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Items: 44


Gut Microbiota-Derived Tryptophan Metabolites Modulate Inflammatory Response in Hepatocytes and Macrophages.

Krishnan S, Ding Y, Saeidi N, Choi M, Sridharan GV, Sherr DH, Yarmush ML, Alaniz RC, Jayaraman A, Lee K.

Cell Rep. 2019 Sep 17;28(12):3285. doi: 10.1016/j.celrep.2019.08.080. No abstract available.


Reflexology as an adjunctive nursing intervention for management of nausea in hemodialysis patients: A randomized clinical trial.

Naseri-Salahshour V, Sajadi M, Abedi A, Fournier A, Saeidi N.

Complement Ther Clin Pract. 2019 Aug;36:29-33. doi: 10.1016/j.ctcp.2019.04.006. Epub 2019 May 3.


Emerging contaminants in wastewater, stormwater runoff, and surface water: Application as chemical markers for diffuse sources.

Tran NH, Reinhard M, Khan E, Chen H, Nguyen VT, Li Y, Goh SG, Nguyen QB, Saeidi N, Gin KY.

Sci Total Environ. 2019 Aug 1;676:252-267. doi: 10.1016/j.scitotenv.2019.04.160. Epub 2019 Apr 14.


Occurrence of microbial indicators, pathogenic bacteria and viruses in tropical surface waters subject to contrasting land use.

Goh SG, Saeidi N, Gu X, Vergara GGR, Liang L, Fang H, Kitajima M, Kushmaro A, Gin KY.

Water Res. 2019 Mar 1;150:200-215. doi: 10.1016/j.watres.2018.11.058. Epub 2018 Nov 26.


Rejuvenation of aged rat skin with pulsed electric fields.

Li X, Saeidi N, Villiger M, Albadawi H, Jones JD, Quinn KP, Austin WG Jr, Golberg A, Yarmush ML.

J Tissue Eng Regen Med. 2018 Dec;12(12):2309-2318. doi: 10.1002/term.2763. Epub 2018 Nov 22.


Cryptosporidium and Giardia in Wastewater and Surface Water Environments.

Hamilton KA, Waso M, Reyneke B, Saeidi N, Levine A, Lalancette C, Besner MC, Khan W, Ahmed W.

J Environ Qual. 2018 Sep;47(5):1006-1023. doi: 10.2134/jeq2018.04.0132. Review.


Methanol as a hydrate inhibitor and hydrate activator.

Kvamme B, Selvåg J, Saeidi N, Kuznetsova T.

Phys Chem Chem Phys. 2018 Aug 29;20(34):21968-21987. doi: 10.1039/c8cp02447b.


Corrigendum to "Precipitation influences pathogenic bacteria and antibiotic resistance genes abundance in storm drain outfalls in coastal sub-tropical waters" [Environ. Int. 116 (2018) 308-318].

Ahmed W, Zhang Q, Lobos A, Senkbeil J, Sadowsky MJ, Harwood VJ, Saeidi N, Marinoni O, Ishii S.

Environ Int. 2018 Oct;119:239. doi: 10.1016/j.envint.2018.06.031. Epub 2018 Jul 4. No abstract available.


Multi-omic network-based interrogation of rat liver metabolism following gastric bypass surgery featuring SWATH proteomics.

Sridharan GV, D'Alessandro M, Bale SS, Bhagat V, Gagnon H, Asara JM, Uygun K, Yarmush ML, Saeidi N.

Technology (Singap World Sci). 2017 Sep;5(3):139-184. doi: 10.1142/S233954781750008X. Epub 2017 Sep 26.


Occurrence of Traditional and Alternative Fecal Indicators in Tropical Urban Environments under Different Land Use Patterns.

Saeidi N, Gu X, Tran NH, Goh SG, Kitajima M, Kushmaro A, Schmitz BW, Gin KY.

Appl Environ Microbiol. 2018 Jul 2;84(14). pii: e00287-18. doi: 10.1128/AEM.00287-18. Print 2018 Jul 15.


Precipitation influences pathogenic bacteria and antibiotic resistance gene abundance in storm drain outfalls in coastal sub-tropical waters.

Ahmed W, Zhang Q, Lobos A, Senkbeil J, Sadowsky MJ, Harwood VJ, Saeidi N, Marinoni O, Ishii S.

Environ Int. 2018 Jul;116:308-318. doi: 10.1016/j.envint.2018.04.005. Epub 2018 May 10. Erratum in: Environ Int. 2018 Oct;119:239.


Geospatial distribution of viromes in tropical freshwater ecosystems.

Gu X, Tay QXM, Te SH, Saeidi N, Goh SG, Kushmaro A, Thompson JR, Gin KY.

Water Res. 2018 Jun 15;137:220-232. doi: 10.1016/j.watres.2018.03.017. Epub 2018 Mar 8.


Nonalcoholic fatty liver disease and gastric bypass surgery regulate serum and hepatic levels of pyruvate kinase isoenzyme M2.

Meoli L, Gupta NK, Saeidi N, Panciotti CA, Biddinger SB, Corey KE, Stylopoulos N.

Am J Physiol Endocrinol Metab. 2018 Oct 1;315(4):E613-E621. doi: 10.1152/ajpendo.00296.2017. Epub 2018 Feb 20.


Metabolomic Modularity Analysis (MMA) to Quantify Human Liver Perfusion Dynamics.

Sridharan GV, Bruinsma BG, Bale SS, Swaminathan A, Saeidi N, Yarmush ML, Uygun K.

Metabolites. 2017 Nov 13;7(4). pii: E58. doi: 10.3390/metabo7040058.


Occurrence of Vibrio species, beta-lactam resistant Vibrio species, and indicator bacteria in ballast and port waters of a tropical harbor.

Ng C, Goh SG, Saeidi N, Gerhard WA, Gunsch CK, Gin KYH.

Sci Total Environ. 2018 Jan 1;610-611:651-656. doi: 10.1016/j.scitotenv.2017.08.099. Epub 2017 Aug 17.


Development of a chemiluminescent DNA fibre optic genosensor to Hepatitis A Virus (HAV).

Ye K, Manzano M, Muzzi R, Gin KY, Saeidi N, Goh SG, Tok AIY, Marks RS.

Talanta. 2017 Nov 1;174:401-408. doi: 10.1016/j.talanta.2017.06.036. Epub 2017 Jun 13.


Regulation of Energy Homeostasis After Gastric Bypass Surgery.

Yarmush ML, D'Alessandro M, Saeidi N.

Annu Rev Biomed Eng. 2017 Jun 21;19:459-484. doi: 10.1146/annurev-bioeng-071813-105140. Review.


Human Corneal Fibroblast Pattern Evolution and Matrix Synthesis on Mechanically Biased Substrates.

Zareian R, Susilo ME, Paten JA, McLean JP, Hollmann J, Karamichos D, Messer CS, Tambe DT, Saeidi N, Zieske JD, Ruberti JW.

Tissue Eng Part A. 2016 Oct;22(19-20):1204-1217. Epub 2016 Sep 29.


DNMT3B -149 C>T and -579 G>T Polymorphisms and Risk of Gastric and Colorectal Cancer: a Meta-analysis.

Khoram-Abadi KM, Forat-Yazdi M, Kheirandish S, Saeidi N, Zarezade Z, Mehrabi N, Neamatzadeh H.

Asian Pac J Cancer Prev. 2016;17(6):3015-20.


Metabolic profiling during ex vivo machine perfusion of the human liver.

Bruinsma BG, Sridharan GV, Weeder PD, Avruch JH, Saeidi N, Özer S, Geerts S, Porte RJ, Heger M, van Gulik TM, Martins PN, Markmann JF, Yeh H, Uygun K.

Sci Rep. 2016 Mar 3;6:22415. doi: 10.1038/srep22415.


Tuning of chalcogen bonds by cation-π interactions: cooperative and diminutive effects.

Esrafili MD, Saeidi N, Solimannejad M.

J Mol Model. 2015 Nov;21(11):300. doi: 10.1007/s00894-015-2850-7. Epub 2015 Nov 3.


An update to DNA ladder assay for apoptosis detection.

Rahbar Saadat Y, Saeidi N, Zununi Vahed S, Barzegari A, Barar J.

Bioimpacts. 2015;5(1):25-8. doi: 10.15171/bi.2015.01. Epub 2015 Feb 21.


Surgical models of Roux-en-Y gastric bypass surgery and sleeve gastrectomy in rats and mice.

Bruinsma BG, Uygun K, Yarmush ML, Saeidi N.

Nat Protoc. 2015 Mar;10(3):495-507. doi: 10.1038/nprot.2015.027. Epub 2015 Feb 26.


Lymph node fibroblastic reticular cell transplants show robust therapeutic efficacy in high-mortality murine sepsis.

Fletcher AL, Elman JS, Astarita J, Murray R, Saeidi N, D'Rozario J, Knoblich K, Brown FD, Schildberg FA, Nieves JM, Heng TS, Boyd RL, Turley SJ, Parekkadan B.

Sci Transl Med. 2014 Aug 13;6(249):249ra109. doi: 10.1126/scitranslmed.3009377.


Supercooling enables long-term transplantation survival following 4 days of liver preservation.

Berendsen TA, Bruinsma BG, Puts CF, Saeidi N, Usta OB, Uygun BE, Izamis ML, Toner M, Yarmush ML, Uygun K.

Nat Med. 2014 Jul;20(7):790-3. doi: 10.1038/nm.3588. Epub 2014 Jun 29.


Subnormothermic machine perfusion for ex vivo preservation and recovery of the human liver for transplantation.

Bruinsma BG, Yeh H, Ozer S, Martins PN, Farmer A, Wu W, Saeidi N, Op den Dries S, Berendsen TA, Smith RN, Markmann JF, Porte RJ, Yarmush ML, Uygun K, Izamis ML.

Am J Transplant. 2014 Jun;14(6):1400-9. doi: 10.1111/ajt.12727. Epub 2014 Apr 23.


Reprogramming of intestinal glucose metabolism and glycemic control in rats after gastric bypass.

Saeidi N, Meoli L, Nestoridi E, Gupta NK, Kvas S, Kucharczyk J, Bonab AA, Fischman AJ, Yarmush ML, Stylopoulos N.

Science. 2013 Jul 26;341(6144):406-10. doi: 10.1126/science.1235103.



Izamis ML, Calhoun C, Uygun BE, Guzzardi MA, Price G, Luitje M, Saeidi N, Yarmush ML, Uygun K.

Cell Med. 2013;4(3):109-123.


Sleeve gastrectomy and Roux-en-Y gastric bypass exhibit differential effects on food preferences, nutrient absorption and energy expenditure in obese rats.

Saeidi N, Nestoridi E, Kucharczyk J, Uygun MK, Yarmush ML, Stylopoulos N.

Int J Obes (Lond). 2012 Nov;36(11):1396-402. doi: 10.1038/ijo.2012.167. Epub 2012 Oct 9.


Molecular crowding of collagen: a pathway to produce highly-organized collagenous structures.

Saeidi N, Karmelek KP, Paten JA, Zareian R, DiMasi E, Ruberti JW.

Biomaterials. 2012 Oct;33(30):7366-74. doi: 10.1016/j.biomaterials.2012.06.041. Epub 2012 Jul 29.


Disorganized collagen scaffold interferes with fibroblast mediated deposition of organized extracellular matrix in vitro.

Saeidi N, Guo X, Hutcheon AE, Sander EA, Bale SS, Melotti SA, Zieske JD, Trinkaus-Randall V, Ruberti JW.

Biotechnol Bioeng. 2012 Oct;109(10):2683-98. doi: 10.1002/bit.24533. Epub 2012 May 4.


Realization of an active book for multichannel intrathecal root stimulation in spinal cord injury--preliminary results.

Schuettler M, Vanhoestenberghe A, Saeidi N, Liu X, Evans J, Colinge C, Demosthenous A, Donaldson N.

Conf Proc IEEE Eng Med Biol Soc. 2011;2011:2965-8. doi: 10.1109/IEMBS.2011.6090814.


Engineering microbes to sense and eradicate Pseudomonas aeruginosa, a human pathogen.

Saeidi N, Wong CK, Lo TM, Nguyen HX, Ling H, Leong SS, Poh CL, Chang MW.

Mol Syst Biol. 2011 Aug 16;7:521. doi: 10.1038/msb.2011.55.


Design and performance of an optically accessible, low-volume, mechanobioreactor for long-term study of living constructs.

Paten JA, Zareian R, Saeidi N, Melotti SA, Ruberti JW.

Tissue Eng Part C Methods. 2011 Jul;17(7):775-88. doi: 10.1089/ten.TEC.2010.0642. Epub 2011 Apr 21.


In situ metabolic flux analysis to quantify the liver metabolic response to experimental burn injury.

Izamis ML, Sharma NS, Uygun B, Bieganski R, Saeidi N, Nahmias Y, Uygun K, Yarmush ML, Berthiaume F.

Biotechnol Bioeng. 2011 Apr;108(4):839-52. doi: 10.1002/bit.22998. Epub 2010 Dec 4.


Production of highly aligned collagen lamellae by combining shear force and thin film confinement.

Saeidi N, Sander EA, Zareian R, Ruberti JW.

Acta Biomater. 2011 Jun;7(6):2437-47. doi: 10.1016/j.actbio.2011.02.038. Epub 2011 Mar 21.


Molecular mechanochemistry: low force switch slows enzymatic cleavage of human type I collagen monomer.

Camp RJ, Liles M, Beale J, Saeidi N, Flynn BP, Moore E, Murthy SK, Ruberti JW.

J Am Chem Soc. 2011 Mar 23;133(11):4073-8. doi: 10.1021/ja110098b. Epub 2011 Feb 24.


Mechanical strain stabilizes reconstituted collagen fibrils against enzymatic degradation by mammalian collagenase matrix metalloproteinase 8 (MMP-8).

Flynn BP, Bhole AP, Saeidi N, Liles M, Dimarzio CA, Ruberti JW.

PLoS One. 2010 Aug 23;5(8):e12337. doi: 10.1371/journal.pone.0012337.


A predicted S-type pyocin shows a bactericidal activity against clinical Pseudomonas aeruginosa isolates through membrane damage.

Ling H, Saeidi N, Rasouliha BH, Chang MW.

FEBS Lett. 2010 Aug 4;584(15):3354-8. doi: 10.1016/j.febslet.2010.06.021. Epub 2010 Jun 18.


Probing collagen/enzyme mechanochemistry in native tissue with dynamic, enzyme-induced creep.

Zareian R, Church KP, Saeidi N, Flynn BP, Beale JW, Ruberti JW.

Langmuir. 2010 Jun 15;26(12):9917-26. doi: 10.1021/la100384e.


Dynamic shear-influenced collagen self-assembly.

Saeidi N, Sander EA, Ruberti JW.

Biomaterials. 2009 Dec;30(34):6581-92. doi: 10.1016/j.biomaterials.2009.07.070. Epub 2009 Sep 17.


Mechanical strain enhances survivability of collagen micronetworks in the presence of collagenase: implications for load-bearing matrix growth and stability.

Bhole AP, Flynn BP, Liles M, Saeidi N, Dimarzio CA, Ruberti JW.

Philos Trans A Math Phys Eng Sci. 2009 Sep 13;367(1902):3339-62. doi: 10.1098/rsta.2009.0093.


Effect of serum and insulin modulation on the organization and morphology of matrix synthesized by bovine corneal stromal cells.

Bueno EM, Saeidi N, Melotti S, Ruberti JW.

Tissue Eng Part A. 2009 Nov;15(11):3559-73. doi: 10.1089/ten.TEA.2008.0404.


Human primary corneal fibroblasts synthesize and deposit proteoglycans in long-term 3-D cultures.

Ren R, Hutcheon AE, Guo XQ, Saeidi N, Melotti SA, Ruberti JW, Zieske JD, Trinkaus-Randall V.

Dev Dyn. 2008 Oct;237(10):2705-15. doi: 10.1002/dvdy.21606.

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