquatic ecosystems revealed through ultra-deep metagenomics.

Kavagutti VS, Andrei AŞ, Mehrshad M, Salcher MM, Ghai R.

Microbiome. 2020 Mar 19;8(1):40. doi: 10.1186/s40168-020-00828-7.


Bacterial and Eukaryotic Small-Subunit Amplicon Data Do Not Provide a Quantitative Picture of Microbial Communities, but They Are Reliable in the Context of Ecological Interpretations.

Piwosz K, Shabarova T, Pernthaler J, Posch T, Šimek K, Porcal P, Salcher MM.

mSphere. 2020 Mar 4;5(2). pii: e00052-20. doi: 10.1128/mSphere.00052-20.


Phage-centric ecological interactions in aquatic ecosystems revealed through ultra-deep metagenomics.

Kavagutti VS, Andrei AŞ, Mehrshad M, Salcher MM, Ghai R.

Microbiome. 2019 Oct 20;7(1):135. doi: 10.1186/s40168-019-0752-0. Erratum in: Microbiome. 2020 Mar 19;8(1):40.


Evolution in action: habitat transition from sediment to the pelagial leads to genome streamlining in Methylophilaceae.

Salcher MM, Schaefle D, Kaspar M, Neuenschwander SM, Ghai R.

ISME J. 2019 Nov;13(11):2764-2777. doi: 10.1038/s41396-019-0471-3. Epub 2019 Jul 10.


Casting light on Asgardarchaeota metabolism in a sunlit microoxic niche.

Bulzu PA, Andrei AŞ, Salcher MM, Mehrshad M, Inoue K, Kandori H, Beja O, Ghai R, Banciu HL.

Nat Microbiol. 2019 Jul;4(7):1129-1137. doi: 10.1038/s41564-019-0404-y. Epub 2019 Apr 1.


The mesopelagic anoxic Black Sea as an unexpected habitat for Synechococcus challenges our understanding of global "deep red fluorescence".

Callieri C, Slabakova V, Dzhembekova N, Slabakova N, Peneva E, Cabello-Yeves PJ, Di Cesare A, Eckert EM, Bertoni R, Corno G, Salcher MM, Kamburska L, Bertoni F, Moncheva S.

ISME J. 2019 Jul;13(7):1676-1687. doi: 10.1038/s41396-019-0378-z. Epub 2019 Feb 28.


Niche-directed evolution modulates genome architecture in freshwater Planctomycetes.

Andrei AŞ, Salcher MM, Mehrshad M, Rychtecký P, Znachor P, Ghai R.

ISME J. 2019 Apr;13(4):1056-1071. doi: 10.1038/s41396-018-0332-5. Epub 2019 Jan 4.


The Broad Habitat Spectrum of the CL500-11 Lineage (Phylum Chloroflexi), a Dominant Bacterioplankton in Oxygenated Hypolimnia of Deep Freshwater Lakes.

Okazaki Y, Salcher MM, Callieri C, Nakano SI.

Front Microbiol. 2018 Nov 27;9:2891. doi: 10.3389/fmicb.2018.02891. eCollection 2018.


Hidden in plain sight-highly abundant and diverse planktonic freshwater Chloroflexi.

Mehrshad M, Salcher MM, Okazaki Y, Nakano SI, Šimek K, Andrei AS, Ghai R.

Microbiome. 2018 Oct 2;6(1):176. doi: 10.1186/s40168-018-0563-8.


Autotrophic carbon fixation strategies used by nitrifying prokaryotes in freshwater lakes.

Alfreider A, Grimus V, Luger M, Ekblad A, Salcher MM, Summerer M.

FEMS Microbiol Ecol. 2018 Oct 1;94(10). doi: 10.1093/femsec/fiy163.


Synchrony of Eukaryotic and Prokaryotic Planktonic Communities in Three Seasonally Sampled Austrian Lakes.

Bock C, Salcher M, Jensen M, Pandey RV, Boenigk J.

Front Microbiol. 2018 Jun 15;9:1290. doi: 10.3389/fmicb.2018.01290. eCollection 2018.


Genome analysis of the freshwater planktonic Vulcanococcus limneticus sp. nov. reveals horizontal transfer of nitrogenase operon and alternative pathways of nitrogen utilization.

Di Cesare A, Cabello-Yeves PJ, Chrismas NAM, Sánchez-Baracaldo P, Salcher MM, Callieri C.

BMC Genomics. 2018 Apr 16;19(1):259. doi: 10.1186/s12864-018-4648-3.


Cryptophyta as major bacterivores in freshwater summer plankton.

Grujcic V, Nuy JK, Salcher MM, Shabarova T, Kasalicky V, Boenigk J, Jensen M, Simek K.

ISME J. 2018 Jun;12(7):1668-1681. doi: 10.1038/s41396-018-0057-5. Epub 2018 Feb 20.


Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria.

Neuenschwander SM, Ghai R, Pernthaler J, Salcher MM.

ISME J. 2018 Jan;12(1):185-198. doi: 10.1038/ismej.2017.156. Epub 2017 Oct 13.


CO2 assimilation strategies in stratified lakes: Diversity and distribution patterns of chemolithoautotrophs.

Alfreider A, Baumer A, Bogensperger T, Posch T, Salcher MM, Summerer M.

Environ Microbiol. 2017 Jul;19(7):2754-2768. doi: 10.1111/1462-2920.13786. Epub 2017 May 29.


Avoidable costs of stenting for aortic coarctation in the United Kingdom: an economic model.

Salcher M, Mcguire A, Muthurangu V, Kelm M, Kuehne T, Naci H; CARDIOPROOF.

BMC Health Serv Res. 2017 Apr 10;17(1):258. doi: 10.1186/s12913-017-2215-2.


Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach.

Shabarova T, Kasalický V, Šimek K, Nedoma J, Znachor P, Posch T, Pernthaler J, Salcher MM.

Environ Microbiol. 2017 Mar;19(3):1296-1309. doi: 10.1111/1462-2920.13663. Epub 2017 Feb 6.


Bicuspid aortic valve disease: systematic review and meta-analysis of surgical aortic valve repair.

Salcher M, Naci H, Pender S, Kuehne T; CARDIOPROOF Consortium, Kelm M.

Open Heart. 2016 Dec 16;3(2):e000502. doi: 10.1136/openhrt-2016-000502. eCollection 2016.


Ecological Traits of the Algae-Bearing Tetrahymena utriculariae (Ciliophora) from Traps of the Aquatic Carnivorous Plant Utricularia reflexa.

Šimek K, Pitsch G, Salcher MM, Sirová D, Shabarova T, Adamec L, Posch T.

J Eukaryot Microbiol. 2017 May;64(3):336-348. doi: 10.1111/jeu.12368. Epub 2016 Sep 24.


Balloon Dilatation and Stenting for Aortic Coarctation: A Systematic Review and Meta-Analysis.

Salcher M, Naci H, Law TJ, Kuehne T, Schubert S, Kelm M; Cardioproof Consortium.

Circ Cardiovasc Interv. 2016 Jun;9(6). pii: e003153. doi: 10.1161/CIRCINTERVENTIONS.115.003153. Review.


Interspecific competition and protistan grazing affect the coexistence of freshwater betaproteobacterial strains.

Salcher MM, Ewert C, Šimek K, Kasalický V, Posch T.

FEMS Microbiol Ecol. 2016 Feb;92(2). pii: fiv156. doi: 10.1093/femsec/fiv156. Epub 2015 Dec 9.


Ecology and Distribution of Thaumarchaea in the Deep Hypolimnion of Lake Maggiore.

Coci M, Odermatt N, Salcher MM, Pernthaler J, Corno G.

Archaea. 2015 Aug 25;2015:590434. doi: 10.1155/2015/590434. eCollection 2015.


Bacterial diversity and composition in the fluid of pitcher plants of the genus Nepenthes.

Takeuchi Y, Chaffron S, Salcher MM, Shimizu-Inatsugi R, Kobayashi MJ, Diway B, von Mering C, Pernthaler J, Shimizu KK.

Syst Appl Microbiol. 2015 Jul;38(5):330-9. doi: 10.1016/j.syapm.2015.05.006. Epub 2015 Jun 16.


The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign.

Salcher MM, Neuenschwander SM, Posch T, Pernthaler J.

ISME J. 2015 Nov;9(11):2442-53. doi: 10.1038/ismej.2015.55. Epub 2015 May 5.


Fluorescence in situ hybridization and sequential catalyzed reporter deposition (2C-FISH) for the flow cytometric sorting of freshwater ultramicrobacteria.

Neuenschwander SM, Salcher MM, Pernthaler J.

Front Microbiol. 2015 Mar 31;6:247. doi: 10.3389/fmicb.2015.00247. eCollection 2015.


Ménage-à-trois: the amoeba Nuclearia sp. from Lake Zurich with its ecto- and endosymbiotic bacteria.

Dirren S, Salcher MM, Blom JF, Schweikert M, Posch T.

Protist. 2014 Sep;165(5):745-58. doi: 10.1016/j.protis.2014.08.004. Epub 2014 Aug 28.


Seasonal growth potential of rare lake water bacteria suggest their disproportional contribution to carbon fluxes.

Neuenschwander SM, Pernthaler J, Posch T, Salcher MM.

Environ Microbiol. 2015 Mar;17(3):781-95. doi: 10.1111/1462-2920.12520. Epub 2014 Jun 30.


In situ substrate preferences of abundant bacterioplankton populations in a prealpine freshwater lake.

Salcher MM, Posch T, Pernthaler J.

ISME J. 2013 May;7(5):896-907. doi: 10.1038/ismej.2012.162. Epub 2012 Dec 13.


Rapid successions affect microbial N-acetyl-glucosamine uptake patterns during a lacustrine spring phytoplankton bloom.

Eckert EM, Salcher MM, Posch T, Eugster B, Pernthaler J.

Environ Microbiol. 2012 Mar;14(3):794-806. doi: 10.1111/j.1462-2920.2011.02639.x. Epub 2011 Nov 14.


In situ enzyme activity in the dissolved and particulate fraction of the fluid from four pitcher plant species of the genus Nepenthes.

Takeuchi Y, Salcher MM, Ushio M, Shimizu-Inatsugi R, Kobayashi MJ, Diway B, von Mering C, Pernthaler J, Shimizu KK.

PLoS One. 2011;6(9):e25144. doi: 10.1371/journal.pone.0025144. Epub 2011 Sep 16.


Seasonal bloom dynamics and ecophysiology of the freshwater sister clade of SAR11 bacteria 'that rule the waves' (LD12).

Salcher MM, Pernthaler J, Posch T.

ISME J. 2011 Aug;5(8):1242-52. doi: 10.1038/ismej.2011.8. Epub 2011 Mar 17.


Spatio-temporal niche separation of planktonic Betaproteobacteria in an oligo-mesotrophic lake.

Salcher MM, Pernthaler J, Zeder M, Psenner R, Posch T.

Environ Microbiol. 2008 Aug;10(8):2074-86. doi: 10.1111/j.1462-2920.2008.01628.x. Epub 2008 Apr 21.


Modulation of microbial predator-prey dynamics by phosphorus availability: growth patterns and survival strategies of bacterial phylogenetic clades.

Salcher MM, Hofer J, Hornák K, Jezbera J, Sonntag B, Vrba J, Simek K, Posch T.

FEMS Microbiol Ecol. 2007 Apr;60(1):40-50. Epub 2007 Jan 24.

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