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Items: 31

1.

Gene Expression Profiles Associated with Brain Aging are Altered in Schizophrenia.

Sabunciyan S.

Sci Rep. 2019 Apr 11;9(1):5896. doi: 10.1038/s41598-019-42308-5.

2.

Transcription of human endogenous retroviruses in human brain by RNA-seq analysis.

Li F, Sabunciyan S, Yolken RH, Lee D, Kim S, Karlsson H.

PLoS One. 2019 Jan 3;14(1):e0207353. doi: 10.1371/journal.pone.0207353. eCollection 2019.

3.

Toxoplasma gondii-Induced Long-Term Changes in the Upper Intestinal Microflora during the Chronic Stage of Infection.

Prandovszky E, Li Y, Sabunciyan S, Steinfeldt CB, Avalos LN, Gressitt KL, White JR, Severance EG, Pletnikov MV, Xiao J, Yolken RH.

Scientifica (Cairo). 2018 Nov 1;2018:2308619. doi: 10.1155/2018/2308619. eCollection 2018.

4.

Analysis of microbiota in first episode psychosis identifies preliminary associations with symptom severity and treatment response.

Schwarz E, Maukonen J, Hyytiäinen T, Kieseppä T, Orešič M, Sabunciyan S, Mantere O, Saarela M, Yolken R, Suvisaari J.

Schizophr Res. 2018 Feb;192:398-403. doi: 10.1016/j.schres.2017.04.017. Epub 2017 Apr 22.

PMID:
28442250
5.

Widespread splicing of repetitive element loci into coding regions of gene transcripts.

Darby MM, Leek JT, Langmead B, Yolken RH, Sabunciyan S.

Hum Mol Genet. 2016 Nov 15;25(22):4962-4982. doi: 10.1093/hmg/ddw321.

PMID:
28171598
6.

Toxoplasma gondii-A Gastrointestinal Pathogen Associated with Human Brain Diseases.

Severance EG, Xiao J, Jones-Brando L, Sabunciyan S, Li Y, Pletnikov M, Prandovszky E, Yolken R.

Int Rev Neurobiol. 2016;131:143-163. doi: 10.1016/bs.irn.2016.08.008. Epub 2016 Oct 4. Review.

7.

Consistently altered expression of gene sets in postmortem brains of individuals with major psychiatric disorders.

Darby MM, Yolken RH, Sabunciyan S.

Transl Psychiatry. 2016 Sep 13;6(9):e890. doi: 10.1038/tp.2016.173.

8.

Association of DNA Methylation Differences With Schizophrenia in an Epigenome-Wide Association Study.

Montano C, Taub MA, Jaffe A, Briem E, Feinberg JI, Trygvadottir R, Idrizi A, Runarsson A, Berndsen B, Gur RC, Moore TM, Perry RT, Fugman D, Sabunciyan S, Yolken RH, Hyde TM, Kleinman JE, Sobell JL, Pato CN, Pato MT, Go RC, Nimgaonkar V, Weinberger DR, Braff D, Gur RE, Fallin MD, Feinberg AP.

JAMA Psychiatry. 2016 May 1;73(5):506-14. doi: 10.1001/jamapsychiatry.2016.0144.

9.

CLASS2: accurate and efficient splice variant annotation from RNA-seq reads.

Song L, Sabunciyan S, Florea L.

Nucleic Acids Res. 2016 Jun 2;44(10):e98. doi: 10.1093/nar/gkw158. Epub 2016 Mar 14.

10.

Association of DNA Methylation with Acute Mania and Inflammatory Markers.

Sabunciyan S, Maher B, Bahn S, Dickerson F, Yolken RH.

PLoS One. 2015 Jul 6;10(7):e0132001. doi: 10.1371/journal.pone.0132001. eCollection 2015.

11.

Metagenomic Sequencing Indicates That the Oropharyngeal Phageome of Individuals With Schizophrenia Differs From That of Controls.

Yolken RH, Severance EG, Sabunciyan S, Gressitt KL, Chen O, Stallings C, Origoni A, Katsafanas E, Schweinfurth LA, Savage CL, Banis M, Khushalani S, Dickerson FB.

Schizophr Bull. 2015 Sep;41(5):1153-61. doi: 10.1093/schbul/sbu197. Epub 2015 Feb 9.

12.

Reply to Kjartansdóttir et al.: Chlorovirus ATCV-1 findings not explained by contamination.

Yolken RH, Jones-Brando L, Dunigan DD, Kannan G, Dickerson F, Severance E, Sabunciyan S, Talbot CC Jr, Prandovszky E, Gurnon JR, Agarkova IV, Leister F, Gressitt KL, Chen O, Deuber B, Ma F, Pletnikov MV, Van Etten JL.

Proc Natl Acad Sci U S A. 2015 Mar 3;112(9):E927. doi: 10.1073/pnas.1424665112. Epub 2015 Feb 5. No abstract available.

13.

Chlorovirus ATCV-1 is part of the human oropharyngeal virome and is associated with changes in cognitive functions in humans and mice.

Yolken RH, Jones-Brando L, Dunigan DD, Kannan G, Dickerson F, Severance E, Sabunciyan S, Talbot CC Jr, Prandovszky E, Gurnon JR, Agarkova IV, Leister F, Gressitt KL, Chen O, Deuber B, Ma F, Pletnikov MV, Van Etten JL.

Proc Natl Acad Sci U S A. 2014 Nov 11;111(45):16106-11. doi: 10.1073/pnas.1418895111. Epub 2014 Oct 27.

14.

Repetitive elements and epigenetic marks in behavior and psychiatric disease.

Darby MM, Sabunciyan S.

Adv Genet. 2014;86:185-252. doi: 10.1016/B978-0-12-800222-3.00009-7. Review.

PMID:
25172351
15.

Visualization and probability-based scoring of structural variants within repetitive sequences.

Halper-Stromberg E, Steranka J, Burns KH, Sabunciyan S, Irizarry RA.

Bioinformatics. 2014 Jun 1;30(11):1514-21. doi: 10.1093/bioinformatics/btu054. Epub 2014 Feb 4.

16.

Transcriptional derepression of the ERVWE1 locus following influenza A virus infection.

Li F, Nellåker C, Sabunciyan S, Yolken RH, Jones-Brando L, Johansson AS, Owe-Larsson B, Karlsson H.

J Virol. 2014 Apr;88(8):4328-37. doi: 10.1128/JVI.03628-13. Epub 2014 Jan 29.

17.

Differential expression analysis of RNA-seq data at single-base resolution.

Frazee AC, Sabunciyan S, Hansen KD, Irizarry RA, Leek JT.

Biostatistics. 2014 Jul;15(3):413-26. doi: 10.1093/biostatistics/kxt053. Epub 2014 Jan 6. Erratum in: Biostatistics. 2014 Jul;15(3):584-5.

18.

Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization.

Hansen KD, Sabunciyan S, Langmead B, Nagy N, Curley R, Klein G, Klein E, Salamon D, Feinberg AP.

Genome Res. 2014 Feb;24(2):177-84. doi: 10.1101/gr.157743.113. Epub 2013 Sep 25.

19.

Human induced pluripotent stem cell-derived models to investigate human cytomegalovirus infection in neural cells.

D'Aiuto L, Di Maio R, Heath B, Raimondi G, Milosevic J, Watson AM, Bamne M, Parks WT, Yang L, Lin B, Miki T, Mich-Basso JD, Arav-Boger R, Sibille E, Sabunciyan S, Yolken R, Nimgaonkar V.

PLoS One. 2012;7(11):e49700. doi: 10.1371/journal.pone.0049700. Epub 2012 Nov 27. Erratum in: PLoS One. 2014;9(1). doi:10.1371/annotation/ea66e8f1-9f80-422f-8836-308a4cdc8ae4.

20.

Antibodies to retroviruses in recent onset psychosis and multi-episode schizophrenia.

Dickerson F, Lillehoj E, Stallings C, Wiley M, Origoni A, Vaughan C, Khushalani S, Sabunciyan S, Yolken R.

Schizophr Res. 2012 Jul;138(2-3):198-205. doi: 10.1016/j.schres.2012.03.037. Epub 2012 Apr 27.

PMID:
22542615
21.

Genome-wide DNA methylation scan in major depressive disorder.

Sabunciyan S, Aryee MJ, Irizarry RA, Rongione M, Webster MJ, Kaufman WE, Murakami P, Lessard A, Yolken RH, Feinberg AP, Potash JB; GenRED Consortium.

PLoS One. 2012;7(4):e34451. doi: 10.1371/journal.pone.0034451. Epub 2012 Apr 12.

22.

Establishing the baseline level of repetitive element expression in the human cortex.

Tyekucheva S, Yolken RH, McCombie WR, Parla J, Kramer M, Wheelan SJ, Sabunciyan S.

BMC Genomics. 2011 Oct 10;12:495. doi: 10.1186/1471-2164-12-495.

23.

Increased methylation variation in epigenetic domains across cancer types.

Hansen KD, Timp W, Bravo HC, Sabunciyan S, Langmead B, McDonald OG, Wen B, Wu H, Liu Y, Diep D, Briem E, Zhang K, Irizarry RA, Feinberg AP.

Nat Genet. 2011 Jun 26;43(8):768-75. doi: 10.1038/ng.865.

24.

No difference in antibody titers against xenotropic MLV related virus in prostate cancer cases and cancer-free controls.

Sabunciyan S, Mandelberg N, Rabkin CS, Yolken R, Viscidi R.

Mol Cell Probes. 2011 Apr-Jun;25(2-3):134-6. doi: 10.1016/j.mcp.2011.01.005. Epub 2011 Jan 31.

25.

The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores.

Irizarry RA, Ladd-Acosta C, Wen B, Wu Z, Montano C, Onyango P, Cui H, Gabo K, Rongione M, Webster M, Ji H, Potash J, Sabunciyan S, Feinberg AP.

Nat Genet. 2009 Feb;41(2):178-186. doi: 10.1038/ng.298. Epub 2009 Jan 18.

26.

Putative psychosis genes in the prefrontal cortex: combined analysis of gene expression microarrays.

Choi KH, Elashoff M, Higgs BW, Song J, Kim S, Sabunciyan S, Diglisic S, Yolken RH, Knable MB, Torrey EF, Webster MJ.

BMC Psychiatry. 2008 Nov 7;8:87. doi: 10.1186/1471-244X-8-87.

27.

DNA methylation signatures within the human brain.

Ladd-Acosta C, Pevsner J, Sabunciyan S, Yolken RH, Webster MJ, Dinkins T, Callinan PA, Fan JB, Potash JB, Feinberg AP.

Am J Hum Genet. 2007 Dec;81(6):1304-15. Epub 2007 Nov 1.

28.

Polymorphisms in the homeobox gene OTX2 may be a risk factor for bipolar disorder.

Sabunciyan S, Yolken R, Ragan CM, Potash JB, Nimgaonkar VL, Dickerson F, Llenos IC, Weis S.

Am J Med Genet B Neuropsychiatr Genet. 2007 Dec 5;144B(8):1083-6.

PMID:
17541950
29.

Reduced expression of human endogenous retrovirus (HERV)-W GAG protein in the cingulate gyrus and hippocampus in schizophrenia, bipolar disorder, and depression.

Weis S, Llenos IC, Sabunciyan S, Dulay JR, Isler L, Yolken R, Perron H.

J Neural Transm (Vienna). 2007;114(5):645-55. Epub 2007 Jan 15.

PMID:
17219017
30.

Quantification of total mitochondrial DNA and mitochondrial common deletion in the frontal cortex of patients with schizophrenia and bipolar disorder.

Sabunciyan S, Kirches E, Krause G, Bogerts B, Mawrin C, Llenos IC, Weis S.

J Neural Transm (Vienna). 2007;114(5):665-74. Epub 2007 Jan 3.

PMID:
17195919
31.

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