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A Riboflavin Transporter in Bdellovibrio exovorous JSS.

Rodionova IA, Heidari Tajabadi F, Zhang Z, Rodionov DA, Saier MH Jr.

J Mol Microbiol Biotechnol. 2019 Sep 11:1-8. doi: 10.1159/000501354. [Epub ahead of print]


Cryo-EM structure of OSCA1.2 from Oryza sativa elucidates the mechanical basis of potential membrane hyperosmolality gating.

Maity K, Heumann JM, McGrath AP, Kopcho NJ, Hsu PK, Lee CW, Mapes JH, Garza D, Krishnan S, Morgan GP, Hendargo KJ, Klose T, Rees SD, Medrano-Soto A, Saier MH Jr, Piñeros M, Komives EA, Schroeder JI, Chang G, Stowell MHB.

Proc Natl Acad Sci U S A. 2019 Jul 9;116(28):14309-14318. doi: 10.1073/pnas.1900774116. Epub 2019 Jun 21.


Comparative genomics of the transportome of Ten Treponema species.

Buyuktimkin B, Zafar H, Saier MH Jr.

Microb Pathog. 2019 Jul;132:87-99. doi: 10.1016/j.micpath.2019.04.034. Epub 2019 Apr 25.


Understanding the Genetic Code.

Saier MH Jr.

J Bacteriol. 2019 Jul 10;201(15). pii: e00091-19. doi: 10.1128/JB.00091-19. Print 2019 Aug 1. Review.


Comparative genomics of transport proteins in seven Bacteroides species.

Zafar H, Saier MH Jr.

PLoS One. 2018 Dec 5;13(12):e0208151. doi: 10.1371/journal.pone.0208151. eCollection 2018.


The uridylyltransferase GlnD and tRNA modification GTPase MnmE allosterically control Escherichia coli folylpoly-γ-glutamate synthase FolC.

Rodionova IA, Goodacre N, Do J, Hosseinnia A, Babu M, Uetz P, Saier MH Jr.

J Biol Chem. 2018 Oct 5;293(40):15725-15732. doi: 10.1074/jbc.RA118.004425. Epub 2018 Aug 8.


Bioinformatic characterization of the Anoctamin Superfamily of Ca2+-activated ion channels and lipid scramblases.

Medrano-Soto A, Moreno-Hagelsieb G, McLaughlin D, Ye ZS, Hendargo KJ, Saier MH Jr.

PLoS One. 2018 Mar 26;13(3):e0192851. doi: 10.1371/journal.pone.0192851. eCollection 2018.


The Nitrogen Regulatory PII Protein (GlnB) and N-Acetylglucosamine 6-Phosphate Epimerase (NanE) Allosterically Activate Glucosamine 6-Phosphate Deaminase (NagB) in Escherichia coli.

Rodionova IA, Goodacre N, Babu M, Emili A, Uetz P, Saier MH Jr.

J Bacteriol. 2018 Feb 7;200(5). pii: e00691-17. doi: 10.1128/JB.00691-17. Print 2018 Mar 1.


Comparative Analyses of Transport Proteins Encoded within the Genomes of Bdellovibrio bacteriovorus HD100 and Bdellovibrio exovorus JSS.

Heidari Tajabadi F, Medrano-Soto A, Ahmadzadeh M, Salehi Jouzani G, Saier MH Jr.

J Mol Microbiol Biotechnol. 2017;27(6):332-349. doi: 10.1159/000484563. Epub 2017 Dec 7.


The Membrane Attack Complex/Perforin Superfamily.

Moreno-Hagelsieb G, Vitug B, Medrano-Soto A, Saier MH Jr.

J Mol Microbiol Biotechnol. 2017;27(4):252-267. doi: 10.1159/000481286. Epub 2017 Nov 17.


Hopping into a hot seat: Role of DNA structural features on IS5-mediated gene activation and inactivation under stress.

Humayun MZ, Zhang Z, Butcher AM, Moshayedi A, Saier MH Jr.

PLoS One. 2017 Jun 30;12(6):e0180156. doi: 10.1371/journal.pone.0180156. eCollection 2017.


The phosphocarrier protein HPr of the bacterial phosphotransferase system globally regulates energy metabolism by directly interacting with multiple enzymes in Escherichia coli.

Rodionova IA, Zhang Z, Mehla J, Goodacre N, Babu M, Emili A, Uetz P, Saier MH Jr.

J Biol Chem. 2017 Aug 25;292(34):14250-14257. doi: 10.1074/jbc.M117.795294. Epub 2017 Jun 20.


Science, Innovation and the Future of Humanity.

Saier MH Jr, Trevors JT.

J Mol Microbiol Biotechnol. 2017;27(2):128-132. doi: 10.1159/000467401. Epub 2017 Apr 28. No abstract available.


Comparative genomics of transport proteins in probiotic and pathogenic Escherichia coli and Salmonella enterica strains.

Do J, Zafar H, Saier MH Jr.

Microb Pathog. 2017 Jun;107:106-115. doi: 10.1016/j.micpath.2017.03.022. Epub 2017 Mar 24.


Transposon-mediated directed mutation in bacteria and eukaryotes.

Saier MH Jr, Kukita C, Zhang Z.

Front Biosci (Landmark Ed). 2017 Mar 1;22:1458-1468. Review.


Environment-directed activation of the Escherichia coliflhDC operon by transposons.

Zhang Z, Kukita C, Humayun MZ, Saier MH.

Microbiology. 2017 Apr;163(4):554-569. doi: 10.1099/mic.0.000426. Epub 2017 Apr 12.


Difference distance map data of alternative crystal forms of UlaA.

Vastermark A, Driker A, Weng J, Li X, Wang J, Saier MH Jr.

Data Brief. 2016 Dec 3;10:198-201. eCollection 2017 Feb.


Characterization of the Tetraspan Junctional Complex (4JC) superfamily.

Chou A, Lee A, Hendargo KJ, Reddy VS, Shlykov MA, Kuppusamykrishnan H, Medrano-Soto A, Saier MH Jr.

Biochim Biophys Acta Biomembr. 2017 Mar;1859(3):402-414. doi: 10.1016/j.bbamem.2016.11.015. Epub 2016 Dec 2.


Analysis of 58 Families of Holins Using a Novel Program, PhyST.

Kuppusamykrishnan H, Chau LM, Moreno-Hagelsieb G, Saier MH Jr.

J Mol Microbiol Biotechnol. 2016;26(6):381-388. Epub 2016 Aug 24.


The V-motifs facilitate the substrate capturing step of the PTS elevator mechanism.

Vastermark A, Driker A, Weng J, Li X, Wang J, Saier MH.

J Struct Biol. 2016 Dec;196(3):496-502. doi: 10.1016/j.jsb.2016.10.002. Epub 2016 Oct 6.


Comparative analyses of transport proteins encoded within the genomes of Leptospira species.

Buyuktimkin B, Saier MH Jr.

Microb Pathog. 2016 Sep;98:118-31. doi: 10.1016/j.micpath.2016.06.013. Epub 2016 Jun 11.


Time to Stop Holding the Elevator: A New Piece of the Transport Protein Mechanism Puzzle.

Vastermark A, Saier MH Jr.

Structure. 2016 Jun 7;24(6):845-6. doi: 10.1016/j.str.2016.05.010.


Transport protein evolution deduced from analysis of sequence, topology and structure.

Saier MH Jr.

Curr Opin Struct Biol. 2016 Jun;38:9-17. doi: 10.1016/ Epub 2016 Jun 4. Review.


Properties and Phylogeny of 76 Families of Bacterial and Eukaryotic Organellar Outer Membrane Pore-Forming Proteins.

Reddy BL, Saier MH Jr.

PLoS One. 2016 Apr 11;11(4):e0152733. doi: 10.1371/journal.pone.0152733. eCollection 2016.


The Transporter Classification Database (TCDB): recent advances.

Saier MH Jr, Reddy VS, Tsu BV, Ahmed MS, Li C, Moreno-Hagelsieb G.

Nucleic Acids Res. 2016 Jan 4;44(D1):D372-9. doi: 10.1093/nar/gkv1103. Epub 2015 Nov 5.


Evolutionary Analysis and Classification of OATs, OCTs, OCTNs, and Other SLC22 Transporters: Structure-Function Implications and Analysis of Sequence Motifs.

Zhu C, Nigam KB, Date RC, Bush KT, Springer SA, Saier MH Jr, Wu W, Nigam SK.

PLoS One. 2015 Nov 4;10(11):e0140569. doi: 10.1371/journal.pone.0140569. eCollection 2015.


The LysE Superfamily of Transport Proteins Involved in Cell Physiology and Pathogenesis.

Tsu BV, Saier MH Jr.

PLoS One. 2015 Oct 16;10(10):e0137184. doi: 10.1371/journal.pone.0137184. eCollection 2015.


Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.

Babbitt PC, Bagos PG, Bairoch A, Bateman A, Chatonnet A, Chen MJ, Craik DJ, Finn RD, Gloriam D, Haft DH, Henrissat B, Holliday GL, Isberg V, Kaas Q, Landsman D, Lenfant N, Manning G, Nagano N, Srinivasan N, O'Donovan C, Pruitt KD, Sowdhamini R, Rawlings ND, Saier MH Jr, Sharman JL, Spedding M, Tsirigos KD, Vastermark A, Vriend G.

Database (Oxford). 2015 Jul 11;2015:bav063. doi: 10.1093/database/bav063. eCollection 2015.


Comparative genomic analyses of transport proteins encoded within the genomes of Leptospira species.

Buyuktimkin B, Saier MH Jr.

Microb Pathog. 2015 Nov;88:52-64. doi: 10.1016/j.micpath.2015.07.019. Epub 2015 Aug 3.


Control of Transposon-Mediated Directed Mutation by the Escherichia coli Phosphoenolpyruvate:Sugar Phosphotransferase System.

Saier MH Jr, Zhang Z.

J Mol Microbiol Biotechnol. 2015;25(2-3):226-33. doi: 10.1159/000375375. Epub 2015 Jul 9. Review.


The Bacterial Phosphotransferase System: New Frontiers 50 Years after Its Discovery.

Saier MH Jr.

J Mol Microbiol Biotechnol. 2015;25(2-3):73-8. doi: 10.1159/000381215. Epub 2015 Jul 9.


Autism and our intestinal microbiota.

Reddy BL, Saier MH.

J Mol Microbiol Biotechnol. 2015;25(1):51-5. doi: 10.1159/000375303. Epub 2015 Mar 3. Review.


The complexity, challenges and benefits of comparing two transporter classification systems in TCDB and Pfam.

Chiang Z, Vastermark A, Punta M, Coggill PC, Mistry J, Finn RD, Saier MH Jr.

Brief Bioinform. 2015 Sep;16(5):865-72. doi: 10.1093/bib/bbu053. Epub 2015 Jan 21.


Conserved movement of TMS11 between occluded conformations of LacY and XylE of the major facilitator superfamily suggests a similar hinge-like mechanism.

Västermark Å, Driker A, Li J, Saier MH Jr.

Proteins. 2015 Apr;83(4):735-45. doi: 10.1002/prot.24755. Epub 2015 Feb 7.


Psychobiotics and their involvement in mental health.

Tang F, Reddy BL, Saier MH Jr.

J Mol Microbiol Biotechnol. 2014;24(4):211-4. doi: 10.1159/000366281. Epub 2014 Aug 30. No abstract available.


Holins in bacteria, eukaryotes, and archaea: multifunctional xenologues with potential biotechnological and biomedical applications.

Saier MH Jr, Reddy BL.

J Bacteriol. 2015 Jan 1;197(1):7-17. doi: 10.1128/JB.02046-14. Epub 2014 Aug 25. Review.


Transposon-mediated directed mutation controlled by DNA binding proteins in Escherichia coli.

Saier MH Jr, Zhang Z.

Front Microbiol. 2014 Aug 1;5:390. doi: 10.3389/fmicb.2014.00390. eCollection 2014. No abstract available.


Comparative genomic analysis of integral membrane transport proteins in ciliates.

Kumar U, Saier MH Jr.

J Eukaryot Microbiol. 2015 Mar-Apr;62(2):167-87. doi: 10.1111/jeu.12156. Epub 2014 Dec 5.


Conformational transition pathway in the inhibitor binding process of human monoacylglycerol lipase.

Chen H, Tian R, Ni Z, Zhang Z, Chen H, Guo Q, Vastermark A.

Protein J. 2014 Dec;33(6):503-11. doi: 10.1007/s10930-014-9572-z. Erratum in: Protein J. 2014 Dec;33(6):512. Vastermark, Ake [added]; Saier, Milton H Jr [removed].


Expansion of the APC superfamily of secondary carriers.

Vastermark A, Wollwage S, Houle ME, Rio R, Saier MH Jr.

Proteins. 2014 Oct;82(10):2797-811. doi: 10.1002/prot.24643. Epub 2014 Jul 31.


Reliability of nine programs of topological predictions and their application to integral membrane channel and carrier proteins.

Reddy A, Cho J, Ling S, Reddy V, Shlykov M, Saier MH.

J Mol Microbiol Biotechnol. 2014;24(3):161-90. doi: 10.1159/000363506. Epub 2014 Jun 27.


Regulation of crp gene expression by the catabolite repressor/activator, Cra, in Escherichia coli.

Zhang Z, Aboulwafa M, Saier MH.

J Mol Microbiol Biotechnol. 2014;24(3):135-41. doi: 10.1159/000362722. Epub 2014 Jun 7.


Establishing homology between mitochondrial calcium uniporters, prokaryotic magnesium channels and chlamydial IncA proteins.

Lee A, Vastermark A, Saier MH Jr.

Microbiology. 2014 Aug;160(Pt 8):1679-89. doi: 10.1099/mic.0.077776-0. Epub 2014 May 28.


Transport proteins promoting Escherichia coli pathogenesis.

Tang F, Saier MH Jr.

Microb Pathog. 2014 Jun-Jul;71-72:41-55. doi: 10.1016/j.micpath.2014.03.008. Epub 2014 Apr 18.


Major Facilitator Superfamily (MFS) evolved without 3-transmembrane segment unit rearrangements.

Västermark A, Saier MH.

Proc Natl Acad Sci U S A. 2014 Apr 1;111(13):E1162-3. doi: 10.1073/pnas.1400016111. Epub 2014 Feb 24. No abstract available.


The involvement of transport proteins in transcriptional and metabolic regulation.

Västermark A, Saier MH Jr.

Curr Opin Microbiol. 2014 Apr;18:8-15. doi: 10.1016/j.mib.2014.01.002. Epub 2014 Feb 8. Review.


Genetic implication of a novel thiamine transporter in human hypertension.

Zhang K, Huentelman MJ, Rao F, Sun EI, Corneveaux JJ, Schork AJ, Wei Z, Waalen J, Miramontes-Gonzalez JP, Hightower CM, Maihofer AX, Mahata M, Pastinen T, Ehret GB; International Consortium for Blood Pressure Genome-Wide Association Studies, Schork NJ, Eskin E, Nievergelt CM, Saier MH Jr, O'Connor DT.

J Am Coll Cardiol. 2014 Apr 22;63(15):1542-55. doi: 10.1016/j.jacc.2014.01.007. Epub 2014 Feb 5.


Comparative genomics of transport proteins in developmental bacteria: Myxococcus xanthus and Streptomyces coelicolor.

Getsin I, Nalbandian GH, Yee DC, Vastermark A, Paparoditis PC, Reddy VS, Saier MH Jr.

BMC Microbiol. 2013 Dec 5;13:279. doi: 10.1186/1471-2180-13-279.

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