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Items: 1 to 50 of 152

1.

Evaluation of sample preparation methods for label-free quantitative profiling of salivary proteome.

Zhang X, Sadowski P, Punyadeera C.

J Proteomics. 2020 Jan 6;210:103532. doi: 10.1016/j.jprot.2019.103532. Epub 2019 Oct 16.

PMID:
31629056
2.

Omalizumab may decrease the thickness of the reticular basement membrane and fibronectin deposit in the bronchial mucosa of severe allergic asthmatics.

Zastrzeżyńska W, Przybyszowski M, Bazan-Socha S, Gawlewicz-Mroczka A, Sadowski P, Okoń K, Jakieła B, Plutecka H, Ćmiel A, Sładek K, Musiał J, Soja J.

J Asthma. 2019 Mar 23:1-10. doi: 10.1080/02770903.2019.1585872. [Epub ahead of print]

PMID:
30905217
3.

Learning in the machine: Recirculation is random backpropagation.

Baldi P, Sadowski P.

Neural Netw. 2018 Dec;108:479-494. doi: 10.1016/j.neunet.2018.09.006. Epub 2018 Sep 27.

PMID:
30317133
4.

Learning in the Machine: Random Backpropagation and the Deep Learning Channel.

Baldi P, Sadowski P, Lu Z.

Artif Intell. 2018 Jul;260:1-35. doi: 10.1016/j.artint.2018.03.003. Epub 2018 Apr 3.

5.

Clinical veterinary proteomics: Techniques and approaches to decipher the animal plasma proteome.

Ghodasara P, Sadowski P, Satake N, Kopp S, Mills PC.

Vet J. 2017 Dec;230:6-12. doi: 10.1016/j.tvjl.2017.10.022. Epub 2017 Nov 11. Review.

PMID:
29208216
6.

Learning in the machine: The symmetries of the deep learning channel.

Baldi P, Sadowski P, Lu Z.

Neural Netw. 2017 Nov;95:110-133. doi: 10.1016/j.neunet.2017.08.008. Epub 2017 Sep 5.

PMID:
28938130
7.

Characterisation of the circulating acellular proteome of healthy sheep using LC-MS/MS-based proteomics analysis of serum.

Chemonges S, Gupta R, Mills PC, Kopp SR, Sadowski P.

Proteome Sci. 2017 Jun 10;15:11. doi: 10.1186/s12953-017-0119-z. eCollection 2016.

8.

Oral to subcutaneous methotrexate dose-conversion strategy in the treatment of rheumatoid arthritis.

Schiff MH, Sadowski P.

Rheumatol Int. 2017 Feb;37(2):213-218. doi: 10.1007/s00296-016-3621-1. Epub 2016 Dec 23.

PMID:
28012023
9.

SEIPIN Regulates Lipid Droplet Expansion and Adipocyte Development by Modulating the Activity of Glycerol-3-phosphate Acyltransferase.

Pagac M, Cooper DE, Qi Y, Lukmantara IE, Mak HY, Wu Z, Tian Y, Liu Z, Lei M, Du X, Ferguson C, Kotevski D, Sadowski P, Chen W, Boroda S, Harris TE, Liu G, Parton RG, Huang X, Coleman RA, Yang H.

Cell Rep. 2016 Nov 1;17(6):1546-1559. doi: 10.1016/j.celrep.2016.10.037.

10.

Synergies Between Quantum Mechanics and Machine Learning in Reaction Prediction.

Sadowski P, Fooshee D, Subrahmanya N, Baldi P.

J Chem Inf Model. 2016 Nov 28;56(11):2125-2128. Epub 2016 Oct 25.

PMID:
27749058
11.

A theory of local learning, the learning channel, and the optimality of backpropagation.

Baldi P, Sadowski P.

Neural Netw. 2016 Nov;83:51-74. doi: 10.1016/j.neunet.2016.07.006. Epub 2016 Aug 5.

PMID:
27584574
12.

Generalized Open Quantum Walks on Apollonian Networks.

Pawela Ł, Gawron P, Miszczak JA, Sadowski P.

PLoS One. 2015 Jul 15;10(7):e0130967. doi: 10.1371/journal.pone.0130967. eCollection 2015.

13.

Enhanced Higgs boson to τ(+)τ(-) search with deep learning.

Baldi P, Sadowski P, Whiteson D.

Phys Rev Lett. 2015 Mar 20;114(11):111801. Epub 2015 Mar 18.

PMID:
25839260
14.

Large-Scale Interlaboratory Study to Develop, Analytically Validate and Apply Highly Multiplexed, Quantitative Peptide Assays to Measure Cancer-Relevant Proteins in Plasma.

Abbatiello SE, Schilling B, Mani DR, Zimmerman LJ, Hall SC, MacLean B, Albertolle M, Allen S, Burgess M, Cusack MP, Gosh M, Hedrick V, Held JM, Inerowicz HD, Jackson A, Keshishian H, Kinsinger CR, Lyssand J, Makowski L, Mesri M, Rodriguez H, Rudnick P, Sadowski P, Sedransk N, Shaddox K, Skates SJ, Kuhn E, Smith D, Whiteaker JR, Whitwell C, Zhang S, Borchers CH, Fisher SJ, Gibson BW, Liebler DC, MacCoss MJ, Neubert TA, Paulovich AG, Regnier FE, Tempst P, Carr SA.

Mol Cell Proteomics. 2015 Sep;14(9):2357-74. doi: 10.1074/mcp.M114.047050. Epub 2015 Feb 18.

15.

Inter-species prediction of protein phosphorylation in the sbv IMPROVER species translation challenge.

Biehl M, Sadowski P, Bhanot G, Bilal E, Dayarian A, Meyer P, Norel R, Rhrissorrakrai K, Zeller MD, Hormoz S.

Bioinformatics. 2015 Feb 15;31(4):453-61. doi: 10.1093/bioinformatics/btu407. Epub 2014 Jul 3.

16.

Searching for exotic particles in high-energy physics with deep learning.

Baldi P, Sadowski P, Whiteson D.

Nat Commun. 2014 Jul 2;5:4308. doi: 10.1038/ncomms5308.

PMID:
24986233
17.

The Dropout Learning Algorithm.

Baldi P, Sadowski P.

Artif Intell. 2014 May;210:78-122.

18.

HNH proteins are a widespread component of phage DNA packaging machines.

Kala S, Cumby N, Sadowski PD, Hyder BZ, Kanelis V, Davidson AR, Maxwell KL.

Proc Natl Acad Sci U S A. 2014 Apr 22;111(16):6022-7. doi: 10.1073/pnas.1320952111. Epub 2014 Apr 7.

19.

Small-molecule 3D structure prediction using open crystallography data.

Sadowski P, Baldi P.

J Chem Inf Model. 2013 Dec 23;53(12):3127-30. doi: 10.1021/ci4005282. Epub 2013 Dec 10.

20.

Design, implementation and multisite evaluation of a system suitability protocol for the quantitative assessment of instrument performance in liquid chromatography-multiple reaction monitoring-MS (LC-MRM-MS).

Abbatiello SE, Mani DR, Schilling B, Maclean B, Zimmerman LJ, Feng X, Cusack MP, Sedransk N, Hall SC, Addona T, Allen S, Dodder NG, Ghosh M, Held JM, Hedrick V, Inerowicz HD, Jackson A, Keshishian H, Kim JW, Lyssand JS, Riley CP, Rudnick P, Sadowski P, Shaddox K, Smith D, Tomazela D, Wahlander A, Waldemarson S, Whitwell CA, You J, Zhang S, Kinsinger CR, Mesri M, Rodriguez H, Borchers CH, Buck C, Fisher SJ, Gibson BW, Liebler D, Maccoss M, Neubert TA, Paulovich A, Regnier F, Skates SJ, Tempst P, Wang M, Carr SA.

Mol Cell Proteomics. 2013 Sep;12(9):2623-39. doi: 10.1074/mcp.M112.027078. Epub 2013 May 20.

21.

The molecular basis for selective inhibition of unconventional mRNA splicing by an IRE1-binding small molecule.

Cross BC, Bond PJ, Sadowski PG, Jha BK, Zak J, Goodman JM, Silverman RH, Neubert TA, Baxendale IR, Ron D, Harding HP.

Proc Natl Acad Sci U S A. 2012 Apr 10;109(15):E869-78. doi: 10.1073/pnas.1115623109. Epub 2012 Feb 6.

22.

The CTCF insulator protein forms an unusual DNA structure.

MacPherson MJ, Sadowski PD.

BMC Mol Biol. 2010 Dec 21;11:101. doi: 10.1186/1471-2199-11-101.

23.

Improved sub-cellular resolution via simultaneous analysis of organelle proteomics data across varied experimental conditions.

Trotter MW, Sadowski PG, Dunkley TP, Groen AJ, Lilley KS.

Proteomics. 2010 Dec;10(23):4213-9. doi: 10.1002/pmic.201000359.

PMID:
21058340
24.

Metastable pores at the onset of constant-current electroporation.

Kotulska M, Basalyga J, Derylo MB, Sadowski P.

J Membr Biol. 2010 Jul;236(1):37-41. doi: 10.1007/s00232-010-9285-y. Epub 2010 Jul 23.

25.

Addressing accuracy and precision issues in iTRAQ quantitation.

Karp NA, Huber W, Sadowski PG, Charles PD, Hester SV, Lilley KS.

Mol Cell Proteomics. 2010 Sep;9(9):1885-97. doi: 10.1074/mcp.M900628-MCP200. Epub 2010 Apr 10.

26.

The crystal structure of bacteriophage HK97 gp6: defining a large family of head-tail connector proteins.

Cardarelli L, Lam R, Tuite A, Baker LA, Sadowski PD, Radford DR, Rubinstein JL, Battaile KP, Chirgadze N, Maxwell KL, Davidson AR.

J Mol Biol. 2010 Jan 29;395(4):754-68. doi: 10.1016/j.jmb.2009.10.067. Epub 2009 Nov 4.

PMID:
19895817
27.

The CTCF insulator protein is posttranslationally modified by SUMO.

MacPherson MJ, Beatty LG, Zhou W, Du M, Sadowski PD.

Mol Cell Biol. 2009 Feb;29(3):714-25. doi: 10.1128/MCB.00825-08. Epub 2008 Nov 24.

28.

Sub-cellular localization of membrane proteins.

Sadowski PG, Groen AJ, Dupree P, Lilley KS.

Proteomics. 2008 Oct;8(19):3991-4011. doi: 10.1002/pmic.200800217. Review.

PMID:
18780351
29.

Quantitative proteomic approach to study subcellular localization of membrane proteins.

Sadowski PG, Dunkley TP, Shadforth IP, Dupree P, Bessant C, Griffin JL, Lilley KS.

Nat Protoc. 2006;1(4):1778-89.

PMID:
17487160
30.

Differentiation of isomeric N-glycan structures by normal-phase liquid chromatography-MALDI-TOF/TOF tandem mass spectrometry.

Maslen S, Sadowski P, Adam A, Lilley K, Stephens E.

Anal Chem. 2006 Dec 15;78(24):8491-8.

PMID:
17165844
31.

Constitutional UPD for chromosome 11p15 in individuals with isolated hemihyperplasia is associated with high tumor risk and occurs following assisted reproductive technologies.

Shuman C, Smith AC, Steele L, Ray PN, Clericuzio C, Zackai E, Parisi MA, Meadows AT, Kelly T, Tichauer D, Squire JA, Sadowski P, Weksberg R.

Am J Med Genet A. 2006 Jul 15;140(14):1497-503.

PMID:
16770802
32.

Lox and Cre sandwich.

Lee L, Sadowski PD.

Nat Chem Biol. 2005 Oct;1(5):246-7. No abstract available.

PMID:
16408050
33.
34.

Strand selection by the tyrosine recombinases.

Lee L, Sadowski PD.

Prog Nucleic Acid Res Mol Biol. 2005;80:1-42. Review. No abstract available.

PMID:
16164971
35.

The KCNQ1OT1 promoter, a key regulator of genomic imprinting in human chromosome 11p15.5.

Du M, Zhou W, Beatty LG, Weksberg R, Sadowski PD.

Genomics. 2004 Aug;84(2):288-300.

PMID:
15233993
36.

CDKN1C mutation in Wiedemann-Beckwith syndrome patients reduces RNA splicing efficiency and identifies a splicing enhancer.

Lew JM, Fei YL, Aleck K, Blencowe BJ, Weksberg R, Sadowski PD.

Am J Med Genet A. 2004 Jun 15;127A(3):268-76.

PMID:
15150778
37.

Insulator and silencer sequences in the imprinted region of human chromosome 11p15.5.

Du M, Beatty LG, Zhou W, Lew J, Schoenherr C, Weksberg R, Sadowski PD.

Hum Mol Genet. 2003 Aug 1;12(15):1927-39.

PMID:
12874112
38.

The Flp double cross system a simple efficient procedure for cloning DNA fragments.

Sadowski PD.

BMC Biotechnol. 2003 Jul 18;3:9. Epub 2003 Jul 18.

39.

Identification of Cre residues involved in synapsis, isomerization, and catalysis.

Lee L, Sadowski PD.

J Biol Chem. 2003 Sep 19;278(38):36905-15. Epub 2003 Jul 8.

40.

Cre induces an asymmetric DNA bend in its target loxP site.

Lee L, Chu LC, Sadowski PD.

J Biol Chem. 2003 Jun 20;278(25):23118-29. Epub 2003 Apr 9.

41.

Beckwith-Wiedemann syndrome demonstrates a role for epigenetic control of normal development.

Weksberg R, Smith AC, Squire J, Sadowski P.

Hum Mol Genet. 2003 Apr 1;12 Spec No 1:R61-8. Review.

PMID:
12668598
42.

Sequence of the loxP site determines the order of strand exchange by the Cre recombinase.

Lee L, Sadowski PD.

J Mol Biol. 2003 Feb 14;326(2):397-412.

PMID:
12559909
43.

Renal abnormalities in beckwith-wiedemann syndrome are associated with 11p15.5 uniparental disomy.

Goldman M, Smith A, Shuman C, Caluseriu O, Wei C, Steele L, Ray P, Sadowski P, Squire J, Weksberg R, Rosenblum ND.

J Am Soc Nephrol. 2002 Aug;13(8):2077-84.

44.

Discordant KCNQ1OT1 imprinting in sets of monozygotic twins discordant for Beckwith-Wiedemann syndrome.

Weksberg R, Shuman C, Caluseriu O, Smith AC, Fei YL, Nishikawa J, Stockley TL, Best L, Chitayat D, Olney A, Ives E, Schneider A, Bestor TH, Li M, Sadowski P, Squire J.

Hum Mol Genet. 2002 May 15;11(11):1317-25.

PMID:
12019213
45.

Tumor development in the Beckwith-Wiedemann syndrome is associated with a variety of constitutional molecular 11p15 alterations including imprinting defects of KCNQ1OT1.

Weksberg R, Nishikawa J, Caluseriu O, Fei YL, Shuman C, Wei C, Steele L, Cameron J, Smith A, Ambus I, Li M, Ray PN, Sadowski P, Squire J.

Hum Mol Genet. 2001 Dec 15;10(26):2989-3000.

PMID:
11751681
46.

Directional resolution of synthetic holliday structures by the Cre recombinase.

Lee L, Sadowski PD.

J Biol Chem. 2001 Aug 17;276(33):31092-8. Epub 2001 Jun 13.

47.

Chimeras of the Flp and Cre recombinases: tests of the mode of cleavage by Flp and Cre.

Shaikh AC, Sadowski PD.

J Mol Biol. 2000 Sep 8;302(1):27-48.

PMID:
10964559
48.

Trans complementation of variant Cre proteins for defects in cleavage and synapsis.

Shaikh AC, Sadowski PD.

J Biol Chem. 2000 Sep 29;275(39):30186-95.

49.

DNA sequence determinant for FIp-induced DNA bending.

Luetke KH, Sadowski PD.

Mol Microbiol. 1998 Jul;29(1):199-208.

50.

Determinants of the position of a Flp-induced DNA bend.

Luetke KH, Sadowski PD.

Nucleic Acids Res. 1998 Mar 15;26(6):1401-7.

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