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Items: 8


Essential guidelines for computational method benchmarking.

Weber LM, Saelens W, Cannoodt R, Soneson C, Hapfelmeier A, Gardner PP, Boulesteix AL, Saeys Y, Robinson MD.

Genome Biol. 2019 Jun 20;20(1):125. doi: 10.1186/s13059-019-1738-8. Review.


A comparison of single-cell trajectory inference methods.

Saelens W, Cannoodt R, Todorov H, Saeys Y.

Nat Biotechnol. 2019 May;37(5):547-554. doi: 10.1038/s41587-019-0071-9. Epub 2019 Apr 1.


Network Inference from Single-Cell Transcriptomic Data.

Todorov H, Cannoodt R, Saelens W, Saeys Y.

Methods Mol Biol. 2019;1883:235-249. doi: 10.1007/978-1-4939-8882-2_10.


The Transcription Factor ZEB2 Is Required to Maintain the Tissue-Specific Identities of Macrophages.

Scott CL, T'Jonck W, Martens L, Todorov H, Sichien D, Soen B, Bonnardel J, De Prijck S, Vandamme N, Cannoodt R, Saelens W, Vanneste B, Toussaint W, De Bleser P, Takahashi N, Vandenabeele P, Henri S, Pridans C, Hume DA, Lambrecht BN, De Baetselier P, Milling SWF, Van Ginderachter JA, Malissen B, Berx G, Beschin A, Saeys Y, Guilliams M.

Immunity. 2018 Aug 21;49(2):312-325.e5. doi: 10.1016/j.immuni.2018.07.004. Epub 2018 Jul 31.


A comprehensive evaluation of module detection methods for gene expression data.

Saelens W, Cannoodt R, Saeys Y.

Nat Commun. 2018 Mar 15;9(1):1090. doi: 10.1038/s41467-018-03424-4.


Computational methods for trajectory inference from single-cell transcriptomics.

Cannoodt R, Saelens W, Saeys Y.

Eur J Immunol. 2016 Nov;46(11):2496-2506. doi: 10.1002/eji.201646347. Epub 2016 Oct 19. Review.


The transcription factor Zeb2 regulates development of conventional and plasmacytoid DCs by repressing Id2.

Scott CL, Soen B, Martens L, Skrypek N, Saelens W, Taminau J, Blancke G, Van Isterdael G, Huylebroeck D, Haigh J, Saeys Y, Guilliams M, Lambrecht BN, Berx G.

J Exp Med. 2016 May 30;213(6):897-911. doi: 10.1084/jem.20151715. Epub 2016 May 16.


Yolk Sac Macrophages, Fetal Liver, and Adult Monocytes Can Colonize an Empty Niche and Develop into Functional Tissue-Resident Macrophages.

van de Laar L, Saelens W, De Prijck S, Martens L, Scott CL, Van Isterdael G, Hoffmann E, Beyaert R, Saeys Y, Lambrecht BN, Guilliams M.

Immunity. 2016 Apr 19;44(4):755-68. doi: 10.1016/j.immuni.2016.02.017. Epub 2016 Mar 15.

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