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Items: 6

1.

Reconstructing Antibody Repertoires from Error-Prone Immunosequencing Reads.

Shlemov A, Bankevich S, Bzikadze A, Turchaninova MA, Safonova Y, Pevzner PA.

J Immunol. 2017 Nov 1;199(9):3369-3380. doi: 10.4049/jimmunol.1700485. Epub 2017 Oct 4.

2.

Extraordinary Genetic Diversity in a Wood Decay Mushroom.

Baranova MA, Logacheva MD, Penin AA, Seplyarskiy VB, Safonova YY, Naumenko SA, Klepikova AV, Gerasimov ES, Bazykin GA, James TY, Kondrashov AS.

Mol Biol Evol. 2015 Oct;32(10):2775-83. doi: 10.1093/molbev/msv153. Epub 2015 Jul 10.

3.

IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis.

Safonova Y, Bonissone S, Kurpilyansky E, Starostina E, Lapidus A, Stinson J, DePalatis L, Sandoval W, Lill J, Pevzner PA.

Bioinformatics. 2015 Jun 15;31(12):i53-61. doi: 10.1093/bioinformatics/btv238.

4.

IgSimulator: a versatile immunosequencing simulator.

Safonova Y, Lapidus A, Lill J.

Bioinformatics. 2015 Oct 1;31(19):3213-5. doi: 10.1093/bioinformatics/btv326. Epub 2015 May 25.

PMID:
26007226
5.

dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.

Safonova Y, Bankevich A, Pevzner PA.

J Comput Biol. 2015 Jun;22(6):528-45. doi: 10.1089/cmb.2014.0153. Epub 2015 Mar 3.

6.

Hydroperoxides of alpha-ketols. Novel products of the plant lipoxygenase pathway.

Grechkin AN, Kuramshin RA, Latypov SK, Safonova YYu, Gafarova TE, Ilyasov AV.

Eur J Biochem. 1991 Jul 15;199(2):451-7.

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