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Items: 1 to 50 of 177

1.

Chance, Finiteness, and History.

Saitou N.

Mol Biol Evol. 2018 Jun 1;35(6):1556-1557. doi: 10.1093/molbev/msy087.

PMID:
29697849
2.

Draft genome sequence of Japanese wood mouse, Apodemus speciosus.

Matsunami M, Endo D, Saitou N, Suzuki H, Onuma M.

Data Brief. 2017 Oct 31;16:43-46. doi: 10.1016/j.dib.2017.10.063. eCollection 2018 Feb.

3.

Discerning the Origins of the Negritos, First Sundaland People: Deep Divergence and Archaic Admixture.

Jinam TA, Phipps ME, Aghakhanian F, Majumder PP, Datar F, Stoneking M, Sawai H, Nishida N, Tokunaga K, Kawamura S, Omoto K, Saitou N.

Genome Biol Evol. 2017 Aug 1;9(8):2013-2022. doi: 10.1093/gbe/evx118.

4.

Silencing Effect of Hominoid Highly Conserved Noncoding Sequences on Embryonic Brain Development.

Mahmoudi Saber M, Saitou N.

Genome Biol Evol. 2017 Aug 1;9(8):2037-2048. doi: 10.1093/gbe/evx105.

5.

GC Content Heterogeneity Transition of Conserved Noncoding Sequences Occurred at the Emergence of Vertebrates.

Hettiarachchi N, Saitou N.

Genome Biol Evol. 2016 Dec 31;8(11):3377-3392. doi: 10.1093/gbe/evw231.

6.

A partial nuclear genome of the Jomons who lived 3000 years ago in Fukushima, Japan.

Kanzawa-Kiriyama H, Kryukov K, Jinam TA, Hosomichi K, Saso A, Suwa G, Ueda S, Yoneda M, Tajima A, Shinoda KI, Inoue I, Saitou N.

J Hum Genet. 2017 Feb;62(2):213-221. doi: 10.1038/jhg.2016.110. Epub 2016 Sep 1.

7.

Emergence and Evolution of Hominidae-Specific Coding and Noncoding Genomic Sequences.

Saber MM, Adeyemi Babarinde I, Hettiarachchi N, Saitou N.

Genome Biol Evol. 2016 Jul 12;8(7):2076-92. doi: 10.1093/gbe/evw132.

8.

Death Pronouncements: Recommendations Based on a Survey of Bereaved Family Members.

Kusakabe A, Naito AS, Hirano K, Ikenaga K, Saitou N, Mikan H, Okita M, Inamori M, Morita T.

J Palliat Med. 2016 Jun;19(6):646-51. doi: 10.1089/jpm.2015.0333. Epub 2016 May 16.

PMID:
27182823
9.

Genomic Locations of Conserved Noncoding Sequences and Their Proximal Protein-Coding Genes in Mammalian Expression Dynamics.

Babarinde IA, Saitou N.

Mol Biol Evol. 2016 Jul;33(7):1807-17. doi: 10.1093/molbev/msw058. Epub 2016 Mar 26.

PMID:
27017584
10.

No Distinction of Orthology/Paralogy between Human and Chimpanzee Rh Blood Group Genes.

Kitano T, Kim CG, Blancher A, Saitou N.

Genome Biol Evol. 2016 Feb 12;8(3):519-27. doi: 10.1093/gbe/evw022.

11.

Human genetic diversity in the Japanese Archipelago: dual structure and beyond.

Jinam TA, Kanzawa-Kiriyama H, Saitou N.

Genes Genet Syst. 2015;90(3):147-52. doi: 10.1266/ggs.90.147.

12.

Unique characteristics of the Ainu population in Northern Japan.

Jinam TA, Kanzawa-Kiriyama H, Inoue I, Tokunaga K, Omoto K, Saitou N.

J Hum Genet. 2015 Oct;60(10):565-71. doi: 10.1038/jhg.2015.79. Epub 2015 Jul 16.

PMID:
26178428
13.

Whole-genome sequencing of six Mauritian Cynomolgus macaques (Macaca fascicularis) reveals a genome-wide pattern of polymorphisms under extreme population bottleneck.

Osada N, Hettiarachchi N, Adeyemi Babarinde I, Saitou N, Blancher A.

Genome Biol Evol. 2015 Mar 23;7(3):821-30. doi: 10.1093/gbe/evv033.

14.

["Manual on physician behavior at the time of death certification" created through collaboration with different local healthcare workers].

Kusakabe A, Hirano K, Ikenaga K, Saitou N, Mikan F, Okita M, Inamori M, Shirado A, Morita T.

Gan To Kagaku Ryoho. 2014 Dec;41 Suppl 1:42-4. Japanese.

PMID:
25595079
15.

Difference in pulmonary permeability between indirect and direct acute respiratory distress syndrome assessed by the transpulmonary thermodilution technique: a prospective, observational, multi-institutional study.

Morisawa K, Fujitani S, Taira Y, Kushimoto S, Kitazawa Y, Okuchi K, Ishikura H, Sakamoto T, Tagami T, Yamaguchi J, Sugita M, Kase Y, Kanemura T, Takahashi H, Kuroki Y, Izumino H, Rinka H, Seo R, Takatori M, Kaneko T, Nakamura T, Irahara T, Saitou N, Watanabe A; PiCCO Pulmonary Edema Study Group.

J Intensive Care. 2014 Mar 25;2(1):24. doi: 10.1186/2052-0492-2-24. eCollection 2014.

16.

Lineage-specific conserved noncoding sequences of plant genomes: their possible role in nucleosome positioning.

Hettiarachchi N, Kryukov K, Sumiyama K, Saitou N.

Genome Biol Evol. 2014 Sep;6(9):2527-42.

17.

An integrative evolution theory of histo-blood group ABO and related genes.

Yamamoto F, Cid E, Yamamoto M, Saitou N, Bertranpetit J, Blancher A.

Sci Rep. 2014 Oct 13;4:6601. doi: 10.1038/srep06601.

18.

Admixture patterns and genetic differentiation in negrito groups from West Malaysia estimated from genome-wide SNP data.

Jinam TA, Phipps ME, Saitou N; Hugo Pan-Asian SNP Consortium.

Hum Biol. 2013 Feb-Jun;85(1-3):173-88.

PMID:
24297225
19.

Heterogeneous tempo and mode of conserved noncoding sequence evolution among four mammalian orders.

Babarinde IA, Saitou N.

Genome Biol Evol. 2013;5(12):2330-43. doi: 10.1093/gbe/evt177.

20.

Regional DNA methylation differences between humans and chimpanzees are associated with genetic changes, transcriptional divergence and disease genes.

Fukuda K, Ichiyanagi K, Yamada Y, Go Y, Udono T, Wada S, Maeda T, Soejima H, Saitou N, Ito T, Sasaki H.

J Hum Genet. 2013 Jul;58(7):446-54. doi: 10.1038/jhg.2013.55. Epub 2013 Jun 6.

PMID:
23739127
21.

A hypervariable STR polymorphism in the CFI gene: southern origin of East Asian-specific group H alleles.

Yuasa I, Jin F, Harihara S, Matsusue A, Fujihara J, Takeshita H, Akane A, Umetsu K, Saitou N, Chattopadhyay PK.

Leg Med (Tokyo). 2013 Sep;15(5):239-43. doi: 10.1016/j.legalmed.2013.04.001. Epub 2013 May 17.

PMID:
23688582
22.

Observation of vocal fold and pharyngeal paralysis after carotid endarterectomy using a magnifying laryngoscope.

Tamaki T, Node Y, Saitou N, Saigusa H.

World J Surg. 2013 Apr;37(4):911-4. doi: 10.1007/s00268-013-1920-1.

PMID:
23358594
23.

Vertebrate paralogous conserved noncoding sequences may be related to gene expressions in brain.

Matsunami M, Saitou N.

Genome Biol Evol. 2013;5(1):140-50. doi: 10.1093/gbe/evs128.

24.

The history of human populations in the Japanese Archipelago inferred from genome-wide SNP data with a special reference to the Ainu and the Ryukyuan populations.

Japanese Archipelago Human Population Genetics Consortium, Jinam T, Nishida N, Hirai M, Kawamura S, Oota H, Umetsu K, Kimura R, Ohashi J, Tajima A, Yamamoto T, Tanabe H, Mano S, Suto Y, Kaname T, Naritomi K, Yanagi K, Niikawa N, Omoto K, Tokunaga K, Saitou N.

J Hum Genet. 2012 Dec;57(12):787-95. doi: 10.1038/jhg.2012.114. Epub 2012 Nov 8.

PMID:
23135232
25.

The PNarec method for detection of ancient recombinations through phylogenetic network analysis.

Saitou N, Kitano T.

Mol Phylogenet Evol. 2013 Feb;66(2):507-14. doi: 10.1016/j.ympev.2012.09.015. Epub 2012 Sep 25.

PMID:
23022140
26.

Evolutionary history of continental southeast Asians: "early train" hypothesis based on genetic analysis of mitochondrial and autosomal DNA data.

Jinam TA, Hong LC, Phipps ME, Stoneking M, Ameen M, Edo J; HUGO Pan-Asian SNP Consortium, Saitou N.

Mol Biol Evol. 2012 Nov;29(11):3513-27. doi: 10.1093/molbev/mss169. Epub 2012 Jun 22.

PMID:
22729749
27.

Identification and characterization of lineage-specific highly conserved noncoding sequences in Mammalian genomes.

Takahashi M, Saitou N.

Genome Biol Evol. 2012;4(5):641-57. doi: 10.1093/gbe/evs035. Epub 2012 Apr 13.

28.

A new database (GCD) on genome composition for eukaryote and prokaryote genome sequences and their initial analyses.

Kryukov K, Sumiyama K, Ikeo K, Gojobori T, Saitou N.

Genome Biol Evol. 2012;4(4):501-12. doi: 10.1093/gbe/evs026. Epub 2012 Mar 14.

29.

The functional A allele was resurrected via recombination in the human ABO blood group gene.

Kitano T, Blancher A, Saitou N.

Mol Biol Evol. 2012 Jul;29(7):1791-6. doi: 10.1093/molbev/mss021. Epub 2012 Jan 27.

PMID:
22319172
30.

Denisova admixture and the first modern human dispersals into Southeast Asia and Oceania.

Reich D, Patterson N, Kircher M, Delfin F, Nandineni MR, Pugach I, Ko AM, Ko YC, Jinam TA, Phipps ME, Saitou N, Wollstein A, Kayser M, Pääbo S, Stoneking M.

Am J Hum Genet. 2011 Oct 7;89(4):516-28. doi: 10.1016/j.ajhg.2011.09.005. Epub 2011 Sep 22.

31.

Loss-of-function mutation in a repressor module of human-specifically activated enhancer HACNS1.

Sumiyama K, Saitou N.

Mol Biol Evol. 2011 Nov;28(11):3005-7. doi: 10.1093/molbev/msr231. Epub 2011 Sep 22.

PMID:
21940638
32.

Complete genome sequences of rat and mouse segmented filamentous bacteria, a potent inducer of th17 cell differentiation.

Prakash T, Oshima K, Morita H, Fukuda S, Imaoka A, Kumar N, Sharma VK, Kim SW, Takahashi M, Saitou N, Taylor TD, Ohno H, Umesaki Y, Hattori M.

Cell Host Microbe. 2011 Sep 15;10(3):273-84. doi: 10.1016/j.chom.2011.08.007.

33.

Evolutionary patterns of recently emerged animal duplogs.

Ezawa K, Ikeo K, Gojobori T, Saitou N.

Genome Biol Evol. 2011;3:1119-35. doi: 10.1093/gbe/evr074. Epub 2011 Aug 22.

34.

Exploration for functional nucleotide sequence candidates within coding regions of mammalian genes.

Suzuki R, Saitou N.

DNA Res. 2011 Jun;18(3):177-87. doi: 10.1093/dnares/dsr010. Epub 2011 May 17.

35.

Distribution of OCA2∗481Thr and OCA2∗615Arg, associated with hypopigmentation, in several additional populations.

Yuasa I, Harihara S, Jin F, Nishimukai H, Fujihara J, Fukumori Y, Takeshita H, Umetsu K, Saitou N.

Leg Med (Tokyo). 2011 Jul;13(4):215-7. doi: 10.1016/j.legalmed.2011.04.003. Epub 2011 May 11.

PMID:
21565543
36.

A commentary on the Soliga, an isolated tribe from Southern India: genetic diversity and phylogenetic affinities.

Saitou N.

J Hum Genet. 2011 Apr;56(4):257. doi: 10.1038/jhg.2011.8. Epub 2011 Feb 10. No abstract available.

PMID:
21307864
37.

Evolution of conserved non-coding sequences within the vertebrate Hox clusters through the two-round whole genome duplications revealed by phylogenetic footprinting analysis.

Matsunami M, Sumiyama K, Saitou N.

J Mol Evol. 2010 Dec;71(5-6):427-36. doi: 10.1007/s00239-010-9396-1. Epub 2010 Oct 28.

PMID:
20981416
38.

A new framework for studying the isochore evolution: estimation of the equilibrium GC content based on the temporal mutation rate model.

Oota S, Kawamura K, Kawai Y, Saitou N.

Genome Biol Evol. 2010;2:558-71. doi: 10.1093/gbe/evq041. Epub 2010 Jul 8.

39.

Evolution of two Rh blood group-related genes of the amphioxus species Branchiostoma floridae.

Kitano T, Satou M, Saitou N.

Genes Genet Syst. 2010 Apr;85(2):121-7.

40.

A Japanese-specific allele in the GALNT11 gene.

Yuasa I, Umetsu K, Matsusue A, Nishimukai H, Harihara S, Fukumori Y, Saitou N, Jin F, Chattopadhyay PK, Henke L, Henke J.

Leg Med (Tokyo). 2010 Jul;12(4):208-11. doi: 10.1016/j.legalmed.2010.04.001.

PMID:
20547088
41.

Evolutionary pattern of gene homogenization between primate-specific paralogs after human and macaque speciation using the 4-2-4 method.

Ezawa K, Ikeo K, Gojobori T, Saitou N.

Mol Biol Evol. 2010 Sep;27(9):2152-71. doi: 10.1093/molbev/msq109. Epub 2010 Apr 29.

PMID:
20430861
42.

MISHIMA--a new method for high speed multiple alignment of nucleotide sequences of bacterial genome scale data.

Kryukov K, Saitou N.

BMC Bioinformatics. 2010 Mar 18;11:142. doi: 10.1186/1471-2105-11-142.

43.

Study of cynomolgus monkey (Macaca fascicularis) DRA polymorphism in four populations.

Aarnink A, Estrade L, Apoil PA, Kita YF, Saitou N, Shiina T, Blancher A.

Immunogenetics. 2010 Mar;62(3):123-36. doi: 10.1007/s00251-009-0421-8. Epub 2010 Jan 22.

PMID:
20094710
44.

Molecular analysis of HLA Class I and Class II genes in four indigenous Malaysian populations.

Jinam TA, Saitou N, Edo J, Mahmood A, Phipps ME.

Tissue Antigens. 2010 Feb;75(2):151-8. doi: 10.1111/j.1399-0039.2009.01417.x. Epub 2009 Dec 14.

PMID:
20003135
45.

A hypervariable STR polymorphism in the complement factor I (CFI) gene: Asian-specific alleles.

Yuasa I, Irizawa Y, Nishimukai H, Fukumori Y, Umetsu K, Nakayashiki N, Saitou N, Henke L, Henke J.

Int J Legal Med. 2011 Jan;125(1):121-5. doi: 10.1007/s00414-009-0369-0. Epub 2009 Aug 20.

PMID:
19693526
46.

HERC1 polymorphisms: population-specific variations in haplotype composition.

Yuasa I, Umetsu K, Nishimukai H, Fukumori Y, Harihara S, Saitou N, Jin F, Chattopadhyay PK, Henke L, Henke J.

Cell Biochem Funct. 2009 Aug;27(6):402-5. doi: 10.1002/cbf.1582.

PMID:
19618402
47.

Estimation of bacterial species phylogeny through oligonucleotide frequency distances.

Takahashi M, Kryukov K, Saitou N.

Genomics. 2009 Jun;93(6):525-33. doi: 10.1016/j.ygeno.2009.01.009. Epub 2009 Feb 12.

48.

MHC class II DR classification based on antigen-binding groove natural selection.

Takeshima SN, Sarai A, Saitou N, Aida Y.

Biochem Biophys Res Commun. 2009 Jul 24;385(2):137-42. doi: 10.1016/j.bbrc.2009.04.142. Epub 2009 May 5. Erratum in: Biochem Biophys Res Commun. 2010 Mar 12;393(3):560. Sarai, Yoshinori [corrected to Sarai, Akinori].

PMID:
19422791
49.

Relic of ancient recombinations in gibbon ABO blood group genes deciphered through phylogenetic network analysis.

Kitano T, Noda R, Takenaka O, Saitou N.

Mol Phylogenet Evol. 2009 Jun;51(3):465-71. doi: 10.1016/j.ympev.2009.02.023. Epub 2009 Mar 17.

PMID:
19298858
50.

Variable number of tandem repeat polymorphisms of DRD4: re-evaluation of selection hypothesis and analysis of association with schizophrenia.

Hattori E, Nakajima M, Yamada K, Iwayama Y, Toyota T, Saitou N, Yoshikawa T.

Eur J Hum Genet. 2009 Jun;17(6):793-801. doi: 10.1038/ejhg.2008.247. Epub 2008 Dec 17.

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