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Items: 1 to 50 of 171

1.

DiscoverY: a classifier for identifying Y chromosome sequences in male assemblies.

Rangavittal S, Stopa N, Tomaszkiewicz M, Sahlin K, Makova KD, Medvedev P.

BMC Genomics. 2019 Aug 9;20(1):641. doi: 10.1186/s12864-019-5996-3.

2.

Deciphering highly similar multigene family transcripts from Iso-Seq data with IsoCon.

Sahlin K, Tomaszkiewicz M, Makova KD, Medvedev P.

Nat Commun. 2018 Nov 2;9(1):4601. doi: 10.1038/s41467-018-06910-x.

3.

Large Scale Identification of Variant Proteins in Glioma Stem Cells.

Mostovenko E, Végvári Á, Rezeli M, Lichti CF, Fenyö D, Wang Q, Lang FF, Sulman EP, Sahlin KB, Marko-Varga G, Nilsson CL.

ACS Chem Neurosci. 2018 Jan 17;9(1):73-79. doi: 10.1021/acschemneuro.7b00362. Epub 2017 Dec 21.

4.

Improving Strength, Power, Muscle Aerobic Capacity, and Glucose Tolerance through Short-term Progressive Strength Training Among Elderly People.

Andersson EA, Frank P, Pontén M, Ekblom B, Ekblom M, Moberg M, Sahlin K.

J Vis Exp. 2017 Jul 5;(125). doi: 10.3791/55518.

5.

Structural Variation Detection with Read Pair Information: An Improved Null Hypothesis Reduces Bias.

Sahlin K, Frånberg M, Arvestad L.

J Comput Biol. 2017 Jun;24(6):581-589. doi: 10.1089/cmb.2016.0124. Epub 2016 Sep 28.

PMID:
27681236
6.

Assembly scaffolding with PE-contaminated mate-pair libraries.

Sahlin K, Chikhi R, Arvestad L.

Bioinformatics. 2016 Jul 1;32(13):1925-32. doi: 10.1093/bioinformatics/btw064. Epub 2016 Mar 2.

PMID:
27153683
7.

Gap Filling as Exact Path Length Problem.

Salmela L, Sahlin K, Mäkinen V, Tomescu AI.

J Comput Biol. 2016 May;23(5):347-61. doi: 10.1089/cmb.2015.0197. Epub 2016 Mar 9.

PMID:
26959081
8.

Strength training improves muscle aerobic capacity and glucose tolerance in elderly.

Frank P, Andersson E, Pontén M, Ekblom B, Ekblom M, Sahlin K.

Scand J Med Sci Sports. 2016 Jul;26(7):764-73. doi: 10.1111/sms.12537. Epub 2015 Aug 14.

PMID:
26271931
9.

Impact of Organized Sports on Activity, Participation, and Quality of Life in People With Neurologic Disabilities.

Sahlin KB, Lexell J.

PM R. 2015 Oct;7(10):1081-1088. doi: 10.1016/j.pmrj.2015.03.019. Epub 2015 Mar 28. Review.

PMID:
25828205
10.

Carbohydrate restricted recovery from long term endurance exercise does not affect gene responses involved in mitochondrial biogenesis in highly trained athletes.

Jensen L, Gejl KD, Ørtenblad N, Nielsen JL, Bech RD, Nygaard T, Sahlin K, Frandsen U.

Physiol Rep. 2015 Feb 12;3(2). pii: e12184. doi: 10.14814/phy2.12184. Print 2015 Feb 1.

11.

Adding strength to endurance training does not enhance aerobic capacity in cyclists.

Psilander N, Frank P, Flockhart M, Sahlin K.

Scand J Med Sci Sports. 2015 Aug;25(4):e353-9. doi: 10.1111/sms.12338. Epub 2014 Dec 1.

PMID:
25438613
12.

Muscle energetics during explosive activities and potential effects of nutrition and training.

Sahlin K.

Sports Med. 2014 Nov;44 Suppl 2:S167-73. doi: 10.1007/s40279-014-0256-9. Review.

13.

BESST--efficient scaffolding of large fragmented assemblies.

Sahlin K, Vezzi F, Nystedt B, Lundeberg J, Arvestad L.

BMC Bioinformatics. 2014 Aug 15;15:281. doi: 10.1186/1471-2105-15-281.

14.

Mitochondrial plasticity with exercise training and extreme environments.

Boushel R, Lundby C, Qvortrup K, Sahlin K.

Exerc Sport Sci Rev. 2014 Oct;42(4):169-74. doi: 10.1249/JES.0000000000000025. Review.

PMID:
25062000
15.

Muscle glycogen content modifies SR Ca2+ release rate in elite endurance athletes.

Gejl KD, Hvid LG, Frandsen U, Jensen K, Sahlin K, Ørtenblad N.

Med Sci Sports Exerc. 2014 Mar;46(3):496-505. doi: 10.1249/MSS.0000000000000132.

PMID:
24091991
16.

The Norway spruce genome sequence and conifer genome evolution.

Nystedt B, Street NR, Wetterbom A, Zuccolo A, Lin YC, Scofield DG, Vezzi F, Delhomme N, Giacomello S, Alexeyenko A, Vicedomini R, Sahlin K, Sherwood E, Elfstrand M, Gramzow L, Holmberg K, Hällman J, Keech O, Klasson L, Koriabine M, Kucukoglu M, Käller M, Luthman J, Lysholm F, Niittylä T, Olson A, Rilakovic N, Ritland C, Rosselló JA, Sena J, Svensson T, Talavera-López C, Theißen G, Tuominen H, Vanneste K, Wu ZQ, Zhang B, Zerbe P, Arvestad L, Bhalerao R, Bohlmann J, Bousquet J, Garcia Gil R, Hvidsten TR, de Jong P, MacKay J, Morgante M, Ritland K, Sundberg B, Thompson SL, Van de Peer Y, Andersson B, Nilsson O, Ingvarsson PK, Lundeberg J, Jansson S.

Nature. 2013 May 30;497(7451):579-84. doi: 10.1038/nature12211. Epub 2013 May 22.

PMID:
23698360
17.

Resistance exercise induced mTORC1 signaling is not impaired by subsequent endurance exercise in human skeletal muscle.

Apró W, Wang L, Pontén M, Blomstrand E, Sahlin K.

Am J Physiol Endocrinol Metab. 2013 Jul 1;305(1):E22-32. doi: 10.1152/ajpendo.00091.2013. Epub 2013 Apr 30.

18.

Acute exercise reverses starvation-mediated insulin resistance in humans.

Frank P, Katz A, Andersson E, Sahlin K.

Am J Physiol Endocrinol Metab. 2013 Feb 15;304(4):E436-43. doi: 10.1152/ajpendo.00416.2012. Epub 2012 Dec 26.

19.

Exercise with low glycogen increases PGC-1α gene expression in human skeletal muscle.

Psilander N, Frank P, Flockhart M, Sahlin K.

Eur J Appl Physiol. 2013 Apr;113(4):951-63. doi: 10.1007/s00421-012-2504-8. Epub 2012 Oct 2.

PMID:
23053125
20.

Improved gap size estimation for scaffolding algorithms.

Sahlin K, Street N, Lundeberg J, Arvestad L.

Bioinformatics. 2012 Sep 1;28(17):2215-22.

PMID:
22923455
21.

The effect of continuous and interval exercise on PGC-1α and PDK4 mRNA in type I and type II fibres of human skeletal muscle.

Wang L, Sahlin K.

Acta Physiol (Oxf). 2012 Apr;204(4):525-32. doi: 10.1111/j.1748-1716.2011.02354.x. Epub 2011 Sep 27.

PMID:
21883960
22.

Resistance exercise enhances the molecular signaling of mitochondrial biogenesis induced by endurance exercise in human skeletal muscle.

Wang L, Mascher H, Psilander N, Blomstrand E, Sahlin K.

J Appl Physiol (1985). 2011 Nov;111(5):1335-44. doi: 10.1152/japplphysiol.00086.2011. Epub 2011 Aug 11.

23.

Comments on Point:Counterpoint: Muscle lactate and H⁺ production do/do not have a 1:1 association in skeletal muscle. Why add complexity/confusion to a simple issue?

Sahlin K.

J Appl Physiol (1985). 2011 May;110(5):1494. doi: 10.1152/japplphysiol.00242.2011. No abstract available.

24.

Mitochondrial oxygen affinity predicts basal metabolic rate in humans.

Larsen FJ, Schiffer TA, Sahlin K, Ekblom B, Weitzberg E, Lundberg JO.

FASEB J. 2011 Aug;25(8):2843-52. doi: 10.1096/fj.11-182139. Epub 2011 May 16.

PMID:
21576503
25.

Boosting fat burning with carnitine: an old friend comes out from the shadow.

Sahlin K.

J Physiol. 2011 Apr 1;589(Pt 7):1509-10. doi: 10.1113/jphysiol.2011.205815. No abstract available.

26.

The creatine kinase reaction: a simple reaction with functional complexity.

Sahlin K, Harris RC.

Amino Acids. 2011 May;40(5):1363-7. doi: 10.1007/s00726-011-0856-8. Epub 2011 Mar 11. Review.

PMID:
21394603
27.

Dietary inorganic nitrate improves mitochondrial efficiency in humans.

Larsen FJ, Schiffer TA, Borniquel S, Sahlin K, Ekblom B, Lundberg JO, Weitzberg E.

Cell Metab. 2011 Feb 2;13(2):149-59. doi: 10.1016/j.cmet.2011.01.004.

28.

Mitochondrial gene expression in elite cyclists: effects of high-intensity interval exercise.

Psilander N, Wang L, Westergren J, Tonkonogi M, Sahlin K.

Eur J Appl Physiol. 2010 Oct;110(3):597-606. doi: 10.1007/s00421-010-1544-1. Epub 2010 Jun 23. Erratum in: Eur J Appl Physiol. 2010 Oct;110(3):607. Niklas, Psilander [corrected to Psilander, Niklas]; Li, Wang [corrected to Wang, Li]; Jens, Westergren [corrected to Westergren, Jens]; Michail, Tonkonogi [corrected to Tonkonogi, Michail]; Kent, Sahlin [corrected to Sahlin, Kent].

PMID:
20571821
29.

Effect of physical training on mitochondrial respiration and reactive oxygen species release in skeletal muscle in patients with obesity and type 2 diabetes.

Hey-Mogensen M, Højlund K, Vind BF, Wang L, Dela F, Beck-Nielsen H, Fernström M, Sahlin K.

Diabetologia. 2010 Sep;53(9):1976-85. doi: 10.1007/s00125-010-1813-x. Epub 2010 Jun 6.

PMID:
20526759
30.

Sodium bicarbonate ingestion prior to training improves mitochondrial adaptations in rats.

Bishop DJ, Thomas C, Moore-Morris T, Tonkonogi M, Sahlin K, Mercier J.

Am J Physiol Endocrinol Metab. 2010 Aug;299(2):E225-33. doi: 10.1152/ajpendo.00738.2009. Epub 2010 May 18.

31.

Ultraendurance exercise increases the production of reactive oxygen species in isolated mitochondria from human skeletal muscle.

Sahlin K, Shabalina IG, Mattsson CM, Bakkman L, Fernström M, Rozhdestvenskaya Z, Enqvist JK, Nedergaard J, Ekblom B, Tonkonogi M.

J Appl Physiol (1985). 2010 Apr;108(4):780-7. doi: 10.1152/japplphysiol.00966.2009. Epub 2010 Jan 28.

32.

Increased subsarcolemmal lipids in type 2 diabetes: effect of training on localization of lipids, mitochondria, and glycogen in sedentary human skeletal muscle.

Nielsen J, Mogensen M, Vind BF, Sahlin K, Højlund K, Schrøder HD, Ortenblad N.

Am J Physiol Endocrinol Metab. 2010 Mar;298(3):E706-13. doi: 10.1152/ajpendo.00692.2009. Epub 2009 Dec 22.

33.

FAT/CD36 is localized in sarcolemma and in vesicle-like structures in subsarcolemma regions but not in mitochondria.

Jeppesen J, Mogensen M, Prats C, Sahlin K, Madsen K, Kiens B.

J Lipid Res. 2010 Jun;51(6):1504-12. doi: 10.1194/jlr.M003756. Epub 2009 Dec 18.

34.

Similar expression of oxidative genes after interval and continuous exercise.

Wang L, Psilander N, Tonkonogi M, Ding S, Sahlin K.

Med Sci Sports Exerc. 2009 Dec;41(12):2136-44. doi: 10.1249/MSS.0b013e3181abc1ec.

PMID:
19915506
35.

Maximal lipid oxidation in patients with type 2 diabetes is normal and shows an adequate increase in response to aerobic training.

Mogensen M, Vind BF, Højlund K, Beck-Nielsen H, Sahlin K.

Diabetes Obes Metab. 2009 Sep;11(9):874-83. doi: 10.1111/j.1463-1326.2009.01063.x. Epub 2009 Jun 16.

PMID:
19531056
36.

Control of lipid oxidation at the mitochondrial level.

Sahlin K.

Appl Physiol Nutr Metab. 2009 Jun;34(3):382-8. doi: 10.1139/H09-027.

PMID:
19448703
37.

Turning down lipid oxidation during heavy exercise--what is the mechanism?

Sahlin K, Sallstedt EK, Bishop D, Tonkonogi M.

J Physiol Pharmacol. 2008 Dec;59 Suppl 7:19-30. Review.

PMID:
19258655
38.

Glycolysis in contracting rat skeletal muscle is controlled by factors related to energy state.

Ortenblad N, Macdonald WA, Sahlin K.

Biochem J. 2009 May 13;420(2):161-8. doi: 10.1042/BJ20082135.

PMID:
19250062
39.

Four weeks of speed endurance training reduces energy expenditure during exercise and maintains muscle oxidative capacity despite a reduction in training volume.

Iaia FM, Hellsten Y, Nielsen JJ, Fernström M, Sahlin K, Bangsbo J.

J Appl Physiol (1985). 2009 Jan;106(1):73-80. doi: 10.1152/japplphysiol.90676.2008. Epub 2008 Oct 9.

40.

Mitochondrial dysfunction in type 2 diabetes and obesity.

Højlund K, Mogensen M, Sahlin K, Beck-Nielsen H.

Endocrinol Metab Clin North Am. 2008 Sep;37(3):713-31, x. doi: 10.1016/j.ecl.2008.06.006. Review.

PMID:
18775360
41.

Response to point:counterpoint on "lactic acid".

Sahlin K.

J Appl Physiol (1985). 2008 Jul;105(1):366. doi: 10.1152/japplphysiol.zdg-8016-pcpcomm.2008. No abstract available.

42.

Control of lipid oxidation during exercise: role of energy state and mitochondrial factors.

Sahlin K, Harris RC.

Acta Physiol (Oxf). 2008 Dec;194(4):283-91. doi: 10.1111/j.1748-1716.2008.01879.x. Epub 2008 Jul 9. Review.

PMID:
18557841
43.

Reduced sarcoplasmic reticulum content of releasable Ca2+ in rat soleus muscle fibres after eccentric contractions.

Nielsen JS, Sahlin K, Ørtenblad N.

Acta Physiol (Oxf). 2007 Nov;191(3):217-28. Epub 2007 Jul 17.

PMID:
17635412
44.

Evaluation of cognitive behavioural training and physical activity for patients with stress-related illnesses: a randomized controlled study.

Heiden M, Lyskov E, Nakata M, Sahlin K, Sahlin T, Barnekow-Bergkvist M.

J Rehabil Med. 2007 May;39(5):366-73.

45.

Quantitative and qualitative adaptation of human skeletal muscle mitochondria to hypoxic compared with normoxic training at the same relative work rate.

Bakkman L, Sahlin K, Holmberg HC, Tonkonogi M.

Acta Physiol (Oxf). 2007 Jul;190(3):243-51. Epub 2007 May 22.

PMID:
17521315
46.

Mitochondrial respiration is decreased in skeletal muscle of patients with type 2 diabetes.

Mogensen M, Sahlin K, Fernström M, Glintborg D, Vind BF, Beck-Nielsen H, Højlund K.

Diabetes. 2007 Jun;56(6):1592-9. Epub 2007 Mar 9.

47.

Reduced efficiency, but increased fat oxidation, in mitochondria from human skeletal muscle after 24-h ultraendurance exercise.

Fernström M, Bakkman L, Tonkonogi M, Shabalina IG, Rozhdestvenskaya Z, Mattsson CM, Enqvist JK, Ekblom B, Sahlin K.

J Appl Physiol (1985). 2007 May;102(5):1844-9. Epub 2007 Jan 18.

48.

Effects of dietary nitrate on blood pressure in healthy volunteers.

Larsen FJ, Ekblom B, Sahlin K, Lundberg JO, Weitzberg E.

N Engl J Med. 2006 Dec 28;355(26):2792-3. No abstract available.

PMID:
17192551
49.

Maximal fat oxidation rates in endurance trained and untrained women.

Stisen AB, Stougaard O, Langfort J, Helge JW, Sahlin K, Madsen K.

Eur J Appl Physiol. 2006 Nov;98(5):497-506. Epub 2006 Sep 28.

PMID:
17006714
50.

The potential for mitochondrial fat oxidation in human skeletal muscle influences whole body fat oxidation during low-intensity exercise.

Sahlin K, Mogensen M, Bagger M, Fernström M, Pedersen PK.

Am J Physiol Endocrinol Metab. 2007 Jan;292(1):E223-30. Epub 2006 Aug 22.

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