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Items: 32

1.

Coarse-grain simulations on NMR conformational ensembles highlight functional residues in proteins.

Sacquin-Mora S.

J R Soc Interface. 2019 Jul 26;16(156):20190075. doi: 10.1098/rsif.2019.0075. Epub 2019 Jul 10.

PMID:
31288649
2.

Conformational Stability Adaptation of a Double-Stranded RNA-Binding Domain to Transfer RNA Ligand.

Bou-Nader C, Pecqueur L, Barraud P, Fontecave M, Tisné C, Sacquin-Mora S, Hamdane D.

Biochemistry. 2019 May 21;58(20):2463-2473. doi: 10.1021/acs.biochem.9b00111. Epub 2019 May 10.

PMID:
31045345
3.

Mechanical variations in proteins with large-scale motions highlight the formation of structural locks.

Sacquin-Mora S.

J Struct Biol. 2018 Sep;203(3):195-204. doi: 10.1016/j.jsb.2018.05.006. Epub 2018 May 28.

PMID:
29852221
4.

Hidden partners: Using cross-docking calculations to predict binding sites for proteins with multiple interactions.

Lagarde N, Carbone A, Sacquin-Mora S.

Proteins. 2018 Jul;86(7):723-737. doi: 10.1002/prot.25506. Epub 2018 Apr 24.

PMID:
29664226
5.

Meet-U: Educating through research immersion.

Abdollahi N, Albani A, Anthony E, Baud A, Cardon M, Clerc R, Czernecki D, Conte R, David L, Delaune A, Djerroud S, Fourgoux P, Guiglielmoni N, Laurentie J, Lehmann N, Lochard C, Montagne R, Myrodia V, Opuu V, Parey E, Polit L, Privé S, Quignot C, Ruiz-Cuevas M, Sissoko M, Sompairac N, Vallerix A, Verrecchia V, Delarue M, Guérois R, Ponty Y, Sacquin-Mora S, Carbone A, Froidevaux C, Le Crom S, Lespinet O, Weigt M, Abboud S, Bernardes J, Bouvier G, Dequeker C, Ferré A, Fuchs P, Lelandais G, Poulain P, Richard H, Schweke H, Laine E, Lopes A.

PLoS Comput Biol. 2018 Mar 15;14(3):e1005992. doi: 10.1371/journal.pcbi.1005992. eCollection 2018 Mar.

6.

Determinants of neuroglobin plasticity highlighted by joint coarse-grained simulations and high pressure crystallography.

Colloc'h N, Sacquin-Mora S, Avella G, Dhaussy AC, Prangé T, Vallone B, Girard E.

Sci Rep. 2017 May 12;7(1):1858. doi: 10.1038/s41598-017-02097-1.

7.

Mobility and Core-Protein Binding Patterns of Disordered C-Terminal Tails in β-Tubulin Isotypes.

Laurin Y, Eyer J, Robert CH, Prevost C, Sacquin-Mora S.

Biochemistry. 2017 Mar 28;56(12):1746-1756. doi: 10.1021/acs.biochem.6b00988. Epub 2017 Mar 17.

PMID:
28290671
8.

Bridging Enzymatic Structure Function via Mechanics: A Coarse-Grain Approach.

Sacquin-Mora S.

Methods Enzymol. 2016;578:227-48. doi: 10.1016/bs.mie.2016.05.022. Epub 2016 Jun 9. Review.

PMID:
27497169
9.

Great interactions: How binding incorrect partners can teach us about protein recognition and function.

Vamparys L, Laurent B, Carbone A, Sacquin-Mora S.

Proteins. 2016 Oct;84(10):1408-21. doi: 10.1002/prot.25086. Epub 2016 Jun 24.

10.

Fold and flexibility: what can proteins' mechanical properties tell us about their folding nucleus?

Sacquin-Mora S.

J R Soc Interface. 2015 Nov 6;12(112). pii: 20150876. doi: 10.1098/rsif.2015.0876.

11.

Docking Peptides on Proteins: How to Open a Lock, in the Dark, with a Flexible Key.

Sacquin-Mora S, Prévost C.

Structure. 2015 Aug 4;23(8):1373-1374. doi: 10.1016/j.str.2015.07.004.

12.

Investigating the Structural Variability and Binding Modes of the Glioma Targeting NFL-TBS.40-63 Peptide on Tubulin.

Laurin Y, Savarin P, Robert CH, Takahashi M, Eyer J, Prevost C, Sacquin-Mora S.

Biochemistry. 2015 Jun 16;54(23):3660-9. doi: 10.1021/acs.biochem.5b00146. Epub 2015 Jun 4.

PMID:
26016807
13.

Multiscale simulations give insight into the hydrogen in and out pathways of [NiFe]-hydrogenases from Aquifex aeolicus and Desulfovibrio fructosovorans.

Oteri F, Baaden M, Lojou E, Sacquin-Mora S.

J Phys Chem B. 2014 Dec 4;118(48):13800-11. doi: 10.1021/jp5089965. Epub 2014 Nov 21.

PMID:
25399809
14.

The weak, fluctuating, dipole moment of membrane-bound hydrogenase from Aquifex aeolicus accounts for its adaptability to charged electrodes.

Oteri F, Ciaccafava A, de Poulpiquet A, Baaden M, Lojou E, Sacquin-Mora S.

Phys Chem Chem Phys. 2014 Jun 21;16(23):11318-22. doi: 10.1039/c4cp00510d.

PMID:
24789038
15.

Protein-protein interactions in a crowded environment: an analysis via cross-docking simulations and evolutionary information.

Lopes A, Sacquin-Mora S, Dimitrova V, Laine E, Ponty Y, Carbone A.

PLoS Comput Biol. 2013;9(12):e1003369. doi: 10.1371/journal.pcbi.1003369. Epub 2013 Dec 5.

16.

Assessing the effect of dynamics on the closed-loop protein-folding hypothesis.

Chintapalli SV, Illingworth CJ, Upton GJ, Sacquin-Mora S, Reeves PJ, Mohammedali HS, Reynolds CA.

J R Soc Interface. 2013 Nov 20;11(91):20130935. doi: 10.1098/rsif.2013.0935. Print 2014 Feb 6.

17.

Heme orientation modulates histidine dissociation and ligand binding kinetics in the hexacoordinated human neuroglobin.

Bocahut A, Derrien V, Bernad S, Sebban P, Sacquin-Mora S, Guittet E, Lescop E.

J Biol Inorg Chem. 2013 Jan;18(1):111-22. doi: 10.1007/s00775-012-0956-2. Epub 2012 Nov 8.

18.

Thermal fluctuations of haemoglobin from different species: adaptation to temperature via conformational dynamics.

Stadler AM, Garvey CJ, Bocahut A, Sacquin-Mora S, Digel I, Schneider GJ, Natali F, Artmann GM, Zaccai G.

J R Soc Interface. 2012 Nov 7;9(76):2845-55. Epub 2012 Jun 13.

19.

Enzyme closure and nucleotide binding structurally lock guanylate kinase.

Delalande O, Sacquin-Mora S, Baaden M.

Biophys J. 2011 Sep 21;101(6):1440-9. doi: 10.1016/j.bpj.2011.07.048. Epub 2011 Sep 20.

20.

Frontier residues lining globin internal cavities present specific mechanical properties.

Bocahut A, Bernad S, Sebban P, Sacquin-Mora S.

J Am Chem Soc. 2011 Jun 8;133(22):8753-61. doi: 10.1021/ja202587a. Epub 2011 May 17.

PMID:
21553890
21.

Functional modes and residue flexibility control the anisotropic response of guanylate kinase to mechanical stress.

Sacquin-Mora S, Delalande O, Baaden M.

Biophys J. 2010 Nov 17;99(10):3412-9. doi: 10.1016/j.bpj.2010.09.026.

22.

Relating the diffusion of small ligands in human neuroglobin to its structural and mechanical properties.

Bocahut A, Bernad S, Sebban P, Sacquin-Mora S.

J Phys Chem B. 2009 Dec 17;113(50):16257-67. doi: 10.1021/jp906854x.

PMID:
19919085
23.

Charge recombination kinetics and protein dynamics in wild type and carotenoid-less bacterial reaction centers: studies in trehalose glasses.

Francia F, Malferrari M, Sacquin-Mora S, Venturoli G.

J Phys Chem B. 2009 Jul 30;113(30):10389-98. doi: 10.1021/jp902287y.

PMID:
19585969
24.

Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling.

Engelen S, Trojan LA, Sacquin-Mora S, Lavery R, Carbone A.

PLoS Comput Biol. 2009 Jan;5(1):e1000267. doi: 10.1371/journal.pcbi.1000267. Epub 2009 Jan 23.

25.

Modeling the mechanical response of proteins to anisotropic deformation.

Sacquin-Mora S, Lavery R.

Chemphyschem. 2009 Jan 12;10(1):115-8. doi: 10.1002/cphc.200800480. No abstract available.

PMID:
19006155
26.

Identification of protein interaction partners and protein-protein interaction sites.

Sacquin-Mora S, Carbone A, Lavery R.

J Mol Biol. 2008 Oct 24;382(5):1276-89. doi: 10.1016/j.jmb.2008.08.002. Epub 2008 Aug 7.

PMID:
18708070
27.

Probing the flexibility of the bacterial reaction center: the wild-type protein is more rigid than two site-specific mutants.

Sacquin-Mora S, Sebban P, Derrien V, Frick B, Lavery R, Alba-Simionesco C.

Biochemistry. 2007 Dec 25;46(51):14960-8. Epub 2007 Dec 4.

PMID:
18052234
28.

Protein mechanics: a route from structure to function.

Lavery R, Sacquin-Mora S.

J Biosci. 2007 Aug;32(5):891-8. Review.

29.

Locating the active sites of enzymes using mechanical properties.

Sacquin-Mora S, Laforet E, Lavery R.

Proteins. 2007 May 1;67(2):350-9.

PMID:
17311346
30.

Investigating the local flexibility of functional residues in hemoproteins.

Sacquin-Mora S, Lavery R.

Biophys J. 2006 Apr 15;90(8):2706-17. Epub 2006 Jan 20.

31.

Torsion-induced phase transitions in fluids confined between chemically decorated substrates.

Sacquin-Mora S, Fuchs AH, Schoen M.

J Chem Phys. 2004 Nov 8;121(18):9077-86.

PMID:
15527374
32.

Nanoscopic liquid bridges exposed to a torsional strain.

Sacquin-Mora S, Fuchs AH, Schoen M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Dec;68(6 Pt 2):066103. Epub 2003 Dec 15.

PMID:
14754265

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