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Items: 41

1.

An Attenuated Zika Virus Encoding Non-Glycosylated Envelope (E) and Non-Structural Protein 1 (NS1) Confers Complete Protection against Lethal Challenge in a Mouse Model.

Annamalai AS, Pattnaik A, Sahoo BR, Guinn ZP, Bullard BL, Weaver EA, Steffen D, Natarajan SK, Petro TM, Pattnaik AK.

Vaccines (Basel). 2019 Sep 12;7(3). pii: E112. doi: 10.3390/vaccines7030112.

2.

Diverse Structural Conversion and Aggregation Pathways of Alzheimer's Amyloid-β (1-40).

Lin Y, Sahoo BR, Ozawa D, Kinoshita M, Kang J, Lim MH, Okumura M, Huh YH, Moon E, Jang JH, Lee HJ, Ryu KY, Ham S, Won HS, Ryu KS, Sugiki T, Bang JK, Hoe HS, Fujiwara T, Ramamoorthy A, Lee YH.

ACS Nano. 2019 Aug 27;13(8):8766-8783. doi: 10.1021/acsnano.9b01578. Epub 2019 Jul 24.

PMID:
31310506
3.

Self-Assembly of Polymer-Encased Lipid Nanodiscs and Membrane Protein Reconstitution.

Sahoo BR, Genjo T, Moharana KC, Ramamoorthy A.

J Phys Chem B. 2019 May 30;123(21):4562-4570. doi: 10.1021/acs.jpcb.9b03681. Epub 2019 May 16.

PMID:
31050900
4.

A cationic polymethacrylate-copolymer acts as an agonist for β-amyloid and an antagonist for amylin fibrillation.

Sahoo BR, Genjo T, Nakayama TW, Stoddard AK, Ando T, Yasuhara K, Fierke CA, Ramamoorthy A.

Chem Sci. 2019 Feb 27;10(14):3976-3986. doi: 10.1039/c8sc05771k. eCollection 2019 Apr 14.

5.

Zinc boosts EGCG's hIAPP amyloid Inhibition both in solution and membrane.

Lee YH, Lin Y, Cox SJ, Kinoshita M, Sahoo BR, Ivanova M, Ramamoorthy A.

Biochim Biophys Acta Proteins Proteom. 2019 May;1867(5):529-536. doi: 10.1016/j.bbapap.2018.11.006. Epub 2018 Nov 22.

PMID:
30468883
6.

Alzheimer's amyloid-beta intermediates generated using polymer-nanodiscs.

Sahoo BR, Genjo T, Bekier M, Cox SJ, Stoddard AK, Ivanova M, Yasuhara K, Fierke CA, Wang Y, Ramamoorthy A.

Chem Commun (Camb). 2018 Nov 13;54(91):12883-12886. doi: 10.1039/c8cc07921h.

PMID:
30379172
7.

The ATP Transporter VNUT Mediates Induction of Dectin-1-Triggered Candida Nociception.

Maruyama K, Takayama Y, Sugisawa E, Yamanoi Y, Yokawa T, Kondo T, Ishibashi KI, Sahoo BR, Takemura N, Mori Y, Kanemaru H, Kumagai Y, Martino MM, Yoshioka Y, Nishijo H, Tanaka H, Sasaki A, Ohno N, Iwakura Y, Moriyama Y, Nomura M, Akira S, Tominaga M.

iScience. 2018 Aug 31;6:306-318. doi: 10.1016/j.isci.2018.08.007. Epub 2018 Aug 15.

8.

Nanodisc-Forming Scaffold Protein Promoted Retardation of Amyloid-Beta Aggregation.

Sahoo BR, Genjo T, Cox SJ, Stoddard AK, Anantharamaiah GM, Fierke C, Ramamoorthy A.

J Mol Biol. 2018 Oct 19;430(21):4230-4244. doi: 10.1016/j.jmb.2018.08.018. Epub 2018 Aug 28.

9.

Cytochrome-P450-Induced Ordering of Microsomal Membranes Modulates Affinity for Drugs.

Barnaba C, Sahoo BR, Ravula T, Medina-Meza IG, Im SC, Anantharamaiah GM, Waskell L, Ramamoorthy A.

Angew Chem Int Ed Engl. 2018 Mar 19;57(13):3391-3395. doi: 10.1002/anie.201713167. Epub 2018 Feb 22.

10.

Discovery of a non-nucleoside RNA polymerase inhibitor for blocking Zika virus replication through in silico screening.

Pattnaik A, Palermo N, Sahoo BR, Yuan Z, Hu D, Annamalai AS, Vu HLX, Correas I, Prathipati PK, Destache CJ, Li Q, Osorio FA, Pattnaik AK, Xiang SH.

Antiviral Res. 2018 Mar;151:78-86. doi: 10.1016/j.antiviral.2017.12.016. Epub 2017 Dec 21.

PMID:
29274845
11.

Zika Virus Encoding Nonglycosylated Envelope Protein Is Attenuated and Defective in Neuroinvasion.

Annamalai AS, Pattnaik A, Sahoo BR, Muthukrishnan E, Natarajan SK, Steffen D, Vu HLX, Delhon G, Osorio FA, Petro TM, Xiang SH, Pattnaik AK.

J Virol. 2017 Nov 14;91(23). pii: e01348-17. doi: 10.1128/JVI.01348-17. Print 2017 Dec 1.

12.

Nociceptors Boost the Resolution of Fungal Osteoinflammation via the TRP Channel-CGRP-Jdp2 Axis.

Maruyama K, Takayama Y, Kondo T, Ishibashi KI, Sahoo BR, Kanemaru H, Kumagai Y, Martino MM, Tanaka H, Ohno N, Iwakura Y, Takemura N, Tominaga M, Akira S.

Cell Rep. 2017 Jun 27;19(13):2730-2742. doi: 10.1016/j.celrep.2017.06.002.

13.

Mechanistic and structural basis of bioengineered bovine Cathelicidin-5 with optimized therapeutic activity.

Sahoo BR, Maruyama K, Edula JR, Tougan T, Lin Y, Lee YH, Horii T, Fujiwara T.

Sci Rep. 2017 Mar 21;7:44781. doi: 10.1038/srep44781.

15.

Computational prediction and analysis of potential antigenic CTL epitopes in Zika virus: A first step towards vaccine development.

Dikhit MR, Ansari MY, Vijaymahantesh, Kalyani, Mansuri R, Sahoo BR, Dehury B, Amit A, Topno RK, Sahoo GC, Ali V, Bimal S, Das P.

Infect Genet Evol. 2016 Nov;45:187-197. doi: 10.1016/j.meegid.2016.08.037. Epub 2016 Aug 31.

PMID:
27590716
16.

Membrane Mediated Antimicrobial and Antitumor Activity of Cathelicidin 6: Structural Insights from Molecular Dynamics Simulation on Multi-Microsecond Scale.

Sahoo BR, Fujiwara T.

PLoS One. 2016 Jul 8;11(7):e0158702. doi: 10.1371/journal.pone.0158702. eCollection 2016.

17.

Activity of a novel sulfonamide compound 2-nitro-N-(pyridin-2-ylmethyl)benzenesulfonamide against Leishmania donovani.

Dikhit MR, Purkait B, Singh R, Sahoo BR, Kumar A, Kar RK, Ansari MY, Saini S, Abhishek K, Sahoo GC, Das S, Das P.

Drug Des Devel Ther. 2016 May 26;10:1753-61. doi: 10.2147/DDDT.S96650. eCollection 2016.

18.

Computational elucidation of potential antigenic CTL epitopes in Ebola virus.

Dikhit MR, Kumar S, Vijaymahantesh, Sahoo BR, Mansuri R, Amit A, Yousuf Ansari M, Sahoo GC, Bimal S, Das P.

Infect Genet Evol. 2015 Dec;36:369-375. doi: 10.1016/j.meegid.2015.10.012. Epub 2015 Oct 14.

PMID:
26462623
19.

Structural and functional insights into CARDs of zebrafish (Danio rerio) NOD1 and NOD2, and their interaction with adaptor protein RIP2.

Maharana J, Dehury B, Sahoo JR, Jena I, Bej A, Panda D, Sahoo BR, Patra MC, Pradhan SK.

Mol Biosyst. 2015 Aug;11(8):2324-36. doi: 10.1039/c5mb00212e.

PMID:
26079944
20.

Structural models of zebrafish (Danio rerio) NOD1 and NOD2 NACHT domains suggest differential ATP binding orientations: insights from computational modeling, docking and molecular dynamics simulations.

Maharana J, Sahoo BR, Bej A, Jena I, Parida A, Sahoo JR, Dehury B, Patra MC, Martha SR, Balabantray S, Pradhan SK, Behera BK.

PLoS One. 2015 Mar 26;10(3):e0121415. doi: 10.1371/journal.pone.0121415. eCollection 2015.

21.

Molecular recognition of avirulence protein (avrxa5) by eukaryotic transcription factor xa5 of rice (Oryza sativa L.): insights from molecular dynamics simulations.

Dehury B, Maharana J, Sahoo BR, Sahu J, Sen P, Modi MK, Barooah M.

J Mol Graph Model. 2015 Apr;57:49-61. doi: 10.1016/j.jmgm.2015.01.005. Epub 2015 Jan 19.

PMID:
25655560
22.

Understanding the distinguishable structural and functional features in zebrafish TLR3 and TLR22, and their binding modes with fish dsRNA viruses: an exploratory structural model analysis.

Sahoo BR, Dikhit MR, Bhoi GK, Maharana J, Lenka SK, Dubey PK, Tiwari DK.

Amino Acids. 2015 Feb;47(2):381-400. doi: 10.1007/s00726-014-1872-2. Epub 2014 Dec 9.

PMID:
25488424
23.

LRRsearch: An asynchronous server-based application for the prediction of leucine-rich repeat motifs and an integrative database of NOD-like receptors.

Bej A, Sahoo BR, Swain B, Basu M, Jayasankar P, Samanta M.

Comput Biol Med. 2014 Oct;53:164-70. doi: 10.1016/j.compbiomed.2014.07.016. Epub 2014 Jul 31.

PMID:
25150822
24.

Structural and functional investigation of zebrafish (Danio rerio) NOD1 leucine rich repeat domain and its interaction with iE-DAP.

Maharana J, Sahoo BR, Bej A, Patra MC, Dehury B, Bhoi GK, Lenka SK, Sahoo JR, Rout AK, Behera BK.

Mol Biosyst. 2014 Nov;10(11):2942-53. doi: 10.1039/c4mb00212a.

PMID:
25137227
25.

LeishMicrosatDB: open source database of repeat sequences detected in six fully sequenced Leishmania genomes.

Dikhit MR, Moharana KC, Sahoo BR, Sahoo GC, Das P.

Database (Oxford). 2014 Aug 14;2014. pii: bau078. doi: 10.1093/database/bau078. Print 2014.

26.

Toll-like receptor 22 in Labeo rohita: molecular cloning, characterization, 3D modeling, and expression analysis following ligands stimulation and bacterial infection.

Samanta M, Swain B, Basu M, Mahapatra G, Sahoo BR, Paichha M, Lenka SS, Jayasankar P.

Appl Biochem Biotechnol. 2014 Sep;174(1):309-27. doi: 10.1007/s12010-014-1058-0. Epub 2014 Jul 27.

PMID:
25064133
27.

Structural and dynamic investigation of bovine folate receptor alpha (FOLR1), and role of ultra-high temperature processing on conformational and thermodynamic characteristics of FOLR1-folate complex.

Sahoo BR, Maharana J, Patra MC, Bhoi GK, Lenka SK, Dubey PK, Goyal S, Dehury B, Pradhan SK.

Colloids Surf B Biointerfaces. 2014 Sep 1;121:307-18. doi: 10.1016/j.colsurfb.2014.05.028. Epub 2014 Jun 23.

PMID:
25023142
28.

Exploration of the binding modes of buffalo PGRP1 receptor complexed with meso-diaminopimelic acid and lysine-type peptidoglycans by molecular dynamics simulation and free energy calculation.

Sahoo BR, Dubey PK, Goyal S, Bhoi GK, Lenka SK, Maharana J, Pradhan SK, Kataria RS.

Chem Biol Interact. 2014 Sep 5;220:255-68. doi: 10.1016/j.cbi.2014.06.028. Epub 2014 Jul 8.

PMID:
25014416
29.

Structural insights into the MDP binding and CARD-CARD interaction in zebrafish (Danio rerio) NOD2: a molecular dynamics approach.

Maharana J, Patra MC, De BC, Sahoo BR, Behera BK, De S, Pradhan SK.

J Mol Recognit. 2014 May;27(5):260-75. doi: 10.1002/jmr.2357.

PMID:
24700593
30.

A conformational analysis of mouse Nalp3 domain structures by molecular dynamics simulations, and binding site analysis.

Sahoo BR, Maharana J, Bhoi GK, Lenka SK, Patra MC, Dikhit MR, Dubey PK, Pradhan SK, Behera BK.

Mol Biosyst. 2014 May;10(5):1104-16. doi: 10.1039/c3mb70600a.

PMID:
24595807
31.

Sequence based structural characterization and genetic diversity analysis across coding and promoter regions of goat Toll-like receptor 5 gene.

Goyal S, Dubey PK, Sahoo BR, Mishra SK, Niranjan SK, Singh S, Mahajan R, Kataria RS.

Gene. 2014 May 1;540(2):238-45. doi: 10.1016/j.gene.2014.01.076. Epub 2014 Feb 12.

PMID:
24530311
32.

Computational elucidation of structural basis for ligand binding with Leishmania donovani adenosine kinase.

Kar RK, Ansari MY, Suryadevara P, Sahoo BR, Sahoo GC, Dikhit MR, Das P.

Biomed Res Int. 2013;2013:609289. doi: 10.1155/2013/609289. Epub 2013 Jul 24.

33.

Elucidation of novel structural scaffold in rohu TLR2 and its binding site analysis with peptidoglycan, lipoteichoic acid and zymosan ligands, and downstream MyD88 adaptor protein.

Sahoo BR, Basu M, Swain B, Dikhit MR, Jayasankar P, Samanta M.

Biomed Res Int. 2013;2013:185282. doi: 10.1155/2013/185282. Epub 2013 Jul 15.

34.

Activation of nucleotide-binding oligomerization domain 1 (NOD1) receptor signaling in Labeo rohita by iE-DAP and identification of ligand-binding key motifs in NOD1 by molecular modeling and docking.

Sahoo BR, Swain B, Dikhit MR, Basu M, Bej A, Jayasankar P, Samanta M.

Appl Biochem Biotechnol. 2013 Jul;170(6):1282-309. doi: 10.1007/s12010-013-0263-6. Epub 2013 May 9.

PMID:
23657901
35.

Exploring novel KDR inhibitors based on pharmaco-informatics methodology.

Kar RK, Suryadevara P, Sahoo BR, Sahoo GC, Dikhit MR, Das P.

SAR QSAR Environ Res. 2013;24(3):215-34. doi: 10.1080/1062936X.2013.765912. Epub 2013 Feb 25.

PMID:
23437769
36.

Identification of MDP (muramyl dipeptide)-binding key domains in NOD2 (nucleotide-binding and oligomerization domain-2) receptor of Labeo rohita.

Maharana J, Swain B, Sahoo BR, Dikhit MR, Basu M, Mahapatra AS, Jayasankar P, Samanta M.

Fish Physiol Biochem. 2013 Aug;39(4):1007-23. doi: 10.1007/s10695-012-9758-2. Epub 2012 Dec 20.

PMID:
23255217
37.

Structural insights of rohu TLR3, its binding site analysis with fish reovirus dsRNA, poly I:C and zebrafish TRIF.

Sahoo BR, Basu M, Swain B, Maharana J, Dikhit MR, Jayasankar P, Samanta M.

Int J Biol Macromol. 2012 Nov;51(4):531-43. doi: 10.1016/j.ijbiomac.2012.06.005. Epub 2012 Jun 15.

PMID:
22705475
38.

Induction of toll-like receptor (TLR) 2, and MyD88-dependent TLR- signaling in response to ligand stimulation and bacterial infections in the Indian major carp, mrigal (Cirrhinus mrigala).

Basu M, Swain B, Sahoo BR, Maiti NK, Samanta M.

Mol Biol Rep. 2012 May;39(5):6015-28. doi: 10.1007/s11033-011-1415-9. Epub 2011 Dec 30.

PMID:
22207179
39.

Molecular characterization of toll-like receptor 2 (TLR2), analysis of its inductive expression and associated down-stream signaling molecules following ligands exposure and bacterial infection in the Indian major carp, rohu (Labeo rohita).

Samanta M, Swain B, Basu M, Panda P, Mohapatra GB, Sahoo BR, Maiti NK.

Fish Shellfish Immunol. 2012 Mar;32(3):411-25. doi: 10.1016/j.fsi.2011.11.029. Epub 2011 Dec 7.

PMID:
22173272
40.

3D modeling and molecular dynamics simulation of an immune-regulatory cytokine, interleukin-10, from the Indian major carp, Catla catla.

Sahoo BR, Swain B, Basu M, Panda P, Maiti NK, Samanta M.

J Mol Model. 2012 May;18(5):1713-22. doi: 10.1007/s00894-011-1194-1. Epub 2011 Aug 10.

PMID:
21830101
41.

Molecular characterization of nucleotide binding and oligomerization domain (NOD)-2, analysis of its inductive expression and down-stream signaling following ligands exposure and bacterial infection in rohu (Labeo rohita).

Swain B, Basu M, Sahoo BR, Maiti NK, Routray P, Eknath AE, Samanta M.

Dev Comp Immunol. 2012 Jan;36(1):93-103. doi: 10.1016/j.dci.2011.06.018. Epub 2011 Jul 13.

PMID:
21767564

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