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Items: 10

1.

Current State of and Future Opportunities for Prediction in Microbiome Research: Report from the Mid-Atlantic Microbiome Meet-up in Baltimore on 9 January 2019.

Sakowski E, Uritskiy G, Cooper R, Gomes M, McLaren MR, Meisel JS, Mickol RL, Mintz CD, Mongodin EF, Pop M, Rahman MA, Sanchez A, Timp W, Vela JD, Wolz CM, Zackular JP, Chopyk J, Commichaux S, Davis M, Dluzen D, Ganesan SM, Haruna M, Nasko D, Regan MJ, Sarria S, Shah N, Stacy B, Taylor D, DiRuggiero J, Preheim SP.

mSystems. 2019 Oct 8;4(5). pii: e00392-19. doi: 10.1128/mSystems.00392-19.

2.

Ultrasensitive Detection of Hepatotoxic Microcystin Production from Cyanobacteria Using Surface-Enhanced Raman Scattering Immunosensor.

Li M, Paidi SK, Sakowski E, Preheim S, Barman I.

ACS Sens. 2019 May 24;4(5):1203-1210. doi: 10.1021/acssensors.8b01453. Epub 2019 Apr 23.

PMID:
30990314
3.

Family A DNA Polymerase Phylogeny Uncovers Diversity and Replication Gene Organization in the Virioplankton.

Nasko DJ, Chopyk J, Sakowski EG, Ferrell BD, Polson SW, Wommack KE.

Front Microbiol. 2018 Dec 14;9:3053. doi: 10.3389/fmicb.2018.03053. eCollection 2018.

4.

Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018.

Meisel JS, Nasko DJ, Brubach B, Cepeda-Espinoza V, Chopyk J, Corrada-Bravo H, Fedarko M, Ghurye J, Javkar K, Olson ND, Shah N, Allard SM, Bazinet AL, Bergman NH, Brown A, Caporaso JG, Conlan S, DiRuggiero J, Forry SP, Hasan NA, Kralj J, Luethy PM, Milton DK, Ondov BD, Preheim S, Ratnayake S, Rogers SM, Rosovitz MJ, Sakowski EG, Schliebs NO, Sommer DD, Ternus KL, Uritskiy G, Zhang SX, Pop M, Treangen TJ.

Microbiome. 2018 Nov 5;6(1):197. doi: 10.1186/s40168-018-0582-5.

5.

Mycobacterium tuberculosis induces the miR-33 locus to reprogram autophagy and host lipid metabolism.

Ouimet M, Koster S, Sakowski E, Ramkhelawon B, van Solingen C, Oldebeken S, Karunakaran D, Portal-Celhay C, Sheedy FJ, Ray TD, Cecchini K, Zamore PD, Rayner KJ, Marcel YL, Philips JA, Moore KJ.

Nat Immunol. 2016 Jun;17(6):677-86. doi: 10.1038/ni.3434. Epub 2016 Apr 18.

6.

Ubiquilin 1 Promotes IFN-γ-Induced Xenophagy of Mycobacterium tuberculosis.

Sakowski ET, Koster S, Portal Celhay C, Park HS, Shrestha E, Hetzenecker SE, Maurer K, Cadwell K, Philips JA.

PLoS Pathog. 2015 Jul 30;11(7):e1005076. doi: 10.1371/journal.ppat.1005076. eCollection 2015 Jul.

7.

Counts and sequences, observations that continue to change our understanding of viruses in nature.

Wommack KE, Nasko DJ, Chopyk J, Sakowski EG.

J Microbiol. 2015 Mar;53(3):181-92. doi: 10.1007/s12275-015-5068-6. Epub 2015 Mar 3. Review.

PMID:
25732739
8.

Ribonucleotide reductases reveal novel viral diversity and predict biological and ecological features of unknown marine viruses.

Sakowski EG, Munsell EV, Hyatt M, Kress W, Williamson SJ, Nasko DJ, Polson SW, Wommack KE.

Proc Natl Acad Sci U S A. 2014 Nov 4;111(44):15786-91. doi: 10.1073/pnas.1401322111. Epub 2014 Oct 13.

9.

Shotgun metagenomics indicates novel family A DNA polymerases predominate within marine virioplankton.

Schmidt HF, Sakowski EG, Williamson SJ, Polson SW, Wommack KE.

ISME J. 2014 Jan;8(1):103-14. doi: 10.1038/ismej.2013.124. Epub 2013 Aug 29.

10.

A carbon free filter for collection of large volume samples of cellular biomass from oligotrophic waters.

Mailloux BJ, Dochenetz A, Bishop M, Dong H, Ziolkowski LA, Wommack KE, Sakowski EG, Onstott TC, Slater GF.

J Microbiol Methods. 2012 Sep;90(3):145-51. doi: 10.1016/j.mimet.2012.04.016. Epub 2012 May 3.

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