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Items: 38

1.

Cell signaling stabilizes morphogenesis against noise.

Hagolani PF, Zimm R, Marin-Riera M, Salazar-Ciudad I.

Development. 2019 Oct 18;146(20). pii: dev179309. doi: 10.1242/dev.179309.

PMID:
31628213
2.

Adaptation and Conservation throughout the Drosophila melanogaster Life-Cycle.

Coronado-Zamora M, Salvador-Martínez I, Castellano D, Barbadilla A, Salazar-Ciudad I.

Genome Biol Evol. 2019 May 1;11(5):1463-1482. doi: 10.1093/gbe/evz086.

3.

Bracketing phenogenotypic limits of mammalian hybridization.

Savriama Y, Valtonen M, Kammonen JI, Rastas P, Smolander OP, Lyyski A, Häkkinen TJ, Corfe IJ, Gerber S, Salazar-Ciudad I, Paulin L, Holm L, Löytynoja A, Auvinen P, Jernvall J.

R Soc Open Sci. 2018 Nov 28;5(11):180903. doi: 10.1098/rsos.180903. eCollection 2018 Nov.

4.

Quantitative Morphological Variation in the Developing Drosophila Wing.

Matamoro-Vidal A, Huang Y, Salazar-Ciudad I, Shimmi O, Houle D.

G3 (Bethesda). 2018 Jul 2;8(7):2399-2409. doi: 10.1534/g3.118.200372.

5.

Differential tissue growth and cell adhesion alone drive early tooth morphogenesis: An ex vivo and in silico study.

Marin-Riera M, Moustakas-Verho J, Savriama Y, Jernvall J, Salazar-Ciudad I.

PLoS Comput Biol. 2018 Feb 26;14(2):e1005981. doi: 10.1371/journal.pcbi.1005981. eCollection 2018 Feb.

6.

Mapping Selection within Drosophila melanogaster Embryo's Anatomy.

Salvador-Martínez I, Coronado-Zamora M, Castellano D, Barbadilla A, Salazar-Ciudad I.

Mol Biol Evol. 2018 Jan 1;35(1):66-79. doi: 10.1093/molbev/msx266.

PMID:
29040697
7.

Mechanical constraint from growing jaw facilitates mammalian dental diversity.

Renvoisé E, Kavanagh KD, Lazzari V, Häkkinen TJ, Rice R, Pantalacci S, Salazar-Ciudad I, Jernvall J.

Proc Natl Acad Sci U S A. 2017 Aug 29;114(35):9403-9408. doi: 10.1073/pnas.1707410114. Epub 2017 Aug 14.

8.

How complexity increases in development: An analysis of the spatial-temporal dynamics of Gene expression in Ciona intestinalis.

Salvador-Martínez I, Salazar-Ciudad I.

Mech Dev. 2017 Apr;144(Pt B):113-124. doi: 10.1016/j.mod.2017.02.001. Epub 2017 Feb 9.

9.

A set of simple cell processes is sufficient to model spiral cleavage.

Brun-Usan M, Marín-Riera M, Grande C, Truchado-Garcia M, Salazar-Ciudad I.

Development. 2017 Jan 1;144(1):54-62. doi: 10.1242/dev.140285. Epub 2016 Nov 25.

10.

Computational modeling of development by epithelia, mesenchyme and their interactions: a unified model.

Marin-Riera M, Brun-Usan M, Zimm R, Välikangas T, Salazar-Ciudad I.

Bioinformatics. 2016 Jan 15;32(2):219-25. doi: 10.1093/bioinformatics/btv527. Epub 2015 Sep 5.

PMID:
26342230
11.

Patterned Anchorage to the Apical Extracellular Matrix Defines Tissue Shape in the Developing Appendages of Drosophila.

Ray RP, Matamoro-Vidal A, Ribeiro PS, Tapon N, Houle D, Salazar-Ciudad I, Thompson BJ.

Dev Cell. 2015 Aug 10;34(3):310-22. doi: 10.1016/j.devcel.2015.06.019. Epub 2015 Jul 16.

12.

How complexity increases in development: An analysis of the spatial-temporal dynamics of 1218 genes in Drosophila melanogaster.

Salvador-Martínez I, Salazar-Ciudad I.

Dev Biol. 2015 Sep 15;405(2):328-39. doi: 10.1016/j.ydbio.2015.07.003. Epub 2015 Jul 14.

13.

Making quantitative morphological variation from basic developmental processes: Where are we? The case of the Drosophila wing.

Matamoro-Vidal A, Salazar-Ciudad I, Houle D.

Dev Dyn. 2015 Sep;244(9):1058-1073. doi: 10.1002/dvdy.24255. Epub 2015 Mar 31. Review.

14.

On the effect of phenotypic dimensionality on adaptation and optimality.

Brun-Usan M, Marin-Riera M, Salazar-Ciudad I.

J Evol Biol. 2014 Dec;27(12):2614-28. doi: 10.1111/jeb.12516. Epub 2014 Oct 9.

15.

Replaying evolutionary transitions from the dental fossil record.

Harjunmaa E, Seidel K, Häkkinen T, Renvoisé E, Corfe IJ, Kallonen A, Zhang ZQ, Evans AR, Mikkola ML, Salazar-Ciudad I, Klein OD, Jernvall J.

Nature. 2014 Aug 7;512(7512):44-8. doi: 10.1038/nature13613. Epub 2014 Jul 30.

16.

The origin and loss of periodic patterning in the turtle shell.

Moustakas-Verho JE, Zimm R, Cebra-Thomas J, Lempiäinen NK, Kallonen A, Mitchell KL, Hämäläinen K, Salazar-Ciudad I, Jernvall J, Gilbert SF.

Development. 2014 Aug;141(15):3033-9. doi: 10.1242/dev.109041.

17.

Adaptive dynamics under development-based genotype-phenotype maps.

Salazar-Ciudad I, Marín-Riera M.

Nature. 2013 May 16;497(7449):361-4. doi: 10.1038/nature12142. Epub 2013 May 1.

PMID:
23636325
18.

Tooth patterning and evolution.

Salazar-Ciudad I.

Curr Opin Genet Dev. 2012 Dec;22(6):585-92. doi: 10.1016/j.gde.2012.10.006. Epub 2012 Dec 19. Review.

PMID:
23266218
19.

A two level mutation-selection model of cultural evolution and diversity.

Salazar-Ciudad I.

J Theor Biol. 2010 Nov 21;267(2):171-85. doi: 10.1016/j.jtbi.2010.08.021. Epub 2010 Aug 26.

PMID:
20800601
20.

A computational model of teeth and the developmental origins of morphological variation.

Salazar-Ciudad I, Jernvall J.

Nature. 2010 Mar 25;464(7288):583-6. doi: 10.1038/nature08838. Epub 2010 Mar 10.

PMID:
20220757
21.

Morphological evolution and embryonic developmental diversity in metazoa.

Salazar-Ciudad I.

Development. 2010 Feb;137(4):531-9. doi: 10.1242/dev.045229. Review.

22.
23.

Evolution in biological and nonbiological systems under different mechanisms of generation and inheritance.

Salazar-Ciudad I.

Theory Biosci. 2008 Nov;127(4):343-58. doi: 10.1007/s12064-008-0052-x. Epub 2008 Oct 23.

PMID:
18946696
24.

Tooth morphogenesis in vivo, in vitro, and in silico.

Salazar-Ciudad I.

Curr Top Dev Biol. 2008;81:341-71. Review.

PMID:
18023734
25.

On the origins of morphological variation, canalization, robustness, and evolvability.

Salazar-Ciudad I.

Integr Comp Biol. 2007 Sep;47(3):390-400. doi: 10.1093/icb/icm075. Epub 2007 Jul 26.

PMID:
21672847
26.

The economy of tinkering mammalian teeth.

Jernvall J, Salazar-Ciudad I.

Novartis Found Symp. 2007;284:207-16; discussion 216-24. Review.

PMID:
17710855
27.

Commonalities in fly embryogenesis and mammalian pituitary patterning.

Veitia RA, Salazar-Ciudad I.

Trends Endocrinol Metab. 2007 Sep;18(7):261-5. Epub 2007 Aug 10. Review.

PMID:
17693094
28.

Continuous tooth generation in mouse is induced by activated epithelial Wnt/beta-catenin signaling.

Järvinen E, Salazar-Ciudad I, Birchmeier W, Taketo MM, Jernvall J, Thesleff I.

Proc Natl Acad Sci U S A. 2006 Dec 5;103(49):18627-32. Epub 2006 Nov 22.

29.

On the origins of morphological disparity and its diverse developmental bases.

Salazar-Ciudad I.

Bioessays. 2006 Nov;28(11):1112-22.

PMID:
17041901
30.

Developmental constraints vs. variational properties: How pattern formation can help to understand evolution and development.

Salazar-Ciudad I.

J Exp Zool B Mol Dev Evol. 2006 Mar 15;306(2):107-25. Review.

PMID:
16254986
31.

Graduality and innovation in the evolution of complex phenotypes: insights from development.

Salazar-Ciudad I, Jernvall J.

J Exp Zool B Mol Dev Evol. 2005 Nov 15;304(6):619-31.

PMID:
16032700
32.

How different types of pattern formation mechanisms affect the evolution of form and development.

Salazar-Ciudad I, Jernvall J.

Evol Dev. 2004 Jan-Feb;6(1):6-16.

PMID:
15108813
33.

Mechanisms of pattern formation in development and evolution.

Salazar-Ciudad I, Jernvall J, Newman SA.

Development. 2003 May;130(10):2027-37. Review.

34.

A gene network model accounting for development and evolution of mammalian teeth.

Salazar-Ciudad I, Jernvall J.

Proc Natl Acad Sci U S A. 2002 Jun 11;99(12):8116-20. Epub 2002 Jun 4.

35.

Phenotypic and dynamical transitions in model genetic networks. II. Application to the evolution of segmentation mechanisms.

Salazar-Ciudad I, Solé RV, Newman SA.

Evol Dev. 2001 Mar-Apr;3(2):95-103. Erratum in: Evol Dev 2001 Sep-Oct;3(5):371.

PMID:
11341678
36.
37.

Gene network dynamics and the evolution of development.

Solé RV, Salazar-Ciudad I I, Newman SA.

Trends Ecol Evol. 2000 Dec 1;15(12):479-480. No abstract available.

PMID:
11114427
38.

Gene networks capable of pattern formation: from induction to reaction-diffusion.

Salazar-Ciudad I, Garcia-Fernández J, Solé RV.

J Theor Biol. 2000 Aug 21;205(4):587-603.

PMID:
10931754

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