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Items: 46

1.

Mucosal Exposure to Cigarette Components Induces Intestinal Inflammation and Alters Antimicrobial Response in Mice.

Berkowitz L, Pardo-Roa C, Salazar GA, Salazar-Echegarai F, Miranda JP, Ramírez G, Chávez JL, Kalergis AM, Bueno SM, Álvarez-Lobos M.

Front Immunol. 2019 Sep 25;10:2289. doi: 10.3389/fimmu.2019.02289. eCollection 2019.

2.

Presence and diversity of Salmonella isolated from layer farms in central Ecuador.

Salazar GA, Guerrero-López R, Lalaleo L, Avilés-Esquivel D, Vinueza-Burgos C, Calero-Cáceres W.

Version 2. F1000Res. 2019 Feb 28 [revised 2019 Jan 1];8:235. doi: 10.12688/f1000research.18233.2. eCollection 2019.

3.

Interleukin-10 Produced by Myeloid-Derived Suppressor Cells Provides Protection to Carbapenem-Resistant Klebsiella pneumoniae Sequence Type 258 by Enhancing Its Clearance in the Airways.

Peñaloza HF, Noguera LP, Ahn D, Vallejos OP, Castellanos RM, Vazquez Y, Salazar-Echegarai FJ, González L, Suazo I, Pardo-Roa C, Salazar GA, Prince A, Bueno SM.

Infect Immun. 2019 Apr 23;87(5). pii: e00665-18. doi: 10.1128/IAI.00665-18. Print 2019 Mar.

4.

InterPro in 2019: improving coverage, classification and access to protein sequence annotations.

Mitchell AL, Attwood TK, Babbitt PC, Blum M, Bork P, Bridge A, Brown SD, Chang HY, El-Gebali S, Fraser MI, Gough J, Haft DR, Huang H, Letunic I, Lopez R, Luciani A, Madeira F, Marchler-Bauer A, Mi H, Natale DA, Necci M, Nuka G, Orengo C, Pandurangan AP, Paysan-Lafosse T, Pesseat S, Potter SC, Qureshi MA, Rawlings ND, Redaschi N, Richardson LJ, Rivoire C, Salazar GA, Sangrador-Vegas A, Sigrist CJA, Sillitoe I, Sutton GG, Thanki N, Thomas PD, Tosatto SCE, Yong SY, Finn RD.

Nucleic Acids Res. 2019 Jan 8;47(D1):D351-D360. doi: 10.1093/nar/gky1100.

5.

Genome properties in 2019: a new companion database to InterPro for the inference of complete functional attributes.

Richardson LJ, Rawlings ND, Salazar GA, Almeida A, Haft DR, Ducq G, Sutton GG, Finn RD.

Nucleic Acids Res. 2019 Jan 8;47(D1):D564-D572. doi: 10.1093/nar/gky1013.

6.

The Pfam protein families database in 2019.

El-Gebali S, Mistry J, Bateman A, Eddy SR, Luciani A, Potter SC, Qureshi M, Richardson LJ, Salazar GA, Smart A, Sonnhammer ELL, Hirsh L, Paladin L, Piovesan D, Tosatto SCE, Finn RD.

Nucleic Acids Res. 2019 Jan 8;47(D1):D427-D432. doi: 10.1093/nar/gky995.

7.

Heme Oxygenase-1 as a Modulator of Intestinal Inflammation Development and Progression.

Sebastián VP, Salazar GA, Coronado-Arrázola I, Schultz BM, Vallejos OP, Berkowitz L, Álvarez-Lobos MM, Riedel CA, Kalergis AM, Bueno SM.

Front Immunol. 2018 Sep 12;9:1956. doi: 10.3389/fimmu.2018.01956. eCollection 2018. Review.

8.

KL-6 But Not CCL-18 Is a Predictor of Early Progression in Systemic Sclerosis-related Interstitial Lung Disease.

Salazar GA, Kuwana M, Wu M, Estrada-Y-Martin RM, Ying J, Charles J, Mayes MD, Assassi S.

J Rheumatol. 2018 Aug;45(8):1153-1158. doi: 10.3899/jrheum.170518. Epub 2018 Jul 1.

PMID:
29961690
9.

Persistent Salmonella enterica serovar Typhimurium Infection Increases the Susceptibility of Mice to Develop Intestinal Inflammation.

Schultz BM, Salazar GA, Paduro CA, Pardo-Roa C, Pizarro DP, Salazar-Echegarai FJ, Torres J, Riedel CA, Kalergis AM, Álvarez-Lobos MM, Bueno SM.

Front Immunol. 2018 May 29;9:1166. doi: 10.3389/fimmu.2018.01166. eCollection 2018.

10.

Impact of Cigarette Smoking on the Gastrointestinal Tract Inflammation: Opposing Effects in Crohn's Disease and Ulcerative Colitis.

Berkowitz L, Schultz BM, Salazar GA, Pardo-Roa C, Sebastián VP, Álvarez-Lobos MM, Bueno SM.

Front Immunol. 2018 Jan 30;9:74. doi: 10.3389/fimmu.2018.00074. eCollection 2018. Review.

11.

EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.

Mitchell AL, Scheremetjew M, Denise H, Potter S, Tarkowska A, Qureshi M, Salazar GA, Pesseat S, Boland MA, Hunter FMI, Ten Hoopen P, Alako B, Amid C, Wilkinson DJ, Curtis TP, Cochrane G, Finn RD.

Nucleic Acids Res. 2018 Jan 4;46(D1):D726-D735. doi: 10.1093/nar/gkx967.

12.

Interleukin-10 Production by T and B Cells Is a Key Factor to Promote Systemic Salmonella enterica Serovar Typhimurium Infection in Mice.

Salazar GA, Peñaloza HF, Pardo-Roa C, Schultz BM, Muñoz-Durango N, Gómez RS, Salazar FJ, Pizarro DP, Riedel CA, González PA, Alvarez-Lobos M, Kalergis AM, Bueno SM.

Front Immunol. 2017 Aug 2;8:889. doi: 10.3389/fimmu.2017.00889. eCollection 2017.

13.

CCL2 in the Circulation Predicts Long-Term Progression of Interstitial Lung Disease in Patients With Early Systemic Sclerosis: Data From Two Independent Cohorts.

Wu M, Baron M, Pedroza C, Salazar GA, Ying J, Charles J, Agarwal SK, Hudson M, Pope J, Zhou X, Reveille JD, Fritzler MJ, Mayes MD, Assassi S.

Arthritis Rheumatol. 2017 Sep;69(9):1871-1878. doi: 10.1002/art.40171. Epub 2017 Aug 8.

14.

Platelet proteome reveals novel pathways of platelet activation and platelet-mediated immunoregulation in dengue.

Trugilho MRO, Hottz ED, Brunoro GVF, Teixeira-Ferreira A, Carvalho PC, Salazar GA, Zimmerman GA, Bozza FA, Bozza PT, Perales J.

PLoS Pathog. 2017 May 19;13(5):e1006385. doi: 10.1371/journal.ppat.1006385. eCollection 2017 May.

15.

A Potential Role of Salmonella Infection in the Onset of Inflammatory Bowel Diseases.

Schultz BM, Paduro CA, Salazar GA, Salazar-Echegarai FJ, Sebastián VP, Riedel CA, Kalergis AM, Alvarez-Lobos M, Bueno SM.

Front Immunol. 2017 Feb 28;8:191. doi: 10.3389/fimmu.2017.00191. eCollection 2017. Review.

16.

A pilot study applying the plant Anchored Hybrid Enrichment method to New World sages (Salvia subgenus Calosphace; Lamiaceae).

Fragoso-Martínez I, Salazar GA, Martínez-Gordillo M, Magallón S, Sánchez-Reyes L, Moriarty Lemmon E, Lemmon AR, Sazatornil F, Granados Mendoza C.

Mol Phylogenet Evol. 2017 Dec;117:124-134. doi: 10.1016/j.ympev.2017.02.006. Epub 2017 Feb 9.

PMID:
28189618
17.

Opposing roles of IL-10 in acute bacterial infection.

Peñaloza HF, Schultz BM, Nieto PA, Salazar GA, Suazo I, Gonzalez PA, Riedel CA, Alvarez-Lobos MM, Kalergis AM, Bueno SM.

Cytokine Growth Factor Rev. 2016 Dec;32:17-30. doi: 10.1016/j.cytogfr.2016.07.003. Epub 2016 Jul 25. Review.

PMID:
27522641
18.

Genetic susceptibility loci of idiopathic interstitial pneumonia do not represent risk for systemic sclerosis: a case control study in Caucasian patients.

Wu M, Assassi S, Salazar GA, Pedroza C, Gorlova OY, Chen WV, Charles J, Taing ML, Liao K, Wigley FM, Hummers LK, Shah AA, Hinchcliff M, Khanna D, Schiopu E, Phillips K, Furst DE, Steen V, Baron M, Hudson M, Zhou X, Pope J, Jones N, Docherty P, Khalidi NA, Robinson D, Simms RW, Silver RM, Frech TM, Fessler BJ, Fritzler MJ, Molitor JA, Segal BM, Movahedian M, Martín J, Varga J, Mayes MD.

Arthritis Res Ther. 2016 Jan 20;18:20. doi: 10.1186/s13075-016-0923-3.

19.

The Pfam protein families database: towards a more sustainable future.

Finn RD, Coggill P, Eberhardt RY, Eddy SR, Mistry J, Mitchell AL, Potter SC, Punta M, Qureshi M, Sangrador-Vegas A, Salazar GA, Tate J, Bateman A.

Nucleic Acids Res. 2016 Jan 4;44(D1):D279-85. doi: 10.1093/nar/gkv1344. Epub 2015 Dec 15.

20.

Formation of a fluorous/organic biphasic supramolecular octopus assembly for enhanced porphyrin phosphorescence in air.

Yang C, Arvapally RK, Tekarli SM, Salazar GA, Elbjeirami O, Wang X, Omary MA.

Angew Chem Int Ed Engl. 2015 Apr 13;54(16):4842-6. doi: 10.1002/anie.201411462. Epub 2015 Mar 3.

PMID:
25735258
21.

Antinuclear antibody-negative systemic sclerosis.

Salazar GA, Assassi S, Wigley F, Hummers L, Varga J, Hinchcliff M, Khanna D, Schiopu E, Phillips K, Furst DE, Steen V, Baron M, Hudson M, Taillefer SS, Pope J, Jones N, Docherty P, Khalidi NA, Robinson D, Simms RW, Silver RM, Frech TM, Fessler BJ, Molitor JA, Fritzler MJ, Segal BM, Al-Kassab F, Perry M, Yang J, Zamanian S, Reveille JD, Arnett FC, Pedroza C, Mayes MD.

Semin Arthritis Rheum. 2015 Jun;44(6):680-6. doi: 10.1016/j.semarthrit.2014.11.006. Epub 2014 Nov 28.

22.

PPI layouts: BioJS components for the display of Protein-Protein Interactions.

Salazar GA, Meintjes A, Mulder N.

F1000Res. 2014 Feb 13;3:50. doi: 10.12688/f1000research.3-50.v1. eCollection 2014.

23.

A web-based protein interaction network visualizer.

Salazar GA, Meintjes A, Mazandu GK, Rapanoël HA, Akinola RO, Mulder NJ.

BMC Bioinformatics. 2014 May 6;15:129. doi: 10.1186/1471-2105-15-129.

24.

iAnn: an event sharing platform for the life sciences.

Jimenez RC, Albar JP, Bhak J, Blatter MC, Blicher T, Brazas MD, Brooksbank C, Budd A, De Las Rivas J, Dreyer J, van Driel MA, Dunn MJ, Fernandes PL, van Gelder CW, Hermjakob H, Ioannidis V, Judge DP, Kahlem P, Korpelainen E, Kraus HJ, Loveland J, Mayer C, McDowall J, Moran F, Mulder N, Nyronen T, Rother K, Salazar GA, Schneider R, Via A, Villaveces JM, Yu P, Schneider MV, Attwood TK, Corpas M.

Bioinformatics. 2013 Aug 1;29(15):1919-21. doi: 10.1093/bioinformatics/btt306. Epub 2013 Jun 5.

25.

Installation of hybrid ion source on the 1-MV LLNL BioAMS spectrometer.

Ognibene TJ, Salazar GA.

Nucl Instrum Methods Phys Res B. 2013 Jan 1;294:311-314. Epub 2011 Nov 28.

26.

BioJS: an open source JavaScript framework for biological data visualization.

Gómez J, García LJ, Salazar GA, Villaveces J, Gore S, García A, Martín MJ, Launay G, Alcántara R, Del-Toro N, Dumousseau M, Orchard S, Velankar S, Hermjakob H, Zong C, Ping P, Corpas M, Jiménez RC.

Bioinformatics. 2013 Apr 15;29(8):1103-4. doi: 10.1093/bioinformatics/btt100. Epub 2013 Feb 23.

27.

Molecular phylogenetics of the species-rich genus Habenaria (Orchidaceae) in the New World based on nuclear and plastid DNA sequences.

Batista JA, Borges KS, de Faria MW, Proite K, Ramalho AJ, Salazar GA, van den Berg C.

Mol Phylogenet Evol. 2013 Apr;67(1):95-109. doi: 10.1016/j.ympev.2013.01.008. Epub 2013 Jan 19.

28.

Stelis zootrophionoides (Orchidaceae: Pleurothallidinae), a new species from Mexico.

Ramos-Castro SE, Castañeda-Zárate M, Solano-Gómez R, Salazar GA.

PLoS One. 2012;7(11):e48822. doi: 10.1371/journal.pone.0048822. Epub 2012 Nov 7.

29.

MyDas, an extensible Java DAS server.

Salazar GA, García LJ, Jones P, Jimenez RC, Quinn AF, Jenkinson AM, Mulder N, Martin M, Hunter S, Hermjakob H.

PLoS One. 2012;7(9):e44180. doi: 10.1371/journal.pone.0044180. Epub 2012 Sep 13.

30.

myKaryoView: a light-weight client for visualization of genomic data.

Jimenez RC, Salazar GA, Gel B, Dopazo J, Mulder N, Corpas M.

PLoS One. 2011;6(10):e26345. doi: 10.1371/journal.pone.0026345. Epub 2011 Oct 26.

31.

Dasty3, a WEB framework for DAS.

Villaveces JM, Jimenez RC, Garcia LJ, Salazar GA, Gel B, Mulder N, Martin M, Garcia A, Hermjakob H.

Bioinformatics. 2011 Sep 15;27(18):2616-7. doi: 10.1093/bioinformatics/btr433. Epub 2011 Jul 28.

32.

Molecular phylogeny of Cypripedium (Orchidaceae: Cypripedioideae) inferred from multiple nuclear and chloroplast regions.

Li JH, Liu ZJ, Salazar GA, Bernhardt P, Perner H, Tomohisa Y, Jin XH, Chung SW, Luo YB.

Mol Phylogenet Evol. 2011 Nov;61(2):308-20. doi: 10.1016/j.ympev.2011.06.006. Epub 2011 Jun 22.

PMID:
21718793
33.

DAS writeback: a collaborative annotation system.

Salazar GA, Jimenez RC, Garcia A, Hermjakob H, Mulder N, Blake E.

BMC Bioinformatics. 2011 May 10;12:143. doi: 10.1186/1471-2105-12-143.

34.

Detection of explosives and related compounds by low-temperature plasma ambient ionization mass spectrometry.

Garcia-Reyes JF, Harper JD, Salazar GA, Charipar NA, Ouyang Z, Cooks RG.

Anal Chem. 2011 Feb 1;83(3):1084-92. doi: 10.1021/ac1029117. Epub 2010 Dec 21.

PMID:
21174437
35.

Trace detection of non-uniformly distributed analytes on surfaces using mass transfer and large-area desorption electrospray ionization (DESI) mass spectrometry.

Soparawalla S, Salazar GA, Sokol E, Perry RH, Cooks RG.

Analyst. 2010 Aug;135(8):1953-60. doi: 10.1039/c0an00189a. Epub 2010 Jun 10.

PMID:
20539884
36.

Rephasing ion packets in the Orbitrap mass analyzer to improve resolution and peak shape.

Perry RH, Hu Q, Salazar GA, Cooks RG, Noll RJ.

J Am Soc Mass Spectrom. 2009 Aug;20(8):1397-404. doi: 10.1016/j.jasms.2009.02.011. Epub 2009 Feb 12.

37.

Phylogenetic relationships of Cranichidinae and Prescottiinae (Orchidaceae, Cranichideae) inferred from plastid and nuclear DNA sequences.

Salazar GA, Cabrera LI, Madriñán S, Chase MW.

Ann Bot. 2009 Aug;104(3):403-16. doi: 10.1093/aob/mcn257. Epub 2009 Jan 9.

38.

Pharmaceutical cleaning validation using non-proximate large-area desorption electrospray ionization mass spectrometry.

Soparawalla S, Salazar GA, Perry RH, Nicholas M, Cooks RG.

Rapid Commun Mass Spectrom. 2009 Jan;23(1):131-7. doi: 10.1002/rcm.3853.

PMID:
19086007
39.

Phylogenetic relationships of aroids and duckweeds (Araceae) inferred from coding and noncoding plastid DNA.

Cabrera LI, Salazar GA, Chase MW, Mayo SJ, Bogner J, Dávila P.

Am J Bot. 2008 Sep;95(9):1153-65. doi: 10.3732/ajb.0800073.

40.

Dasty2, an Ajax protein DAS client.

Jimenez RC, Quinn AF, Garcia A, Labarga A, O'Neill K, Martinez F, Salazar GA, Hermjakob H.

Bioinformatics. 2008 Sep 15;24(18):2119-21. doi: 10.1093/bioinformatics/btn387. Epub 2008 Aug 11.

PMID:
18694895
41.

Computer simulation of the gap-tripole ion trap with linear injection, 3D ion accumulation, and versatile packet ejection.

Salazar GA, Masujima T.

J Am Soc Mass Spectrom. 2008 Sep;19(9):1367-74. doi: 10.1016/j.jasms.2008.05.022. Epub 2008 Jun 11.

42.

The tripole linear ion trap with highly efficient orthogonal ion ejection designed by computer simulations.

Salazar GA, Masujima T.

Rapid Commun Mass Spectrom. 2008 May;22(9):1351-8. doi: 10.1002/rcm.3510.

PMID:
18384193
43.

Root character evolution and systematics in Cranichidinae, Prescottiinae and Spiranthinae (Orchidaceae, Cranichideae).

Figueroa C, Salazar GA, Zavaleta HA, Engleman EM.

Ann Bot. 2008 Mar;101(4):509-20. doi: 10.1093/aob/mcm328. Epub 2008 Feb 7.

44.

Computer simulations of a new three rods ion optic (TRIPOLE) with high focusing and mass filtering capabilities.

Salazar GA, Masujima T.

J Am Soc Mass Spectrom. 2007 Mar;18(3):413-21. Epub 2006 Dec 4.

45.

Resuscitation great. Breaking the thermal barrier: Dr. Temple Fay.

Alzaga AG, Salazar GA, Varon J.

Resuscitation. 2006 Jun;69(3):359-64. No abstract available.

PMID:
16750475
46.

Phylogenetics of Cranichideae with emphasis on Spiranthinae (Orchidaceae, Orchidoideae): evidence from plastid and nuclear DNA sequences.

Salazar GA, Chase MW, Soto Arenas MA, Ingrouille M.

Am J Bot. 2003 May;90(5):777-95. doi: 10.3732/ajb.90.5.777.

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