PubMed

Huber KT, Moulton V, Sagot MF, Sinaimeri B.

Syst Biol. 2018 Nov 10. doi: 10.1093/sysbio/syy075. [Epub ahead of print]

Kyrkou I, Pusa T, Ellegaard-Jensen L, Sagot MF, Hansen LH.

Front Microbiol. 2018 Sep 12;9:2141. doi: 10.3389/fmicb.2018.02141. eCollection 2018. Review.

Ramos PIP, Fernández Do Porto D, Lanzarotti E, Sosa EJ, Burguener G, Pardo AM, Klein CC, Sagot MF, de Vasconcelos ATR, Gales AC, Marti M, Turjanski AG, Nicolás MF.

Sci Rep. 2018 Jul 17;8(1):10755. doi: 10.1038/s41598-018-28916-7.

Urbini L, Sinaimeri B, Matias C, Sagot MF.

IEEE/ACM Trans Comput Biol Bioinform. 2018 May 21. doi: 10.1109/TCBB.2018.2838667. [Epub ahead of print]

Di Genova A, Ruz GA, Sagot MF, Maass A.

Gigascience. 2018 May 1;7(5). doi: 10.1093/gigascience/giy048.

Galvao Ferrarini M, Mucha SG, Parrot D, Meiffrein G, Ruggiero Bachega JF, Comte G, Zaha A, Sagot MF.

Mol Microbiol. 2018 Jun;108(6):683-696. doi: 10.1111/mmi.13957. Epub 2018 Apr 26.

Hartmann A, Vila-Santa A, Kallscheuer N, Vogt M, Julien-Laferrière A, Sagot MF, Marienhagen J, Vinga S.

BMC Syst Biol. 2017 Dec 21;11(1):143. doi: 10.1186/s12918-017-0515-0.

Lima L, Sinaimeri B, Sacomoto G, Lopez-Maestre H, Marchet C, Miele V, Sagot MF, Lacroix V.

Algorithms Mol Biol. 2017 Feb 22;12:2. doi: 10.1186/s13015-017-0091-2. eCollection 2017.

Bailly-Bechet M, Martins-Simões P, Szöllosi GJ, Mialdea G, Sagot MF, Charlat S.

Mol Biol Evol. 2017 May 1;34(5):1183-1193. doi: 10.1093/molbev/msx073.

Veríssimo A, Oliveira AL, Sagot MF, Vinga S.

BMC Bioinformatics. 2016 Dec 13;17(Suppl 16):449. doi: 10.1186/s12859-016-1310-4.

Siqueira FM, de Morais GL, Higashi S, Beier LS, Breyer GM, de Sá Godinho CP, Sagot MF, Schrank IS, Zaha A, de Vasconcelos AT.

BMC Genomics. 2016 Oct 25;17(Suppl 8):743.

Lopez-Maestre H, Brinza L, Marchet C, Kielbassa J, Bastien S, Boutigny M, Monnin D, Filali AE, Carareto CM, Vieira C, Picard F, Kremer N, Vavre F, Sagot MF, Lacroix V.

Nucleic Acids Res. 2016 Nov 2;44(19):e148. Epub 2016 Jul 25.

Andrade R, Wannagat M, Klein CC, Acuña V, Marchetti-Spaccamela A, Milreu PV, Stougie L, Sagot MF.

Algorithms Mol Biol. 2016 Sep 19;11:25. doi: 10.1186/s13015-016-0087-3. eCollection 2016.

Sagot M, Phillips CD, Baker RJ, Stevens RD.

Ecol Evol. 2016 Jul 29;6(17):6050-63. doi: 10.1002/ece3.2255. eCollection 2016 Sep.

Julien-Laferrière A, Bulteau L, Parrot D, Marchetti-Spaccamela A, Stougie L, Vinga S, Mary A, Sagot MF.

Sci Rep. 2016 Jul 4;6:29182. doi: 10.1038/srep29182.

Ferrarini MG, Siqueira FM, Mucha SG, Palama TL, Jobard É, Elena-Herrmann B, R Vasconcelos AT, Tardy F, Schrank IS, Zaha A, Sagot MF.

BMC Genomics. 2016 May 13;17:353. doi: 10.1186/s12864-016-2644-z.

Sacomoto G, Lacroix V, Sagot MF.

Algorithms Mol Biol. 2015 Jun 27;10:20. doi: 10.1186/s13015-015-0046-4. eCollection 2015.

Sagot M, Chaverri G.

Conserv Biol. 2015 Dec;29(6):1666-73. doi: 10.1111/cobi.12546. Epub 2015 Jun 16.

Higashi S, Fournier C, Gautier C, Gaspin C, Sagot MF.

BMC Bioinformatics. 2015 May 29;16:179. doi: 10.1186/s12859-015-0594-0.

Rao Q, Rollat-Farnier PA, Zhu DT, Santos-Garcia D, Silva FJ, Moya A, Latorre A, Klein CC, Vavre F, Sagot MF, Liu SS, Mouton L, Wang XW.

BMC Genomics. 2015 Mar 21;16:226. doi: 10.1186/s12864-015-1379-6.

Bosi E, Donati B, Galardini M, Brunetti S, Sagot MF, Lió P, Crescenzi P, Fani R, Fondi M.

Bioinformatics. 2015 Aug 1;31(15):2443-51. doi: 10.1093/bioinformatics/btv171. Epub 2015 Mar 25.

Rollat-Farnier PA, Santos-Garcia D, Rao Q, Sagot MF, Silva FJ, Henri H, Zchori-Fein E, Latorre A, Moya A, Barbe V, Liu SS, Wang XW, Vavre F, Mouton L.

Genome Biol Evol. 2015 Feb 20;7(3):839-55. doi: 10.1093/gbe/evv030.

Donati B, Baudet C, Sinaimeri B, Crescenzi P, Sagot MF.

Algorithms Mol Biol. 2015 Jan 23;10(1):3. doi: 10.1186/s13015-014-0031-3. eCollection 2015.

Baudet C, Donati B, Sinaimeri B, Crescenzi P, Gautier C, Matias C, Sagot MF.

Syst Biol. 2015 May;64(3):416-31. doi: 10.1093/sysbio/syu129. Epub 2014 Dec 24.

Azevedo-Martins AC, Machado AC, Klein CC, Ciapina L, Gonzaga L, Vasconcelos AT, Sagot MF, DE Souza W, Einicker-Lamas M, Galina A, Motta MC.

Parasitology. 2015 Feb;142(2):352-62. doi: 10.1017/S0031182014001139. Epub 2014 Aug 27.

Klein CC, Alves JM, Serrano MG, Buck GA, Vasconcelos AT, Sagot MF, Teixeira MM, Camargo EP, Motta MC.

PLoS One. 2013 Nov 19;8(11):e79786. doi: 10.1371/journal.pone.0079786. eCollection 2013.

Milreu PV, Klein CC, Cottret L, Acuña V, Birmelé E, Borassi M, Junot C, Marchetti-Spaccamela A, Marino A, Stougie L, Jourdan F, Crescenzi P, Lacroix V, Sagot MF.

Bioinformatics. 2014 Jan 1;30(1):61-70. doi: 10.1093/bioinformatics/btt597. Epub 2013 Oct 27.

Alves JM, Klein CC, da Silva FM, Costa-Martins AG, Serrano MG, Buck GA, Vasconcelos AT, Sagot MF, Teixeira MM, Motta MC, Camargo EP.

BMC Evol Biol. 2013 Sep 9;13:190. doi: 10.1186/1471-2148-13-190.

Nor I, Engelstädter J, Duron O, Reuter M, Sagot MF, Charlat S.

Am Nat. 2013 Jul;182(1):E15-24. doi: 10.1086/670612.

Brilli M, Liò P, Lacroix V, Sagot MF.

BMC Genomics. 2013 May 8;14:309. doi: 10.1186/1471-2164-14-309.

Gillam EH, Chaverri G, Montero K, Sagot M.

PLoS One. 2013 Apr 24;8(4):e61731. doi: 10.1371/journal.pone.0061731. Print 2013.

Motta MC, Martins AC, de Souza SS, Catta-Preta CM, Silva R, Klein CC, de Almeida LG, de Lima Cunha O, Ciapina LP, Brocchi M, Colabardini AC, de Araujo Lima B, Machado CR, de Almeida Soares CM, Probst CM, de Menezes CB, Thompson CE, Bartholomeu DC, Gradia DF, Pavoni DP, Grisard EC, Fantinatti-Garboggini F, Marchini FK, Rodrigues-Luiz GF, Wagner G, Goldman GH, Fietto JL, Elias MC, Goldman MH, Sagot MF, Pereira M, Stoco PH, de Mendonça-Neto RP, Teixeira SM, Maciel TE, de Oliveira Mendes TA, Ürményi TP, de Souza W, Schenkman S, de Vasconcelos AT.

PLoS One. 2013;8(4):e60209. doi: 10.1371/journal.pone.0060209. Epub 2013 Apr 3.

Mendes ND, Heyne S, Freitas AT, Sagot MF, Backofen R.

Bioinformatics. 2012 Dec 1;28(23):3034-41. doi: 10.1093/bioinformatics/bts574. Epub 2012 Oct 10.

Klein CC, Cottret L, Kielbassa J, Charles H, Gautier C, Ribeiro de Vasconcelos AT, Lacroix V, Sagot MF.

BMC Genomics. 2012 Aug 31;13:438. doi: 10.1186/1471-2164-13-438.

Klein C, Marino A, Sagot MF, Vieira Milreu P, Brilli M.

Brief Funct Genomics. 2012 Nov;11(6):420-33. doi: 10.1093/bfgp/els030. Epub 2012 Aug 20.

Acuña V, Milreu PV, Cottret L, Marchetti-Spaccamela A, Stougie L, Sagot MF.

Bioinformatics. 2012 Oct 1;28(19):2474-83. Epub 2012 Jul 10.

Baudet C, Dias Z, Sagot MF.

Algorithms Mol Biol. 2012 Jun 15;7(1):18. doi: 10.1186/1748-7188-7-18.

Allali J, Saule C, Chauve C, d'Aubenton-Carafa Y, Denise A, Drevet C, Ferraro P, Gautheret D, Herrbach C, Leclerc F, de Monte A, Ouangraoua A, Sagot MF, Termier M, Thermes C, Touzet H.

Adv Bioinformatics. 2012;2012:893048. doi: 10.1155/2012/893048. Epub 2012 May 23.

Sacomoto GA, Kielbassa J, Chikhi R, Uricaru R, Antoniou P, Sagot MF, Peterlongo P, Lacroix V.

BMC Bioinformatics. 2012 Apr 19;13 Suppl 6:S5. doi: 10.1186/1471-2105-13-S6-S5.

Véron AS, Lemaitre C, Gautier C, Lacroix V, Sagot MF.

BMC Genomics. 2011 Jun 10;12:303. doi: 10.1186/1471-2164-12-303.

Deniélou YP, Sagot MF, Boyer F, Viari A.

BMC Bioinformatics. 2011 May 24;12:193. doi: 10.1186/1471-2105-12-193.

Simões PM, Mialdea G, Reiss D, Sagot MF, Charlat S.

Mol Ecol Resour. 2011 May;11(3):567-72. doi: 10.1111/j.1755-0998.2010.02955.x. Epub 2011 Jan 18.

Vellozo AF, Véron AS, Baa-Puyoulet P, Huerta-Cepas J, Cottret L, Febvay G, Calevro F, Rahbé Y, Douglas AE, Gabaldón T, Sagot MF, Charles H, Colella S.

Database (Oxford). 2011 Apr 7;2011:bar008. doi: 10.1093/database/bar008. Print 2011.

Mendes ND, Freitas AT, Vasconcelos AT, Sagot MF.

BMC Genomics. 2010 Sep 29;11:529. doi: 10.1186/1471-2164-11-529.

Cottret L, Milreu PV, Acuña V, Marchetti-Spaccamela A, Stougie L, Charles H, Sagot MF.

PLoS Comput Biol. 2010 Sep 2;6(9). pii: e1000904. doi: 10.1371/journal.pcbi.1000904.

Baudet C, Lemaitre C, Dias Z, Gautier C, Tannier E, Sagot MF.

Bioinformatics. 2010 Aug 1;26(15):1897-8. doi: 10.1093/bioinformatics/btq301. Epub 2010 Jun 23.

Cottret L, Wildridge D, Vinson F, Barrett MP, Charles H, Sagot MF, Jourdan F.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W132-7. doi: 10.1093/nar/gkq312. Epub 2010 May 5.

Braga MD, Gautier C, Sagot MF.

Algorithms Mol Biol. 2009 Dec 30;4:16. doi: 10.1186/1748-7188-4-16.

Acuña V, Marchetti-Spaccamela A, Sagot MF, Stougie L.

Biosystems. 2010 Mar;99(3):210-4. doi: 10.1016/j.biosystems.2009.11.004. Epub 2009 Dec 3.

Brinza L, Viñuelas J, Cottret L, Calevro F, Rahbé Y, Febvay G, Duport G, Colella S, Rabatel A, Gautier C, Fayard JM, Sagot MF, Charles H.

C R Biol. 2009 Nov;332(11):1034-49. doi: 10.1016/j.crvi.2009.09.007. Epub 2009 Oct 14. Review.