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Items: 49

1.

Unique Patterns and Biogeochemical Relevance of Two-Component Sensing in Marine Bacteria.

Held NA, McIlvin MR, Moran DM, Laub MT, Saito MA.

mSystems. 2019 Feb 5;4(1). pii: e00317-18. doi: 10.1128/mSystems.00317-18. eCollection 2019 Jan-Feb.

2.

Marine Synechococcus isolates representing globally abundant genomic lineages demonstrate a unique evolutionary path of genome reduction without a decrease in GC content.

Lee MD, Ahlgren NA, Kling JD, Walworth NG, Rocap G, Saito MA, Hutchins DA, Webb EA.

Environ Microbiol. 2019 Feb 6. doi: 10.1111/1462-2920.14552. [Epub ahead of print]

PMID:
30724442
3.

Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing.

Saito MA, Bertrand EM, Duffy ME, Gaylord DA, Held NA, Hervey WJ, Hettich RL, Jagtap P, Janech MG, Kinkade DB, Leary D, McIlvin M, Moore E, Morris R, Neely BA, Nunn B, Saunders JK, Shepherd A, Symmonds N, Walsh D.

J Proteome Res. 2019 Jan 31. doi: 10.1021/acs.jproteome.8b00761. [Epub ahead of print]

PMID:
30702898
4.

Copper stress in Staphylococcus aureus leads to adaptive changes in central carbon metabolism.

Tarrant E, P Riboldi G, McIlvin MR, Stevenson J, Barwinska-Sendra A, Stewart LJ, Saito MA, Waldron KJ.

Metallomics. 2019 Jan 23;11(1):183-200. doi: 10.1039/c8mt00239h.

PMID:
30443649
5.

Heterozygous huntingtin promotes cadmium neurotoxicity and neurodegeneration in striatal cells via altered metal transport and protein kinase C delta dependent oxidative stress and apoptosis signaling mechanisms.

Kwakye GF, Jiménez JA, Thomas MG, Kingsley BA, McIIvin M, Saito MA, Korley EM.

Neurotoxicology. 2019 Jan;70:48-61. doi: 10.1016/j.neuro.2018.10.012. Epub 2018 Nov 3.

PMID:
30399392
6.

Transcriptomic and proteomic responses of the oceanic diatom Pseudo-nitzschia granii to iron limitation.

Cohen NR, Gong W, Moran DM, McIlvin MR, Saito MA, Marchetti A.

Environ Microbiol. 2018 Aug;20(8):3109-3126. doi: 10.1111/1462-2920.14386. Epub 2018 Sep 19.

PMID:
30117243
7.

The Role of External Inputs and Internal Cycling in Shaping the Global Ocean Cobalt Distribution: Insights From the First Cobalt Biogeochemical Model.

Tagliabue A, Hawco NJ, Bundy RM, Landing WM, Milne A, Morton PL, Saito MA.

Global Biogeochem Cycles. 2018 Apr;32(4):594-616. doi: 10.1002/2017GB005830. Epub 2018 Apr 16.

8.

Functional Genomics and Phylogenetic Evidence Suggest Genus-Wide Cobalamin Production by the Globally Distributed Marine Nitrogen Fixer Trichodesmium.

Walworth NG, Lee MD, Suffridge C, Qu P, Fu FX, Saito MA, Webb EA, Sañudo-Wilhelmy SA, Hutchins DA.

Front Microbiol. 2018 Feb 13;9:189. doi: 10.3389/fmicb.2018.00189. eCollection 2018.

9.

Nutrient co-limited Trichodesmium as nitrogen source or sink in a future ocean.

Walworth NG, Fu FX, Lee MD, Cai X, Saito MA, Webb EA, Hutchins DA.

Appl Environ Microbiol. 2017 Nov 27. pii: AEM.02137-17. doi: 10.1128/AEM.02137-17. [Epub ahead of print]

10.

Transcriptional Activities of the Microbial Consortium Living with the Marine Nitrogen-Fixing Cyanobacterium Trichodesmium Reveal Potential Roles in Community-Level Nitrogen Cycling.

Lee MD, Webb EA, Walworth NG, Fu FX, Held NA, Saito MA, Hutchins DA.

Appl Environ Microbiol. 2017 Dec 15;84(1). pii: e02026-17. doi: 10.1128/AEM.02026-17. Print 2018 Jan 1.

11.

Comment on "The complex effects of ocean acidification on the prominent N2-fixing cyanobacterium Trichodesmium".

Hutchins DA, Fu F, Walworth NG, Lee MD, Saito MA, Webb EA.

Science. 2017 Sep 15;357(6356). pii: eaao0067. doi: 10.1126/science.aao0067.

PMID:
28912213
12.

Physiological and proteomic characterization of light adaptations in marine Synechococcus.

Mackey KRM, Post AF, McIlvin MR, Saito MA.

Environ Microbiol. 2017 Jun;19(6):2348-2365. doi: 10.1111/1462-2920.13744. Epub 2017 May 29.

PMID:
28371229
13.

α-Synuclein Enhances Cadmium Uptake and Neurotoxicity via Oxidative Stress and Caspase Activated Cell Death Mechanisms in a Dopaminergic Cell Model of Parkinson's Disease.

Chong W, Jiménez J, McIIvin M, Saito MA, Kwakye GF.

Neurotox Res. 2017 Aug;32(2):231-246. doi: 10.1007/s12640-017-9725-x. Epub 2017 Mar 28.

PMID:
28353032
14.

The integral role of iron in ocean biogeochemistry.

Tagliabue A, Bowie AR, Boyd PW, Buck KN, Johnson KS, Saito MA.

Nature. 2017 Mar 1;543(7643):51-59. doi: 10.1038/nature21058. Review.

PMID:
28252066
15.

Siderophore-based microbial adaptations to iron scarcity across the eastern Pacific Ocean.

Boiteau RM, Mende DR, Hawco NJ, McIlvin MR, Fitzsimmons JN, Saito MA, Sedwick PN, DeLong EF, Repeta DJ.

Proc Natl Acad Sci U S A. 2016 Dec 13;113(50):14237-14242. Epub 2016 Dec 1.

16.

Mechanisms of increased Trichodesmium fitness under iron and phosphorus co-limitation in the present and future ocean.

Walworth NG, Fu FX, Webb EA, Saito MA, Moran D, Mcllvin MR, Lee MD, Hutchins DA.

Nat Commun. 2016 Jun 27;7:12081. doi: 10.1038/ncomms12081.

17.

Irreversibly increased nitrogen fixation in Trichodesmium experimentally adapted to elevated carbon dioxide.

Hutchins DA, Walworth NG, Webb EA, Saito MA, Moran D, McIlvin MR, Gale J, Fu FX.

Nat Commun. 2015 Sep 1;6:8155. doi: 10.1038/ncomms9155.

18.

Divergent responses of Atlantic coastal and oceanic Synechococcus to iron limitation.

Mackey KR, Post AF, McIlvin MR, Cutter GA, John SG, Saito MA.

Proc Natl Acad Sci U S A. 2015 Aug 11;112(32):9944-9. doi: 10.1073/pnas.1509448112. Epub 2015 Jul 27.

19.

Co-occurring Synechococcus ecotypes occupy four major oceanic regimes defined by temperature, macronutrients and iron.

Sohm JA, Ahlgren NA, Thomson ZJ, Williams C, Moffett JW, Saito MA, Webb EA, Rocap G.

ISME J. 2016 Feb;10(2):333-45. doi: 10.1038/ismej.2015.115. Epub 2015 Jul 24.

20.

Needles in the blue sea: sub-species specificity in targeted protein biomarker analyses within the vast oceanic microbial metaproteome.

Saito MA, Dorsk A, Post AF, McIlvin MR, Rappé MS, DiTullio GR, Moran DM.

Proteomics. 2015 Oct;15(20):3521-31. doi: 10.1002/pmic.201400630. Epub 2015 Jul 22.

PMID:
26097212
21.

Rapid and gradual modes of aerosol trace metal dissolution in seawater.

Mackey KR, Chien CT, Post AF, Saito MA, Paytan A.

Front Microbiol. 2015 Jan 21;5:794. doi: 10.3389/fmicb.2014.00794. eCollection 2014.

22.

Persistence of deeply sourced iron in the Pacific Ocean.

Horner TJ, Williams HM, Hein JR, Saito MA, Burton KW, Halliday AN, Nielsen SG.

Proc Natl Acad Sci U S A. 2015 Feb 3;112(5):1292-7. doi: 10.1073/pnas.1420188112. Epub 2015 Jan 20.

23.

Genomic and proteomic characterization of "Candidatus Nitrosopelagicus brevis": an ammonia-oxidizing archaeon from the open ocean.

Santoro AE, Dupont CL, Richter RA, Craig MT, Carini P, McIlvin MR, Yang Y, Orsi WD, Moran DM, Saito MA.

Proc Natl Acad Sci U S A. 2015 Jan 27;112(4):1173-8. doi: 10.1073/pnas.1416223112. Epub 2015 Jan 13.

24.

Multiple nutrient stresses at intersecting Pacific Ocean biomes detected by protein biomarkers.

Saito MA, McIlvin MR, Moran DM, Goepfert TJ, DiTullio GR, Post AF, Lamborg CH.

Science. 2014 Sep 5;345(6201):1173-7. doi: 10.1126/science.1256450. Erratum in: Science. 2014 Jan 30;347(6211):DOI: 10.1126/science.aaa7328.

25.

A global ocean inventory of anthropogenic mercury based on water column measurements.

Lamborg CH, Hammerschmidt CR, Bowman KL, Swarr GJ, Munson KM, Ohnemus DC, Lam PJ, Heimbürger LE, Rijkenberg MJ, Saito MA.

Nature. 2014 Aug 7;512(7512):65-8. doi: 10.1038/nature13563.

PMID:
25100482
26.

Metals in marine biochemistry.

Austin RN, Saito MA.

Metallomics. 2014 Jun;6(6):1105-6. doi: 10.1039/c4mt90017k.

PMID:
24830347
27.

Proteomic responses of oceanic Synechococcus WH8102 to phosphate and zinc scarcity and cadmium additions.

Cox AD, Saito MA.

Front Microbiol. 2013 Dec 17;4:387. doi: 10.3389/fmicb.2013.00387. eCollection 2013.

28.

Synthesis, structure and spectroscopic analyses of aquachloridooxidodiperoxidomolybdate(VI).

Saito MA, Hashimoto M.

Dalton Trans. 2014 Jan 14;43(2):402-5. doi: 10.1039/c3dt52848k. Epub 2013 Nov 8.

PMID:
24212334
29.

Effect of temperature on photosynthesis and growth in marine Synechococcus spp.

Mackey KR, Paytan A, Caldeira K, Grossman AR, Moran D, McIlvin M, Saito MA.

Plant Physiol. 2013 Oct;163(2):815-29. doi: 10.1104/pp.113.221937. Epub 2013 Aug 15.

30.

Authigenic iron oxide proxies for marine zinc over geological time and implications for eukaryotic metallome evolution.

Robbins LJ, Lalonde SV, Saito MA, Planavsky NJ, Mloszewska AM, Pecoits E, Scott C, Dupont CL, Kappler A, Konhauser KO.

Geobiology. 2013 Jul;11(4):295-306. doi: 10.1111/gbi.12036. Epub 2013 Apr 22.

PMID:
23601652
31.

Dissolved and particulate trace metal micronutrients under the McMurdo Sound seasonal sea ice: basal sea ice communities as a capacitor for iron.

Noble AE, Moran DM, Allen AE, Saito MA.

Front Chem. 2013 Oct 30;1:25. doi: 10.3389/fchem.2013.00025. eCollection 2013.

32.

Identifying reference genes with stable expression from high throughput sequence data.

Alexander H, Jenkins BD, Rynearson TA, Saito MA, Mercier ML, Dyhrman ST.

Front Microbiol. 2012 Nov 9;3:385. doi: 10.3389/fmicb.2012.00385. eCollection 2012.

33.

Influence of cobalamin scarcity on diatom molecular physiology and identification of a cobalamin acquisition protein.

Bertrand EM, Allen AE, Dupont CL, Norden-Krichmar TM, Bai J, Valas RE, Saito MA.

Proc Natl Acad Sci U S A. 2012 Jun 26;109(26):E1762-71. doi: 10.1073/pnas.1201731109. Epub 2012 May 31.

34.

Enhanced solubility and ecological impact of atmospheric phosphorus deposition upon extended seawater exposure.

Mackey KR, Roberts K, Lomas MW, Saito MA, Post AF, Paytan A.

Environ Sci Technol. 2012 Oct 2;46(19):10438-46. doi: 10.1021/es3007996. Epub 2012 May 18.

PMID:
22574853
35.

The transcriptome and proteome of the diatom Thalassiosira pseudonana reveal a diverse phosphorus stress response.

Dyhrman ST, Jenkins BD, Rynearson TA, Saito MA, Mercier ML, Alexander H, Whitney LP, Drzewianowski A, Bulygin VV, Bertrand EM, Wu Z, Benitez-Nelson C, Heithoff A.

PLoS One. 2012;7(3):e33768. doi: 10.1371/journal.pone.0033768. Epub 2012 Mar 29.

36.

The rise of oxygen and aerobic biochemistry.

Saito MA.

Structure. 2012 Jan 11;20(1):1-2. doi: 10.1016/j.str.2011.12.006.

37.

Proteome changes driven by phosphorus deficiency and recovery in the brown tide-forming alga Aureococcus anophagefferens.

Wurch LL, Bertrand EM, Saito MA, Van Mooy BA, Dyhrman ST.

PLoS One. 2011;6(12):e28949. doi: 10.1371/journal.pone.0028949. Epub 2011 Dec 14.

38.

Examination of microbial proteome preservation techniques applicable to autonomous environmental sample collection.

Saito MA, Bulygin VV, Moran DM, Taylor C, Scholin C.

Front Microbiol. 2011 Nov 7;2:215. doi: 10.3389/fmicb.2011.00215. eCollection 2011.

39.

Iron limitation of a springtime bacterial and phytoplankton community in the ross sea: implications for vitamin b(12) nutrition.

Bertrand EM, Saito MA, Lee PA, Dunbar RB, Sedwick PN, Ditullio GR.

Front Microbiol. 2011 Aug 15;2:160. doi: 10.3389/fmicb.2011.00160. eCollection 2011.

40.

Transcriptome response of high- and low-light-adapted Prochlorococcus strains to changing iron availability.

Thompson AW, Huang K, Saito MA, Chisholm SW.

ISME J. 2011 Oct;5(10):1580-94. doi: 10.1038/ismej.2011.49. Epub 2011 May 12.

41.

Vitamin B₁₂ biosynthesis gene diversity in the Ross Sea: the identification of a new group of putative polar B₁₂ biosynthesizers.

Bertrand EM, Saito MA, Jeon YJ, Neilan BA.

Environ Microbiol. 2011 May;13(5):1285-98. doi: 10.1111/j.1462-2920.2011.02428.x. Epub 2011 Mar 16.

PMID:
21410623
42.

Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics.

Gobler CJ, Berry DL, Dyhrman ST, Wilhelm SW, Salamov A, Lobanov AV, Zhang Y, Collier JL, Wurch LL, Kustka AB, Dill BD, Shah M, VerBerkmoes NC, Kuo A, Terry A, Pangilinan J, Lindquist EA, Lucas S, Paulsen IT, Hattenrath-Lehmann TK, Talmage SC, Walker EA, Koch F, Burson AM, Marcoval MA, Tang YZ, Lecleir GR, Coyne KJ, Berg GM, Bertrand EM, Saito MA, Gladyshev VN, Grigoriev IV.

Proc Natl Acad Sci U S A. 2011 Mar 15;108(11):4352-7. doi: 10.1073/pnas.1016106108. Epub 2011 Feb 23.

43.

Iron conservation by reduction of metalloenzyme inventories in the marine diazotroph Crocosphaera watsonii.

Saito MA, Bertrand EM, Dutkiewicz S, Bulygin VV, Moran DM, Monteiro FM, Follows MJ, Valois FW, Waterbury JB.

Proc Natl Acad Sci U S A. 2011 Feb 8;108(6):2184-9. doi: 10.1073/pnas.1006943108. Epub 2011 Jan 19.

44.

Empirical bayes analysis of sequencing-based transcriptional profiling without replicates.

Wu Z, Jenkins BD, Rynearson TA, Dyhrman ST, Saito MA, Mercier M, Whitney LP.

BMC Bioinformatics. 2010 Nov 16;11:564. doi: 10.1186/1471-2105-11-564.

45.

Biogeochemistry: Less nickel for more oxygen.

Saito MA.

Nature. 2009 Apr 9;458(7239):714-5. doi: 10.1038/458714a. No abstract available.

PMID:
19360074
46.

Use of a modified, high-sensitivity, anodic stripping voltammetry method for determination of zinc speciation in the North Atlantic Ocean.

Jakuba RW, Moffett JW, Saito MA.

Anal Chim Acta. 2008 May 5;614(2):143-52. doi: 10.1016/j.aca.2008.03.006. Epub 2008 Mar 13.

PMID:
18420044
47.

Biochemistry: a cadmium enzyme from a marine diatom.

Lane TW, Saito MA, George GN, Pickering IJ, Prince RC, Morel FM.

Nature. 2005 May 5;435(7038):42.

PMID:
15875011
48.

The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism.

Armbrust EV, Berges JA, Bowler C, Green BR, Martinez D, Putnam NH, Zhou S, Allen AE, Apt KE, Bechner M, Brzezinski MA, Chaal BK, Chiovitti A, Davis AK, Demarest MS, Detter JC, Glavina T, Goodstein D, Hadi MZ, Hellsten U, Hildebrand M, Jenkins BD, Jurka J, Kapitonov VV, Kröger N, Lau WW, Lane TW, Larimer FW, Lippmeier JC, Lucas S, Medina M, Montsant A, Obornik M, Parker MS, Palenik B, Pazour GJ, Richardson PM, Rynearson TA, Saito MA, Schwartz DC, Thamatrakoln K, Valentin K, Vardi A, Wilkerson FP, Rokhsar DS.

Science. 2004 Oct 1;306(5693):79-86.

49.

Sulfide ameliorates metal toxicity for deep-sea hydrothermal vent archaea.

Edgcomb VP, Molyneaux SJ, Saito MA, Lloyd K, Böer S, Wirsen CO, Atkins MS, Teske A.

Appl Environ Microbiol. 2004 Apr;70(4):2551-5.

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