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The Cytoscape Automation app article collection.

Demchak B, Otasek D, Pico AR, Bader GD, Ono K, Settle B, Sage E, Morris JH, Longabaugh W, Lopes C, Kucera M, Treister A, Schwikowski B, Molenaar P, Ideker T.

F1000Res. 2018 Jun 20;7:800. doi: 10.12688/f1000research.15355.1. eCollection 2018.


The feasibility of extubation in the operating room after bilateral lung transplantation in adult emphysema patients: an observational retrospective study.

Assenzo V, Assenzo C, Filippo R, Le Guen M, Sage E, Roux A, Fischler M, Liu N; Foch Lung Transplant Group.

Eur J Cardiothorac Surg. 2018 May 23. doi: 10.1093/ejcts/ezy196. [Epub ahead of print]


Peribronchial tertiary lymphoid structures persist after rituximab therapy in patients with cystic fibrosis.

Regard L, Martin C, Zemoura L, Geolier V, Sage E, Burgel PR.

J Clin Pathol. 2018 Aug;71(8):752-753. doi: 10.1136/jclinpath-2018-205160. Epub 2018 Apr 27. No abstract available.


Donor-specific HLA antibody-mediated complement activation is a significant indicator of antibody-mediated rejection and poor long-term graft outcome during lung transplantation: a single center cohort study.

Roux A, Thomas KA, Sage E, Suberbielle-Boissel C, Beaumont-Azuar L, Parquin F, Le Guen M, Harre N, Hamid AM, Reed EF.

Transpl Int. 2018 Jul;31(7):761-772. doi: 10.1111/tri.13149. Epub 2018 Apr 22.


Using deep learning to model the hierarchical structure and function of a cell.

Ma J, Yu MK, Fong S, Ono K, Sage E, Demchak B, Sharan R, Ideker T.

Nat Methods. 2018 Apr;15(4):290-298. doi: 10.1038/nmeth.4627. Epub 2018 Mar 5.


Loss of functional BAP1 augments sensitivity to TRAIL in cancer cells.

Kolluri KK, Alifrangis C, Kumar N, Ishii Y, Price S, Michaut M, Williams S, Barthorpe S, Lightfoot H, Busacca S, Sharkey A, Yuan Z, Sage EK, Vallath S, Le Quesne J, Tice DA, Alrifai D, von Karstedt S, Montinaro A, Guppy N, Waller DA, Nakas A, Good R, Holmes A, Walczak H, Fennell DA, Garnett M, Iorio F, Wessels L, McDermott U, Janes SM.

Elife. 2018 Jan 18;7. pii: e30224. doi: 10.7554/eLife.30224.


FAM13A is a modifier gene of cystic fibrosis lung phenotype regulating rhoa activity, actin cytoskeleton dynamics and epithelial-mesenchymal transition.

Corvol H, Rousselet N, Thompson KE, Berdah L, Cottin G, Foussigniere T, Longchampt E, Fiette L, Sage E, Prunier C, Drumm M, Hodges CA, Boëlle PY, Guillot L.

J Cyst Fibros. 2018 Mar;17(2):190-203. doi: 10.1016/j.jcf.2017.11.003. Epub 2017 Nov 26.


Exhaustive preoperative staging increases survival in resected adrenal oligometastatic non-small-cell lung cancer: a multicentre study.

De Wolf J, Bellier J, Lepimpec-Barthes F, Tronc F, Peillon C, Bernard A, Le Rochais JP, Tiffet O, Sage E, Chapelier A, Porte H.

Eur J Cardiothorac Surg. 2017 Oct 1;52(4):698-703. doi: 10.1093/ejcts/ezx193.


Characteristics of Donor-Specific Antibodies Associated With Antibody-Mediated Rejection in Lung Transplantation.

Roux A, Bendib Le Lan I, Holifanjaniaina S, Thomas KA, Picard C, Grenet D, De Miranda S, Douvry B, Beaumont-Azuar L, Sage E, Devaquet J, Cuquemelle E, Le Guen M, Suberbielle C, Gautreau C, Stern M, Rossetti M, Hamid AM, Parquin F.

Front Med (Lausanne). 2017 Oct 11;4:155. doi: 10.3389/fmed.2017.00155. eCollection 2017.


Prevention of ischemia-reperfusion lung injury during static cold preservation by supplementation of standard preservation solution with HEMO2life® in pig lung transplantation model.

Glorion M, Polard V, Favereau F, Hauet T, Zal F, Fadel E, Sage E.

Artif Cells Nanomed Biotechnol. 2017 Oct 25:1-8. doi: 10.1080/21691401.2017.1392315. [Epub ahead of print]


Network propagation in the cytoscape cyberinfrastructure.

Carlin DE, Demchak B, Pratt D, Sage E, Ideker T.

PLoS Comput Biol. 2017 Oct 12;13(10):e1005598. doi: 10.1371/journal.pcbi.1005598. eCollection 2017 Oct.


Lung cancer in renal transplant recipients: A case-control study.

Rousseau-Gazaniol C, Fraboulet S, Couderc LJ, Kreis H, Borie R, Tricot L, Anglicheau D, Martinez F, Doubre H, Bonnette P, Mellot F, Massiani MA, Pelle G, Sage E, Moisson P, Delahousse M, Zemoura L, Chapelier A, Hamid AM, Puyo P, Longchampt E, Legendre C, Friard S, Catherinot E.

Lung Cancer. 2017 Sep;111:96-100. doi: 10.1016/j.lungcan.2017.07.011. Epub 2017 Jul 11.


Development of a Multivariate Prediction Model for Early-Onset Bronchiolitis Obliterans Syndrome and Restrictive Allograft Syndrome in Lung Transplantation.

Koutsokera A, Royer PJ, Antonietti JP, Fritz A, Benden C, Aubert JD, Tissot A, Botturi K, Roux A, Reynaud-Gaubert ML, Kessler R, Dromer C, Mussot S, Mal H, Mornex JF, Guillemain R, Knoop C, Dahan M, Soccal PM, Claustre J, Sage E, Gomez C, Magnan A, Pison C, Nicod LP; SysCLAD Consortium.

Front Med (Lausanne). 2017 Jul 17;4:109. doi: 10.3389/fmed.2017.00109. eCollection 2017.


Thoracic Epidural Analgesia With Levobupivacaine Reduces Remifentanil and Propofol Consumption Evaluated by Closed-Loop Titration Guided by the Bispectral Index: A Double-Blind Placebo-Controlled Study.

Dumans-Nizard V, Le Guen M, Sage E, Chazot T, Fischler M, Liu N.

Anesth Analg. 2017 Aug;125(2):635-642. doi: 10.1213/ANE.0000000000001996.


In smokers, Sonic hedgehog modulates pulmonary endothelial function through vascular endothelial growth factor.

Henno P, Grassin-Delyle S, Belle E, Brollo M, Naline E, Sage E, Devillier P, Israël-Biet D.

Respir Res. 2017 May 23;18(1):102. doi: 10.1186/s12931-017-0590-1.


Real-Time Computed Tomography Highlights Pulmonary Parenchymal Evolution During Ex Vivo Lung Reconditioning.

Sage E, De Wolf J, Puyo P, Bonnette P, Glorion M, Salley N, Roux A, Liu N, Chapelier A.

Ann Thorac Surg. 2017 Jun;103(6):e535-e537. doi: 10.1016/j.athoracsur.2016.12.029.


Effects of definitive and salvage radiotherapy on the distribution of lymphocyte subpopulations in prostate cancer patients.

Sage EK, Schmid TE, Geinitz H, Gehrmann M, Sedelmayr M, Duma MN, Combs SE, Multhoff G.

Strahlenther Onkol. 2017 Aug;193(8):648-655. doi: 10.1007/s00066-017-1144-7. Epub 2017 May 12.


UVB represses melanocyte cell migration and acts through β-catenin.

Bertrand JU, Petit V, Hacker E, Berlin I, Hayward NK, Pouteaux M, Sage E, Whiteman DC, Larue L.

Exp Dermatol. 2017 Oct;26(10):875-882. doi: 10.1111/exd.13318. Epub 2017 May 3.


Chronic effects of air pollution on lung function after lung transplantation in the Systems prediction of Chronic Lung Allograft Dysfunction (SysCLAD) study.

Benmerad M, Slama R, Botturi K, Claustre J, Roux A, Sage E, Reynaud-Gaubert M, Gomez C, Kessler R, Brugière O, Mornex JF, Mussot S, Dahan M, Boussaud V, Danner-Boucher I, Dromer C, Knoop C, Auffray A, Lepeule J, Malherbe L, Meleux F, Nicod L, Magnan A, Pison C, Siroux V; SysCLAD consortium.

Eur Respir J. 2017 Jan 18;49(1). pii: 1600206. doi: 10.1183/13993003.00206-2016. Print 2017 Jan.


Radiation-induced clustered DNA lesions: Repair and mutagenesis.

Sage E, Shikazono N.

Free Radic Biol Med. 2017 Jun;107:125-135. doi: 10.1016/j.freeradbiomed.2016.12.008. Epub 2016 Dec 8. Review.


Using Single Free Sorting and Multivariate Exploratory Methods to Design a New Coffee Taster's Flavor Wheel.

Spencer M, Sage E, Velez M, Guinard JX.

J Food Sci. 2016 Dec;81(12):S2997-S3005. doi: 10.1111/1750-3841.13555. Epub 2016 Nov 11.


Genetically modified mesenchymal stromal cells in cancer therapy.

Sage EK, Thakrar RM, Janes SM.

Cytotherapy. 2016 Nov;18(11):1435-1445. doi: 10.1016/j.jcyt.2016.09.003. Review.


Logistic ex Vivo Lung Perfusion for Hyperimmunized Patients.

De Wolf J, Puyo P, Bonnette P, Roux A, Le Guen M, Parquin F, Chapelier A, Sage E.

Ann Thorac Surg. 2016 Sep;102(3):e205-e206. doi: 10.1016/j.athoracsur.2016.01.081.


Radical Carinal Resection for a Glomic Tumor.

Bellier J, Sage E, Gonin F, Longchampt E, Chapelier A.

Ann Thorac Surg. 2016 Aug;102(2):e143-5. doi: 10.1016/j.athoracsur.2016.01.023.


[What place for lung volume reduction surgery for emphysema?]

De Wolf J, Bonnette P, Sage É, Hamid A.

Rev Mal Respir. 2017 Feb;34(2):147-154. doi: 10.1016/j.rmr.2016.05.004. Epub 2016 Jul 18. Review. French.


Cryopreservation of human mesenchymal stromal cells expressing TRAIL for human anti-cancer therapy.

Yuan Z, Lourenco Sda S, Sage EK, Kolluri KK, Lowdell MW, Janes SM.

Cytotherapy. 2016 Jul;18(7):860-9. doi: 10.1016/j.jcyt.2016.04.005.


Combined cell-gene therapy for lung cancer: rationale, challenges and prospects.

Thakrar RM, Sage EK, Janes SM.

Expert Opin Biol Ther. 2016 Jul;16(7):853-7. doi: 10.1080/14712598.2016.1188074. Epub 2016 Jun 3. No abstract available.


Immediate postoperative extubation in bilateral lung transplantation: predictive factors and outcomes.

Felten ML, Moyer JD, Dreyfus JF, Marandon JY, Sage E, Roux A, Parquin F, Cerf C, Zuber B, Le Guen M, Fischler M; Foch Lung Transplant Group.

Br J Anaesth. 2016 Jun;116(6):847-54. doi: 10.1093/bja/aew119.


CADM1 inhibits squamous cell carcinoma progression by reducing STAT3 activity.

Vallath S, Sage EK, Kolluri KK, Lourenco SN, Teixeira VS, Chimalapati S, George PJ, Janes SM, Giangreco A.

Sci Rep. 2016 Apr 1;6:24006. doi: 10.1038/srep24006.


Frequency fluctuations in silicon nanoresonators.

Sansa M, Sage E, Bullard EC, Gély M, Alava T, Colinet E, Naik AK, Villanueva LG, Duraffourg L, Roukes ML, Jourdan G, Hentz S.

Nat Nanotechnol. 2016 Jun;11(6):552-8. doi: 10.1038/nnano.2016.19. Epub 2016 Feb 29.


Antibody-Mediated Rejection in Lung Transplantation: Clinical Outcomes and Donor-Specific Antibody Characteristics.

Roux A, Bendib Le Lan I, Holifanjaniaina S, Thomas KA, Hamid AM, Picard C, Grenet D, De Miranda S, Douvry B, Beaumont-Azuar L, Sage E, Devaquet J, Cuquemelle E, Le Guen M, Spreafico R, Suberbielle-Boissel C, Stern M, Parquin F; Foch Lung Transplantation Group.

Am J Transplant. 2016 Apr;16(4):1216-28. doi: 10.1111/ajt.13589. Epub 2016 Feb 4.


Dewar valence isomers, the third type of environmentally relevant DNA photoproducts induced by solar radiation.

Douki T, Sage E.

Photochem Photobiol Sci. 2016 Jan;15(1):24-30. doi: 10.1039/c5pp00382b. Epub 2015 Dec 21. Review.


Comparative analysis of the effects of radiotherapy versus radiotherapy after adjuvant chemotherapy on the composition of lymphocyte subpopulations in breast cancer patients.

Sage EK, Schmid TE, Sedelmayr M, Gehrmann M, Geinitz H, Duma MN, Combs SE, Multhoff G.

Radiother Oncol. 2016 Jan;118(1):176-80. doi: 10.1016/j.radonc.2015.11.016. Epub 2015 Dec 9.


Shine on you crazy books: the Comprehensive Series in Photochemical & Photobiological Sciences.

Trotta M, Rhodes LE, Sage E.

Photochem Photobiol Sci. 2016 Jan;15(1):8-9. doi: 10.1039/c5pp90043c. Epub 2015 Dec 14. No abstract available.


Supporting 'Baby Friendly': a quality improvement initiative for the management of transitional neonatal hypoglycaemia.

Stewart CE, Sage EL, Reynolds P.

Arch Dis Child Fetal Neonatal Ed. 2016 Jul;101(4):F344-7. doi: 10.1136/archdischild-2015-308950. Epub 2015 Dec 7.


Membrane-anchored Serine Protease Matriptase Is a Trigger of Pulmonary Fibrogenesis.

Bardou O, Menou A, François C, Duitman JW, von der Thüsen JH, Borie R, Sales KU, Mutze K, Castier Y, Sage E, Liu L, Bugge TH, Fairlie DP, Königshoff M, Crestani B, Borensztajn KS.

Am J Respir Crit Care Med. 2016 Apr 15;193(8):847-60. doi: 10.1164/rccm.201502-0299OC.


Singlet Oxygen-Mediated Oxidation during UVA Radiation Alters the Dynamic of Genomic DNA Replication.

Graindorge D, Martineau S, Machon C, Arnoux P, Guitton J, Francesconi S, Frochot C, Sage E, Girard PM.

PLoS One. 2015 Oct 20;10(10):e0140645. doi: 10.1371/journal.pone.0140645. eCollection 2015.


Circulating microRNAs as prognostic therapy biomarkers in head and neck cancer patients.

Summerer I, Unger K, Braselmann H, Schuettrumpf L, Maihoefer C, Baumeister P, Kirchner T, Niyazi M, Sage E, Specht HM, Multhoff G, Moertl S, Belka C, Zitzelsberger H.

Br J Cancer. 2015 Jun 30;113(1):76-82. doi: 10.1038/bjc.2015.111. Epub 2015 Jun 9.


Sialyl Lewis x (CD15s) identifies highly differentiated and most suppressive FOXP3high regulatory T cells in humans.

Miyara M, Chader D, Sage E, Sugiyama D, Nishikawa H, Bouvry D, Claër L, Hingorani R, Balderas R, Rohrer J, Warner N, Chapelier A, Valeyre D, Kannagi R, Sakaguchi S, Amoura Z, Gorochov G.

Proc Natl Acad Sci U S A. 2015 Jun 9;112(23):7225-30. doi: 10.1073/pnas.1508224112. Epub 2015 May 26.


High Emergency Lung Transplantation: dramatic decrease of waiting list death rate without relevant higher post-transplant mortality.

Roux A, Beaumont-Azuar L, Hamid AM, De Miranda S, Grenet D, Briend G, Bonnette P, Puyo P, Parquin F, Devaquet J, Trebbia G, Cuquemelle E, Douvry B, Picard C, Le Guen M, Chapelier A, Stern M, Sage E; FOCH Lung Transplant Group.

Transpl Int. 2015 Sep;28(9):1092-101. doi: 10.1111/tri.12604. Epub 2015 May 27.


Mesenchymal stromal cell delivery of full-length tumor necrosis factor-related apoptosis-inducing ligand is superior to soluble type for cancer therapy.

Yuan Z, Kolluri KK, Sage EK, Gowers KH, Janes SM.

Cytotherapy. 2015 Jul;17(7):885-96. doi: 10.1016/j.jcyt.2015.03.603. Epub 2015 Apr 14.


Feasibility and results of a fast-track protocol in thoracic surgery.

Dumans-Nizard V, Guezennec J, Parquin F, Puyo P, Sage E, Abdat R, Vaillant V, Chapelier A, Dreyfus JF, Fischler M, LE Guen M; Foch Thoracic Anesthesiology Group.

Minerva Anestesiol. 2016 Jan;82(1):15-21. Epub 2015 Mar 13.


Neutral particle mass spectrometry with nanomechanical systems.

Sage E, Brenac A, Alava T, Morel R, Dupré C, Hanay MS, Roukes ML, Duraffourg L, Masselon C, Hentz S.

Nat Commun. 2015 Mar 10;6:6482. doi: 10.1038/ncomms7482.


[The management of lung transplantation candidates. A case series].

Picard C, Boisseau M, De Miranda S, Hamid A, Grenet D, Parquin F, Sage E, Stern M, Roux A.

Rev Mal Respir. 2015 Jan;32(1):1-7. doi: 10.1016/j.rmr.2014.02.007. Epub 2014 Mar 18. French.


Antitumor effects of TRAIL-expressing mesenchymal stromal cells in a mouse xenograft model of human mesothelioma.

Lathrop MJ, Sage EK, Macura SL, Brooks EM, Cruz F, Bonenfant NR, Sokocevic D, MacPherson MB, Beuschel SL, Dunaway CW, Shukla A, Janes SM, Steele C, Mossman BT, Weiss DJ.

Cancer Gene Ther. 2015 Jan;22(1):44-54. doi: 10.1038/cgt.2014.68. Epub 2014 Dec 19.


Revisiting the matricellular concept.

Murphy-Ullrich JE, Sage EH.

Matrix Biol. 2014 Jul;37:1-14. doi: 10.1016/j.matbio.2014.07.005. Epub 2014 Jul 24. Review.


Lung transplantation from initially rejected donors after ex vivo lung reconditioning: the French experience.

Sage E, Mussot S, Trebbia G, Puyo P, Stern M, Dartevelle P, Chapelier A, Fischler M; Foch Lung Transplant Group.

Eur J Cardiothorac Surg. 2014 Nov;46(5):794-9. doi: 10.1093/ejcts/ezu245. Epub 2014 Jul 24.


High-emergency waiting list for lung transplantation: early results of a nation-based study.

Orsini B, Sage E, Olland A, Cochet E, Tabutin M, Thumerel M, Charot F, Chapelier A, Massard G, Brichon PY, Tronc F, Jougon J, Dahan M, D'Journo XB, Reynaud-Gaubert M, Trousse D, Doddoli C, Thomas PA.

Eur J Cardiothorac Surg. 2014 Sep;46(3):e41-7; discussion e47. doi: 10.1093/ejcts/ezu259. Epub 2014 Jul 3.


Hsp70--a biomarker for tumor detection and monitoring of outcome of radiation therapy in patients with squamous cell carcinoma of the head and neck.

Gehrmann M, Specht HM, Bayer C, Brandstetter M, Chizzali B, Duma M, Breuninger S, Hube K, Lehnerer S, van Phi V, Sage E, Schmid TE, Sedelmayr M, Schilling D, Sievert W, Stangl S, Multhoff G.

Radiat Oncol. 2014 Jun 9;9:131. doi: 10.1186/1748-717X-9-131.


Fission yeast Rad52 phosphorylation restrains error prone recombination pathways.

Bellini A, Girard PM, Tessier L, Sage E, Francesconi S.

PLoS One. 2014 Apr 18;9(4):e95788. doi: 10.1371/journal.pone.0095788. eCollection 2014.

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